mRNA_Ecto-sp13_S_contig13792.2977.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13792.2977.1
Unique NamemRNA_Ecto-sp13_S_contig13792.2977.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13792.2977.1 vs. uniprot
Match: D7FXS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS2_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 7.650e-45
Identity = 73/85 (85.88%), Postives = 78/85 (91.76%), Query Frame = 1
Query:    1 PGQCLEAFVVALNTSCDGNVWCTSTKELQLASWQFCIACRDVPTLHLAVYNSHVPARVWNDHAATEARTGAKRPSTTRVPVFRPR 255
            PG+CLEAF VALNTSCDGNVW TSTKELQLAS QFC+ CR VP+LHLAV N+HVPAR+WNDHAATEARTGAKRPSTT VPVFRPR
Sbjct:    4 PGRCLEAFAVALNTSCDGNVWYTSTKELQLASLQFCVKCRKVPSLHLAVNNAHVPARLWNDHAATEARTGAKRPSTTPVPVFRPR 88          
BLAST of mRNA_Ecto-sp13_S_contig13792.2977.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.690e-14
Identity = 69/201 (34.33%), Postives = 92/201 (45.77%), Query Frame = 1
Query:   10 CLEAFVVALNTSCDGNVWCTSTKELQLASWQFCIACRDVPTLHLAVYNSHVPARVWNDHAATEARTGAKRPSTTRVPVFRPRG---DLGT-----TSLVAIRHMSCVC*SEAFSCPPRHRGGRCGMAMKAQEAVLRREIRYAGGPRCVAGFT*GNRVRGNVQRPINGISRPIALKTLTLNLNFNQPIDNAVWPPSLQVLIF 588
            CLEA +VALN +CDG  W TSTKELQLAS  FCIACR+  T+HL V +  +P R+     A       KR   TRVP  R R    ++ T     T + A+  M  +   +AF        G    A+   E +   E  +                     + I  +  P  L+ +T   +FNQPI+   +P SLQ LIF
Sbjct:   51 CLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNV-DEQIPRRLLASADAPPPHP--KRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAF--------GDSLEAVPWPEHLRTMEFHHDSP----------------FDQTIELVQWPPFLQNVTFGGDFNQPIERVKFPASLQQLIF 224          
BLAST of mRNA_Ecto-sp13_S_contig13792.2977.1 vs. uniprot
Match: D7G241_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G241_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 4.350e-14
Identity = 48/90 (53.33%), Postives = 57/90 (63.33%), Query Frame = 1
Query:    7 QCLEAFVVALNTSCDGNVWCTSTKELQLASWQFCIACRDVPTLHLAVYNSHVPARVWNDHAATEAR---TGAKRP----STTRVPVFRPR 255
            QCLEAFVVAL+ +CDG  W  ST++LQLAS   C ACR VPTL L+V  S  P  +W + AA   R   TG K+P    + TRVP F PR
Sbjct:   11 QCLEAFVVALDLTCDGEKWYASTQQLQLASLDLCKACRGVPTLALSVERS-TPEYLWAE-AARGPRGRLTGEKKPPAARTRTRVPPFGPR 98          
BLAST of mRNA_Ecto-sp13_S_contig13792.2977.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 3.840e-12
Identity = 63/188 (33.51%), Postives = 87/188 (46.28%), Query Frame = 1
Query:    7 QCLEAFVVALNTSCDGNVWCTSTKELQLASWQFCIACRDVPTLHLAVYNSHVPARVWNDHAATEARTGAKRPSTTRVPVFR--------PRGDLGTTSLVAIRHMSCVC*SEAFSCPPRHRGGRCGMAMKAQEAVLRREIRYAGGPRCVAGFT*GNRVRGNVQRPINGISRPIALKTLTLNLNFNQPI 546
             CL+   VALN +CDG  W TSTKELQLAS + C+ACR   TLHL V ++H P R+    AA       KR   TRVP  R        P      TS+ A   +  +   +AF                + +A++         PR +   T   R    + R ++G+S P +L+ + L  +FNQPI
Sbjct:  135 SCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTV-DAHTPRRLLA--AADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFH--------------GSLDAIV--------WPRRLK--TIEFRQSSPLNRLLDGVSWPASLRKVCLGHDFNQPI 295          
BLAST of mRNA_Ecto-sp13_S_contig13792.2977.1 vs. uniprot
Match: D8LCS9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS9_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.130e-11
Identity = 41/95 (43.16%), Postives = 53/95 (55.79%), Query Frame = 1
Query:    7 QCLEAFVVALNTSCDGNVWCTSTKELQLASWQFCIACRDVPTLHLAVYNSHVPARVWNDHAATEARTGAKRPSTTRVPVFRPRGDLGTTSLVAIR 291
            +CL+A +VAL  + DG  W T T +LQLAS  FC ACR VPT+HL V +  VPAR+         + G      +RVP FRPR       + A+R
Sbjct:   84 RCLDALIVALTNAGDGQGWYTPTTQLQLASLDFCTACRAVPTVHLTV-DGDVPARL---------KAGIDNGGASRVPAFRPRCVTWNKPIAALR 168          
BLAST of mRNA_Ecto-sp13_S_contig13792.2977.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.920e-11
Identity = 40/82 (48.78%), Postives = 49/82 (59.76%), Query Frame = 1
Query:   10 CLEAFVVALNTSCDGNVWCTSTKELQLASWQFCIACRDVPTLHLAVYNSHVPARVWNDHAATEARTGAKRPSTTRVPVFRPR 255
            CL + +VALN +CDG  W TSTKELQ AS +FCIACR+ P +HL V +  +P  +    AA       KR   TRVP  R R
Sbjct:   14 CLSSLIVALNETCDGTSWYTSTKELQRASLEFCIACRNYPIMHLKV-DPQIPRNLLA--AADAPPPHPKRLCWTRVPRLRAR 92          
BLAST of mRNA_Ecto-sp13_S_contig13792.2977.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 3.600e-11
Identity = 42/88 (47.73%), Postives = 52/88 (59.09%), Query Frame = 1
Query:    7 QCLEAFVVALNTSCDGNVWCTSTKELQLASWQFCIACRDVPTLHLAVYNSHVPARVWNDHAATEARTGAKRPST-----TRVPVFRPR 255
             CL A V+ALN +C+G  W TSTKELQLAS +FC+ACR+  TLHL V ++ +P R+        AR  A  P       TRVP  R R
Sbjct:  112 SCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKV-DAQIPRRLL-------ARADAPPPHPELLCRTRVPRLRAR 191          
BLAST of mRNA_Ecto-sp13_S_contig13792.2977.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.970e-10
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    7 QCLEAFVVALNTSCDGNV--WCTSTKELQLASWQFCIACRDVPTLHLAVYNSHVPARVWN 180
            +CL+AFVVALN +CDG    W  ST ELQL S +FC ACR VPTLH+ V +   P  +W+
Sbjct:   40 KCLDAFVVALNQTCDGQEKRWYASTLELQLVSLEFCGACRHVPTLHVRV-DRRTPRSLWS 98          
BLAST of mRNA_Ecto-sp13_S_contig13792.2977.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.410e-9
Identity = 40/89 (44.94%), Postives = 52/89 (58.43%), Query Frame = 1
Query:    7 QCLEAFVVALNTSCDGNV--WCTSTKELQLASWQFCIACRDVPTLHLAVYNSHVPARVWN---DHAATEARTGAKRPSTTRVPVFRPRG 258
            +CL AF+VALN +C+G    W  ST ELQL S +FC ACR VPTLH+ V +   P  +W+    HA T+ R+     S  RVP  +  G
Sbjct:   16 ECLRAFIVALNQTCNGQEKRWYASTLELQLVSLEFCGACRRVPTLHVRV-DRQTPRSLWSPCKSHATTKKRSREACVSN-RVPAVQASG 102          
BLAST of mRNA_Ecto-sp13_S_contig13792.2977.1 vs. uniprot
Match: D7G3G0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G0_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.480e-9
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 1
Query:    7 QCLEAFVVALNTSCDG--NVWCTSTKELQLASWQFCIACRDVPTLHLAV 147
            +CL+AF+VALN +CDG  N W  ST ELQL S +FC ACR  PTLH+ V
Sbjct:    8 KCLDAFIVALNQTCDGRENRWYASTLELQLVSLKFCGACRRFPTLHVRV 56          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13792.2977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7FXS2_ECTSI7.650e-4585.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRF9_9PHAE1.690e-1434.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G241_ECTSI4.350e-1453.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPY7_9PHAE3.840e-1233.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCS9_ECTSI1.130e-1143.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FH81_ECTSI1.920e-1148.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2S9_ECTSI3.600e-1147.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0Z9_ECTSI1.970e-1055.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLV1_9PHAE1.410e-944.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3G0_ECTSI1.480e-961.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13792contigEcto-sp13_S_contig13792:3672..4282 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size611
Hectar predicted targeting categorymitochondrion
Exons1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462736.398734-UTR-Ecto-sp13_S_contig13792:3671..39121681462736.398734-UTR-Ecto-sp13_S_contig13792:3671..3912Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13792 3672..3912 -
1681462736.4306028-UTR-Ecto-sp13_S_contig13792:4227..42821681462736.4306028-UTR-Ecto-sp13_S_contig13792:4227..4282Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13792 4228..4282 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462736.4165132-CDS-Ecto-sp13_S_contig13792:3912..42271681462736.4165132-CDS-Ecto-sp13_S_contig13792:3912..4227Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13792 3913..4227 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13792.2977.1prot_Ecto-sp13_S_contig13792.2977.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13792 3913..4227 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13792.2977.1

>prot_Ecto-sp13_S_contig13792.2977.1 ID=prot_Ecto-sp13_S_contig13792.2977.1|Name=mRNA_Ecto-sp13_S_contig13792.2977.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
MSGAHRQRSFSWRLGSFVSRAGTCLRCILLSTTRTSLPACGTIMLLRRLA
QEQNGPALRGCRCFGREVTWGRPAWLLLDTCLVFAKVKRFLVRRDTVVDG
VVWR*
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mRNA from alignment at Ecto-sp13_S_contig13792:3672..4282-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13792.2977.1 ID=mRNA_Ecto-sp13_S_contig13792.2977.1|Name=mRNA_Ecto-sp13_S_contig13792.2977.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=611bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13792:3672..4282- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGGGCAATGTTTGGAAGCCTTCGTCGTTGCTCTCAACACGAGCTGTGA CGGGAATGTCTGGTGCACATCGACAAAGGAGCTTCAGCTGGCGTCTTGGC AGTTTTGTATCGCGTGCAGGGACGTGCCTACGTTGCATCTTGCTGTCTAC AACTCGCACGTCCCTGCCCGCGTGTGGAACGATCATGCTGCTACGGAGGC TCGCACAGGAGCAAAACGGCCCAGCACTACGCGGGTGCCGGTGTTTCGGC CGCGAGGTGACTTGGGGACGACCAGCTTGGTTGCTATTAGACACATGTCT TGTGTTTGCTAAAGTGAAGCGTTTTCTTGTCCGCCGAGACACCGTGGTGG ACGGTGTGGTATGGCGATGAAGGCTCAAGAAGCTGTCCTTCGGCGAGAGA TTCGATACGCCGGTGGACCACGCTGCGTGGCCGGCTTCACTTGAGGAAAT CGCGTTCGGGGAAACGTTCAGCGGCCGATCAATGGTATATCGCGGCCAAT AGCTCTGAAAACGCTAACGTTAAACCTCAACTTCAACCAACCAATCGACA ATGCCGTCTGGCCACCTTCCCTACAGGTTTTGATCTTTGGAGACATGTTC AACCAGCCTAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13792:3672..4282-

>mRNA_Ecto-sp13_S_contig13792.2977.1 ID=mRNA_Ecto-sp13_S_contig13792.2977.1|Name=mRNA_Ecto-sp13_S_contig13792.2977.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13792:3672..4282- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTGGTGCACATCGACAAAGGAGCTTCAGCTGGCGTCTTGGCAGTTT
TGTATCGCGTGCAGGGACGTGCCTACGTTGCATCTTGCTGTCTACAACTC
GCACGTCCCTGCCCGCGTGTGGAACGATCATGCTGCTACGGAGGCTCGCA
CAGGAGCAAAACGGCCCAGCACTACGCGGGTGCCGGTGTTTCGGCCGCGA
GGTGACTTGGGGACGACCAGCTTGGTTGCTATTAGACACATGTCTTGTGT
TTGCTAAAGTGAAGCGTTTTCTTGTCCGCCGAGACACCGTGGTGGACGGT
GTGGTATGGCGATGA
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