mRNA_Ecto-sp13_S_contig13792.2977.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13792.2977.1 vs. uniprot
Match: D7FXS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS2_ECTSI) HSP 1 Score: 157 bits (396), Expect = 7.650e-45 Identity = 73/85 (85.88%), Postives = 78/85 (91.76%), Query Frame = 1
Query: 1 PGQCLEAFVVALNTSCDGNVWCTSTKELQLASWQFCIACRDVPTLHLAVYNSHVPARVWNDHAATEARTGAKRPSTTRVPVFRPR 255
PG+CLEAF VALNTSCDGNVW TSTKELQLAS QFC+ CR VP+LHLAV N+HVPAR+WNDHAATEARTGAKRPSTT VPVFRPR
Sbjct: 4 PGRCLEAFAVALNTSCDGNVWYTSTKELQLASLQFCVKCRKVPSLHLAVNNAHVPARLWNDHAATEARTGAKRPSTTPVPVFRPR 88
BLAST of mRNA_Ecto-sp13_S_contig13792.2977.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 1.690e-14 Identity = 69/201 (34.33%), Postives = 92/201 (45.77%), Query Frame = 1
Query: 10 CLEAFVVALNTSCDGNVWCTSTKELQLASWQFCIACRDVPTLHLAVYNSHVPARVWNDHAATEARTGAKRPSTTRVPVFRPRG---DLGT-----TSLVAIRHMSCVC*SEAFSCPPRHRGGRCGMAMKAQEAVLRREIRYAGGPRCVAGFT*GNRVRGNVQRPINGISRPIALKTLTLNLNFNQPIDNAVWPPSLQVLIF 588
CLEA +VALN +CDG W TSTKELQLAS FCIACR+ T+HL V + +P R+ A KR TRVP R R ++ T T + A+ M + +AF G A+ E + E + + I + P L+ +T +FNQPI+ +P SLQ LIF
Sbjct: 51 CLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNV-DEQIPRRLLASADAPPPHP--KRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAF--------GDSLEAVPWPEHLRTMEFHHDSP----------------FDQTIELVQWPPFLQNVTFGGDFNQPIERVKFPASLQQLIF 224
BLAST of mRNA_Ecto-sp13_S_contig13792.2977.1 vs. uniprot
Match: D7G241_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G241_ECTSI) HSP 1 Score: 78.2 bits (191), Expect = 4.350e-14 Identity = 48/90 (53.33%), Postives = 57/90 (63.33%), Query Frame = 1
Query: 7 QCLEAFVVALNTSCDGNVWCTSTKELQLASWQFCIACRDVPTLHLAVYNSHVPARVWNDHAATEAR---TGAKRP----STTRVPVFRPR 255
QCLEAFVVAL+ +CDG W ST++LQLAS C ACR VPTL L+V S P +W + AA R TG K+P + TRVP F PR
Sbjct: 11 QCLEAFVVALDLTCDGEKWYASTQQLQLASLDLCKACRGVPTLALSVERS-TPEYLWAE-AARGPRGRLTGEKKPPAARTRTRVPPFGPR 98
BLAST of mRNA_Ecto-sp13_S_contig13792.2977.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 3.840e-12 Identity = 63/188 (33.51%), Postives = 87/188 (46.28%), Query Frame = 1
Query: 7 QCLEAFVVALNTSCDGNVWCTSTKELQLASWQFCIACRDVPTLHLAVYNSHVPARVWNDHAATEARTGAKRPSTTRVPVFR--------PRGDLGTTSLVAIRHMSCVC*SEAFSCPPRHRGGRCGMAMKAQEAVLRREIRYAGGPRCVAGFT*GNRVRGNVQRPINGISRPIALKTLTLNLNFNQPI 546
CL+ VALN +CDG W TSTKELQLAS + C+ACR TLHL V ++H P R+ AA KR TRVP R P TS+ A + + +AF + +A++ PR + T R + R ++G+S P +L+ + L +FNQPI
Sbjct: 135 SCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTV-DAHTPRRLLA--AADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFH--------------GSLDAIV--------WPRRLK--TIEFRQSSPLNRLLDGVSWPASLRKVCLGHDFNQPI 295
BLAST of mRNA_Ecto-sp13_S_contig13792.2977.1 vs. uniprot
Match: D8LCS9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS9_ECTSI) HSP 1 Score: 72.4 bits (176), Expect = 1.130e-11 Identity = 41/95 (43.16%), Postives = 53/95 (55.79%), Query Frame = 1
Query: 7 QCLEAFVVALNTSCDGNVWCTSTKELQLASWQFCIACRDVPTLHLAVYNSHVPARVWNDHAATEARTGAKRPSTTRVPVFRPRGDLGTTSLVAIR 291
+CL+A +VAL + DG W T T +LQLAS FC ACR VPT+HL V + VPAR+ + G +RVP FRPR + A+R
Sbjct: 84 RCLDALIVALTNAGDGQGWYTPTTQLQLASLDFCTACRAVPTVHLTV-DGDVPARL---------KAGIDNGGASRVPAFRPRCVTWNKPIAALR 168
BLAST of mRNA_Ecto-sp13_S_contig13792.2977.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI) HSP 1 Score: 70.5 bits (171), Expect = 1.920e-11 Identity = 40/82 (48.78%), Postives = 49/82 (59.76%), Query Frame = 1
Query: 10 CLEAFVVALNTSCDGNVWCTSTKELQLASWQFCIACRDVPTLHLAVYNSHVPARVWNDHAATEARTGAKRPSTTRVPVFRPR 255
CL + +VALN +CDG W TSTKELQ AS +FCIACR+ P +HL V + +P + AA KR TRVP R R
Sbjct: 14 CLSSLIVALNETCDGTSWYTSTKELQRASLEFCIACRNYPIMHLKV-DPQIPRNLLA--AADAPPPHPKRLCWTRVPRLRAR 92
BLAST of mRNA_Ecto-sp13_S_contig13792.2977.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI) HSP 1 Score: 71.6 bits (174), Expect = 3.600e-11 Identity = 42/88 (47.73%), Postives = 52/88 (59.09%), Query Frame = 1
Query: 7 QCLEAFVVALNTSCDGNVWCTSTKELQLASWQFCIACRDVPTLHLAVYNSHVPARVWNDHAATEARTGAKRPST-----TRVPVFRPR 255
CL A V+ALN +C+G W TSTKELQLAS +FC+ACR+ TLHL V ++ +P R+ AR A P TRVP R R
Sbjct: 112 SCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKV-DAQIPRRLL-------ARADAPPPHPELLCRTRVPRLRAR 191
BLAST of mRNA_Ecto-sp13_S_contig13792.2977.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI) HSP 1 Score: 65.9 bits (159), Expect = 1.970e-10 Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query: 7 QCLEAFVVALNTSCDGNV--WCTSTKELQLASWQFCIACRDVPTLHLAVYNSHVPARVWN 180
+CL+AFVVALN +CDG W ST ELQL S +FC ACR VPTLH+ V + P +W+
Sbjct: 40 KCLDAFVVALNQTCDGQEKRWYASTLELQLVSLEFCGACRHVPTLHVRV-DRRTPRSLWS 98
BLAST of mRNA_Ecto-sp13_S_contig13792.2977.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE) HSP 1 Score: 67.0 bits (162), Expect = 1.410e-9 Identity = 40/89 (44.94%), Postives = 52/89 (58.43%), Query Frame = 1
Query: 7 QCLEAFVVALNTSCDGNV--WCTSTKELQLASWQFCIACRDVPTLHLAVYNSHVPARVWN---DHAATEARTGAKRPSTTRVPVFRPRG 258
+CL AF+VALN +C+G W ST ELQL S +FC ACR VPTLH+ V + P +W+ HA T+ R+ S RVP + G
Sbjct: 16 ECLRAFIVALNQTCNGQEKRWYASTLELQLVSLEFCGACRRVPTLHVRV-DRQTPRSLWSPCKSHATTKKRSREACVSN-RVPAVQASG 102
BLAST of mRNA_Ecto-sp13_S_contig13792.2977.1 vs. uniprot
Match: D7G3G0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G0_ECTSI) HSP 1 Score: 62.0 bits (149), Expect = 1.480e-9 Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 1
Query: 7 QCLEAFVVALNTSCDG--NVWCTSTKELQLASWQFCIACRDVPTLHLAV 147
+CL+AF+VALN +CDG N W ST ELQL S +FC ACR PTLH+ V
Sbjct: 8 KCLDAFIVALNQTCDGRENRWYASTLELQLVSLKFCGACRRFPTLHVRV 56 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13792.2977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13792.2977.1 >prot_Ecto-sp13_S_contig13792.2977.1 ID=prot_Ecto-sp13_S_contig13792.2977.1|Name=mRNA_Ecto-sp13_S_contig13792.2977.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp MSGAHRQRSFSWRLGSFVSRAGTCLRCILLSTTRTSLPACGTIMLLRRLAback to top mRNA from alignment at Ecto-sp13_S_contig13792:3672..4282- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13792.2977.1 ID=mRNA_Ecto-sp13_S_contig13792.2977.1|Name=mRNA_Ecto-sp13_S_contig13792.2977.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=611bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13792:3672..4282- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13792:3672..4282- >mRNA_Ecto-sp13_S_contig13792.2977.1 ID=mRNA_Ecto-sp13_S_contig13792.2977.1|Name=mRNA_Ecto-sp13_S_contig13792.2977.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13792:3672..4282- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |