mRNA_Ecto-sp13_S_contig13775.2963.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13775.2963.1
Unique NamemRNA_Ecto-sp13_S_contig13775.2963.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13775.2963.1 vs. uniprot
Match: D7FJQ9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJQ9_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 5.070e-57
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 1
Query:    1 MELSGAGLSAKRVSDEMVELTWKTGNEEGNIGFIVSRRAAKTDEWQEIASYKDFPPLNSKGPGGGIYTYADDNVELGTWVYRISDISK 264
            MELSGAGLSAKRVSDEMVELTWKTGNEEGNIGFIVSRRAAKTDEWQEIASYKDFPPLNSKGPGGGIYTYADDNV+LGTWVYRISDISK
Sbjct:  132 MELSGAGLSAKRVSDEMVELTWKTGNEEGNIGFIVSRRAAKTDEWQEIASYKDFPPLNSKGPGGGIYTYADDNVDLGTWVYRISDISK 219          
BLAST of mRNA_Ecto-sp13_S_contig13775.2963.1 vs. uniprot
Match: A0A835Z5V8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5V8_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.050e-33
Identity = 55/88 (62.50%), Postives = 69/88 (78.41%), Query Frame = 1
Query:    1 MELSGAGLSAKRVSDEMVELTWKTGNEEGNIGFIVSRRAAKTDEWQEIASYKDFPPLNSKGPGGGIYTYADDNVELGTWVYRISDISK 264
            MELSG GL+ K+V+   VEL WKTG+E GN+GF+VS+R  KTDEW +IASYKD+ PLNSKG  GG YT+ D + E GTWVYR+SD++ 
Sbjct:  128 MELSGLGLNIKQVNGNDVELEWKTGDEAGNLGFVVSKRRGKTDEWTQIASYKDWAPLNSKGEQGGRYTFVDPDCEQGTWVYRVSDVNS 215          
BLAST of mRNA_Ecto-sp13_S_contig13775.2963.1 vs. uniprot
Match: A0A6V1RAY1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RAY1_HETAK)

HSP 1 Score: 115 bits (289), Expect = 5.150e-30
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 1
Query:    1 MELSGAGLSAKRVSDEMVELTWKTGNEEGNIGFIVSRRAAKTDEWQEIASYKDFPPLNSKGPGGGIYTYADDNVELGTWVYRISDIS 261
            MELSG GL  K V DE  E++W TG+E GN GFI+++R   +D+WQ +ASY D+ PLNSKGP GG YTY D + E GTW+YR+SD++
Sbjct:  124 MELSGVGLKTKMVGDEC-EISWGTGDETGNKGFIITKRRGGSDDWQVVASYTDWAPLNSKGPAGGQYTYMDSDTEQGTWIYRVSDVN 209          
BLAST of mRNA_Ecto-sp13_S_contig13775.2963.1 vs. uniprot
Match: A0A6U5EDM8_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A6U5EDM8_9EUKA)

HSP 1 Score: 99.0 bits (245), Expect = 3.070e-23
Identity = 47/85 (55.29%), Postives = 58/85 (68.24%), Query Frame = 1
Query:    4 ELSGAGLSAKRVSDEMVELTWKTGNEEGNIGFIVSRRAAKTDEWQEIASYKDFPPLNSKGPGGGIYTYADDNV-ELGTWVYRISD 255
            EL G GL +K +S+E VEL W TGNE GN GF+V RRA  ++ ++ IASY+    L SKGP GG+Y Y DD V   GTWVYR+ D
Sbjct:  143 ELGGGGLRSKILSEEEVELRWSTGNEAGNEGFLVQRRAGGSNNFEVIASYEKVGALKSKGPQGGVYAYLDDTVPSTGTWVYRVLD 227          
BLAST of mRNA_Ecto-sp13_S_contig13775.2963.1 vs. uniprot
Match: A0A7S3ZJZ7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZJZ7_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.020e-22
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    4 ELSGAGLSAKRVSDEMVELTWKTGNEEGNIGFIVSRRAAKTDEWQEIASYKDFPPLNSKGPGGGIYTYADDNVELGTWVYRI 249
            EL+G GL AK +S++ VELTW T +EE N GF+V R+A    +W E+ASY+ + PL SKG  GG Y+Y D  V  G W+YRI
Sbjct:  146 ELTGLGLKAKVLSEDEVELTWSTDDEEANRGFLVERKAVGYSDWDEVASYQSWSPLKSKGTLGGAYSYIDATVSEGEWLYRI 227          
BLAST of mRNA_Ecto-sp13_S_contig13775.2963.1 vs. uniprot
Match: A0A7S0T6E7_9RHOD (Hypothetical protein n=2 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T6E7_9RHOD)

HSP 1 Score: 95.5 bits (236), Expect = 6.260e-22
Identity = 41/88 (46.59%), Postives = 62/88 (70.45%), Query Frame = 1
Query:    4 ELSGAGLSAKRVSDEMVELTWKTGNEEGNIGFIVSRRAAKTDEWQEIASYKDFPP-LNSKGPGGGIYTYADDNVELGTWVYRISDISK 264
            EL+G+GL  K + DE+ ELTW TG+E GN+GF++ +R  K+D+++ +  YK  P    SKGP GG+Y+Y     E GTW+YR+SD+++
Sbjct:  148 ELAGSGLKWKLLGDEL-ELTWATGDETGNVGFMLQKRRGKSDKFELVDDYKSLPATFQSKGPAGGVYSYLGPKPEPGTWIYRVSDVAE 234          
BLAST of mRNA_Ecto-sp13_S_contig13775.2963.1 vs. uniprot
Match: A0A7R9W2U1_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W2U1_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 9.090e-22
Identity = 46/87 (52.87%), Postives = 59/87 (67.82%), Query Frame = 1
Query:    4 ELSGAGLSAKRVSDEMVELTWKTGNEEGNIGFIVSRRAAKTDEWQEIASYKDFPPLNSKGPGGGIYTYADDNVELGTWVYRISDISK 264
            ELSG GL++K +  E VEL W T  E    GFIV RR AKT+E++ +ASY+D+ PL SKG  GG+Y Y D+ V  G WVYRIS++  
Sbjct:  198 ELSGTGLNSKIIDGE-VELEWATRTERDTKGFIVKRRPAKTNEFEPLASYEDWGPLQSKGAEGGVYRYLDNTVTPGGWVYRISEVDN 283          
BLAST of mRNA_Ecto-sp13_S_contig13775.2963.1 vs. uniprot
Match: A0A0M0JEB6_9EUKA (Peptidase s8 s53 subtilisin kexin sedolisin n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JEB6_9EUKA)

HSP 1 Score: 95.1 bits (235), Expect = 1.030e-21
Identity = 45/82 (54.88%), Postives = 54/82 (65.85%), Query Frame = 1
Query:   10 SGAGLSAKRVSDEMVELTWKTGNEEGNIGFIVSRRAAKTDEWQEIASYKDFPPLNSKGPGGGIYTYADDNVELGTWVYRISD 255
            +G GL +K +S+E VEL W T +E GN GFIV RR     E+ +IASYK F PL +KG  GG Y + DD V  GTWVYRI D
Sbjct:  151 AGGGLKSKVLSEEEVELRWSTQDEVGNAGFIVQRRKGGQPEFADIASYKSFSPLKTKGVAGGEYVFLDDAVSPGTWVYRILD 232          
BLAST of mRNA_Ecto-sp13_S_contig13775.2963.1 vs. uniprot
Match: A0A7S2ZH05_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZH05_9RHOD)

HSP 1 Score: 94.7 bits (234), Expect = 1.170e-21
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    4 ELSGAGLSAKRVSDEMVELTWKTGNEEGNIGFIVSRRAAKTDEWQEIASYKDFPP-LNSKGPGGGIYTYADDNVELGTWVYRISDISK 264
            EL+G GL  K + DE++ LTW TG+E  N GF++ +R  KTDEW +IA +   P  L SKG  GG Y++ D + E GTW+YR+SDI K
Sbjct:  145 ELAGVGLKYKSLGDELL-LTWSTGSERSNQGFVIRKRKGKTDEWIKIADFDSHPAELTSKGAQGGDYSWLDKSPEPGTWIYRVSDIDK 231          
BLAST of mRNA_Ecto-sp13_S_contig13775.2963.1 vs. uniprot
Match: B8BXV5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXV5_THAPS)

HSP 1 Score: 93.6 bits (231), Expect = 1.740e-21
Identity = 48/84 (57.14%), Postives = 56/84 (66.67%), Query Frame = 1
Query:    4 ELSGAGLSAKRVSDEMVELTWKTGNEEGNIGFIVSRRAAKTDEWQEIASYKDFPPLNSKGPGGGIYTYADDNVELGTWVYRISD 255
            ELSG GLS K +  E VEL W T +E    GFIV RRAAKT+++  IASYKD+ PL SKG  GGIY Y D     G WVYR+S+
Sbjct:  111 ELSGTGLSYKIIDGE-VELEWATKSEMDTKGFIVKRRAAKTNDYDVIASYKDWGPLASKGKEGGIYRYLDSTATPGGWVYRVSE 193          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13775.2963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D7FJQ9_ECTSI5.070e-5798.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z5V8_9STRA1.050e-3362.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V1RAY1_HETAK5.150e-3057.47Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U5EDM8_9EUKA3.070e-2355.29Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S3ZJZ7_9STRA3.020e-2252.44Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S0T6E7_9RHOD6.260e-2246.59Hypothetical protein n=2 Tax=Erythrolobus madagasc... [more]
A0A7R9W2U1_9STRA9.090e-2252.87Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A0M0JEB6_9EUKA1.030e-2154.88Peptidase s8 s53 subtilisin kexin sedolisin n=1 Ta... [more]
A0A7S2ZH05_9RHOD1.170e-2150.00Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
B8BXV5_THAPS1.740e-2157.14Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13775contigEcto-sp13_S_contig13775:3244..4183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score184.9
Seed ortholog evalue1.7e-44
Seed eggNOG ortholog2880.D7FJQ9
Model size267
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2CYRZ@1,2S61B@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_010550.1
Cds size267
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462735.2956178-CDS-Ecto-sp13_S_contig13775:3243..34251681462735.2956178-CDS-Ecto-sp13_S_contig13775:3243..3425Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13775 3244..3425 +
1681462735.3052735-CDS-Ecto-sp13_S_contig13775:4098..41831681462735.3052735-CDS-Ecto-sp13_S_contig13775:4098..4183Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13775 4099..4183 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13775.2963.1prot_Ecto-sp13_S_contig13775.2963.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13775 3244..4183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13775.2963.1

>prot_Ecto-sp13_S_contig13775.2963.1 ID=prot_Ecto-sp13_S_contig13775.2963.1|Name=mRNA_Ecto-sp13_S_contig13775.2963.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
MELSGAGLSAKRVSDEMVELTWKTGNEEGNIGFIVSRRAAKTDEWQEIAS
YKDFPPLNSKGPGGGIYTYADDNVELGTWVYRISDISK*
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mRNA from alignment at Ecto-sp13_S_contig13775:3244..4183+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13775.2963.1 ID=mRNA_Ecto-sp13_S_contig13775.2963.1|Name=mRNA_Ecto-sp13_S_contig13775.2963.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=940bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13775:3244..4183+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCTCTCAGGCGCAGGCCTGTCCGCCAAGAGGGTTTCGGATGAGAT GGTGGAGCTAACCTGGAAGACAGGAAACGAGGAGGGAAACATCGGTTTCA TCGTCAGCAGGCGGGCCGCTAAGACGGACGAGTGGCAGGAGATCGCATCG TACAAAGACTTCCCCCCTCTCAACTCCAAGGGGTGAGTGAACCAGTGGAC AAACGGCAAGTAGGGGTCCGGAAATCTGTTGGCGATTTGCCGGTGAAGGT GGTGGTGCGTTTAGAGCCCCGGAATCAACATGGTGCCAATGATAAAAATA CAGAATACAAAATCGAGCTGTGATTGGTCGAAGACCAAAAATAATACCGT TCGGGGTTTCCGGCAGAGTTCAAGTTTGAATTCCTGAAAATGAAACTTAA AAGTCTTCGCAATAAAAAAAGCATCAAAAATGAAAATTATTTTTTTTCCT CGGCCAACAGGGTCGATTTTAATTGATTTTGGCGCTTCGTTAGTTCAGGG CCTTAGAGCCGTTGTTGGGCTTCGTCGAAGGGGTTGTCGTTCGTGAAGGT GTTCCCGTGCGTCATCAGGGTTTCGTCAATGGGTGATGTCGAGATGTTTG ACGTCAAGGCAGGCAAGTAGTTCCGTACTGCCGTCCTCGGGAAAACGGGA GTCTTTGCGACCGCAAGAGCCGAAGGCAGGGAGGGAGGTCTCATATGGCG GTATTCACCCCTGTGCTTCGCCTTGCTTACTGGTGGCGTCGGGGTCCTGA CGTGCGTTTCGACCCTTTTTTTCTAGAAAGTAAGCATAACTACACAGAAA GACTACCCGTTCGAGACATAACCTCTTTTTTTTGTTTGTTTTGCCGGTGA AACAGGCCGGGGGGCGGCATCTACACCTATGCGGACGACAACGTTGAGTT GGGAACATGGGTGTACAGGATATCCGACATCAGCAAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13775:3244..4183+

>mRNA_Ecto-sp13_S_contig13775.2963.1 ID=mRNA_Ecto-sp13_S_contig13775.2963.1|Name=mRNA_Ecto-sp13_S_contig13775.2963.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13775:3244..4183+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCTCTCAGGCGCAGGCCTGTCCGCCAAGAGGGTTTCGGATGAGAT
GGTGGAGCTAACCTGGAAGACAGGAAACGAGGAGGGAAACATCGGTTTCA
TCGTCAGCAGGCGGGCCGCTAAGACGGACGAGTGGCAGGAGATCGCATCG
TACAAAGACTTCCCCCCTCTCAACTCCAAGGGGCCGGGGGGCGGCATCTA
CACCTATGCGGACGACAACGTTGAGTTGGGAACATGGGTGTACAGGATAT
CCGACATCAGCAAGTGA
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