mRNA_Ecto-sp13_S_contig1377.2960.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1377.2960.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI) HSP 1 Score: 584 bits (1505), Expect = 1.550e-209 Identity = 262/274 (95.62%), Postives = 270/274 (98.54%), Query Frame = 1
Query: 1 IMMKTSSNRWLGLLGAAVIMWSSASSVVATTSDQFDACEAAQEIGNGRCDLGNNVEECGFDGGDCCECTCEDGEYTCGQYFGYACIDPGAACVDDDAVTVDMMENCYDPSRIGNGVCDSLLNNEECAYDGGDCCECTCDPSRYPWYDSGEGCQTGMYGGFACIDPDAPCVDDDIVTAEMMDLCSTGQIGNGYCDDSNNSPECAYDGGDCCECTCESHDDGYEYYCEPGSFACIDPEAECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEECG 822
+MMKTSSNRWLGLLGAAVIMWSSASSVVATTSDQFDAC+AAQ+IGNGRC++GNN+EECGFDGGDCCECTCEDGEYTCGQY+GYACIDP A CVDDDAVTVDMMENCYDPSRIGNG CDSLLNNE+CAYDGGDCCECTCDPSRYPWYDSG GCQTGMYGGFACIDPDAPCVDDDIVTAEMMDLCSTGQIGNGYCDDSNNSPECAYDGGDCCECTCESHDDGYEYYCEPGSFACIDPEAECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEECG
Sbjct: 55 MMMKTSSNRWLGLLGAAVIMWSSASSVVATTSDQFDACDAAQDIGNGRCNMGNNIEECGFDGGDCCECTCEDGEYTCGQYYGYACIDPDATCVDDDAVTVDMMENCYDPSRIGNGACDSLLNNEDCAYDGGDCCECTCDPSRYPWYDSGVGCQTGMYGGFACIDPDAPCVDDDIVTAEMMDLCSTGQIGNGYCDDSNNSPECAYDGGDCCECTCESHDDGYEYYCEPGSFACIDPEAECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEECG 328
BLAST of mRNA_Ecto-sp13_S_contig1377.2960.1 vs. uniprot
Match: A0A6H5K4R2_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R2_9PHAE) HSP 1 Score: 455 bits (1170), Expect = 3.770e-159 Identity = 208/248 (83.87%), Postives = 209/248 (84.27%), Query Frame = 1
Query: 175 GFDGGDCCECTCEDGEYTCGQYFGYACIDPGAACVDDDAVTVDMMENCYDPSRIGNGVCDSLLNNEECAYDGGDCCECTCDPSRYPWYDSGEGCQTGMYGGFACIDPDAPCVDDDIVTAEMMDLCSTGQIGNGYCDDSNNSPEC--------------------------------AYDGGDCCECTCESHDDGYEYYCEPGSFACIDPEAECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEECG 822
GFDGGDCCECTCEDGEYTCGQY GYACIDPGAACVDDDAVTVDMMENCYD SRIGNG CDSLLNNEECAYDGGDCCECTCDPSRYPWYDSGEGCQTGMYGGFACIDPDAPCVDDDIVT EMMDLC TGQIGNGYCDD NNSPEC AYDGGDCCECTCESHDDGYEYYC+PGSFACIDP AECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEECG
Sbjct: 2 GFDGGDCCECTCEDGEYTCGQYVGYACIDPGAACVDDDAVTVDMMENCYDASRIGNGACDSLLNNEECAYDGGDCCECTCDPSRYPWYDSGEGCQTGMYGGFACIDPDAPCVDDDIVTVEMMDLCYTGQIGNGYCDDVNNSPECGMICDAPRVKFICTVFRLQKRDRTFSMLLYSCAYDGGDCCECTCESHDDGYEYYCKPGSFACIDPGAECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEECG 249
BLAST of mRNA_Ecto-sp13_S_contig1377.2960.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI) HSP 1 Score: 271 bits (693), Expect = 1.190e-84 Identity = 135/250 (54.00%), Postives = 161/250 (64.40%), Query Frame = 1
Query: 91 TSDQFDACEAAQEIGNGRCDLGNNVEECGFDGGDCCECTCEDGEYTCGQYFGYACIDPGAACVDDDAVTVDMMENCYDPSRIGNGVCDSLLNNEECAYDGGDCCECTCDPSRYPWYDSGEGCQTGMYGGFACIDPDAPCVDDDIVTAEMMDLCSTG-QIGNGYCDDSNNSPECAYDGGDCCECTCESH-----DDGYEYYCEPGSFACIDPEAECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEECG 822
T D D C+ IG+G CD NN E C +DGGDCCECTCE E +AC+DP A CVDDD+VT+DM+ENC + IG+G C LN ECAYDGGDCC CTC+ YD GC FACIDP+A CVDDD +T +M + C IGNG+CD++NN C YDGGDCCECTCE DD ++Y+C FACIDP A CVDDDD T + E+CG+V+ IG+G CD NNKEECG
Sbjct: 50 TVDMIDNCDYPGGIGDGWCDEDNNNELCAYDGGDCCECTCEGSEDDDWHCRNFACVDPNAPCVDDDSVTIDMIENCSWSTGIGDGYCSENLNTPECAYDGGDCCSCTCESP----YDDDWGCMW-----FACIDPEAACVDDDDITVDMFENCEYPVDIGNGWCDEANNIEACGYDGGDCCECTCEYESPYDWDDDWDYHCM--EFACIDPSAPCVDDDDITVDMVENCGYVSGIGNGWCDRNNNKEECG 288
BLAST of mRNA_Ecto-sp13_S_contig1377.2960.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI) HSP 1 Score: 254 bits (650), Expect = 7.980e-81 Identity = 130/240 (54.17%), Postives = 156/240 (65.00%), Query Frame = 1
Query: 124 QEIGNGRCDLGNNVEECGFDGGDCCECTCE---DGEYTCGQYFGYACIDPGAACVDDDAVTVDMMENCYDPSRIGNGVCDSLLNNEECAYDGGDCCECTCDPSRYPWYDSGEGC----QTGMYGGFACIDPDAPCVDDDIVTAEMMDLCSTGQIGNGYCDDSNNSPECAYDGGDCCECTCESHDDGYEYYCEPGS-FACIDPEAECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEEC 819
+E G+G CD NN E CG+DGGDCCECTC D +Y+C ACIDP A CVDDD VTVDM+ENC +GNG CD NNE C YDGGDCCECTC P D+ +G Q G GFACIDP+APCV+DD +T ++++ C + +GNG+CD NN+ CAYDGGDCCECTCE D C S FACIDPEA CVD+D T + E C + G+G CD++NN EEC
Sbjct: 59 REFGDGWCDQENNNEICGYDGGDCCECTCVNAWDDDYSCAA--NSACIDPSAPCVDDDDVTVDMVENCGYVGSVGNGWCDEENNNEGCGYDGGDCCECTCQP-----LDTDDGTDDYFQNGCGNGFACIDPNAPCVNDDDITLDIVENCDSVAVGNGFCDMDNNNEACAYDGGDCCECTCE---DQPNQECGRWSGFACIDPEAPCVDEDSFTVDMVESCKYPGSFGNGWCDEDNNIEEC 288
BLAST of mRNA_Ecto-sp13_S_contig1377.2960.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE) HSP 1 Score: 259 bits (662), Expect = 6.780e-78 Identity = 129/247 (52.23%), Postives = 161/247 (65.18%), Query Frame = 1
Query: 91 TSDQFDACEAAQEIGNGRCDLGNNVEECGFDGGDCCECTCEDGEYT-CGQYFGYACIDPGAACVDDDAVTVDMMENCYDPSRIGNGVCDSLLNNEECAYDGGDCCECTCDPSRYPWYDSGEGCQTGMYGGFACIDPDAPCVDDDIVTAEMMDLCSTGQ-IGNGYCDDSNNSPECAYDGGDCCECTCESH-DDGYEYYCEPGSFACIDPEAECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEECG 822
T ++C+ IG+G C++ NN E C +DGGDCCECTCED CG++ +ACIDP A CVDDD+ TVDM++NC P IGNG CD NNE CAYDGGDCCECTC+ D C+ FAC+DP+APCVDDD VT +M++ C IG+GYC + N+PECAYDGGDCC CTC++ DD + FACIDPEA CV+DDD T + + +C + +GDG CD NN E CG
Sbjct: 207 TVGMVESCDTVS-IGDGYCNMDNNNEACAYDGGDCCECTCEDTPNNRCGRWSSFACIDPAAPCVDDDSFTVDMIDNCEYPGGIGNGWCDVDNNNELCAYDGGDCCECTCESLE----DDDWACRNN----FACVDPNAPCVDDDSVTIDMLENCPWAVGIGDGYCSEDLNTPECAYDGGDCCACTCQNDVDDDWXXX----XFACIDPEAACVNDDDITVDMFVNCEYPVNVGDGWCDQGNNNEACG 440
BLAST of mRNA_Ecto-sp13_S_contig1377.2960.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE) HSP 1 Score: 238 bits (607), Expect = 9.530e-71 Identity = 126/232 (54.31%), Postives = 144/232 (62.07%), Query Frame = 1
Query: 130 IGNGRCDLGNNVEECGFDGGDCCECTCEDGEYTCGQYFGYACIDPGAACVDDDAVTVDMMENCYDPSRIGNGVCDSLLNNEECAYDGGDCCECTCDPSRYPWYDSGEGCQTGMYGGFACIDPDAPCVDDDIVTAEMMDLCSTGQI--GNGYCDDSNNSPECAYDGGDCCECTCESHDDGYEYYCEPGSFACIDPEAECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEEC 819
+ +G CD NN EECG+DGGDCC CTC D Y CG G+ACIDP A C DDD VTVD +ENC S IG+G CD N EEC YDGGDCC CTC D G C FACIDPDAPCV+DD +T +MMD C I G+G+CDD NN+ EC YD GDCC CTC DG Y C F C+DP AECVDDD + + CG + +G CD +NNKEEC
Sbjct: 184 LADGDCDQINNNEECGYDGGDCCFCTCLDDFYECG-IRGFACIDPSAECADDDDVTVDTVENCGVRS-IGDGQCDLDNNREECHYDGGDCCSCTCQVPDDDSGDDGSLCSESTV--FACIDPDAPCVNDDDITVDMMDTCGGHPINFGDGWCDDDNNNKECGYDSGDCCSCTCV---DG-TYECGIVGFDCVDPSAECVDDDYPSTGVTDDCGNAGTVANGYCDFDNNKEEC 407
BLAST of mRNA_Ecto-sp13_S_contig1377.2960.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI) HSP 1 Score: 219 bits (557), Expect = 1.150e-64 Identity = 123/242 (50.83%), Postives = 149/242 (61.57%), Query Frame = 1
Query: 115 EAAQE-----IGNGRCDLGNNVEECGFDGGDCCECTCE---------DGEYTCGQYFGYACIDPGAACVDDDAVTVDMMENCYDPSRIGNGVCDSLLNNEECAYDGGDCCECTCDPSRYPWYDSGEGCQTGMYGGFACIDPDAPCVDDDIVTAEMMDLCSTGQI-GNGYCDDSNNSPECAYDGGDCCECTCESH-DDGYEYYCEPGSFACIDPEAECV------DDDDNTAEQ---YEHCGW 765
EA+QE +G+G CD NN E CG+DGGDCCECTCE D CG+ G+ACIDP A CV+DD +TVD+ E+C D +G+G CD NN CAYDGGDCCECTC+P+ + G GFACIDP APCVDDD VT +M+D C ++ GNG+CD+ NN+ CAYDGGDCCECTCES +D Y E G+F C DP A C DD +T +Q YE W
Sbjct: 99 EASQECDFWDLGDGWCDQVNNNELCGYDGGDCCECTCEVPTDDDWDNDLYVACGE--GFACIDPSAPCVNDDDITVDVDESC-DAVGMGDGYCDMDNNNAACAYDGGDCCECTCEPNN----------KCGGRSGFACIDPGAPCVDDDSVTVDMIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGTFNCKDPNASCFGEETTGSDDFSTDDQPMSYEFVPW 327
BLAST of mRNA_Ecto-sp13_S_contig1377.2960.1 vs. uniprot
Match: A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE) HSP 1 Score: 210 bits (535), Expect = 3.360e-59 Identity = 113/233 (48.50%), Postives = 139/233 (59.66%), Query Frame = 1
Query: 130 IGNGRCDLGNNVEECGFDGGDCCECTC--EDGEYTCGQYFGYACIDPGAACVDDDAVTVDMMENCYDPSRIGNGVCDSLLNNEECAYDGGDCCECTCDPSRYPWYDSGE-GCQTGMYGGFACIDPDAPCVDDDIVTAEMMDLCSTGQIGNGYCDDSNNSPECAYDGGDCCECTCESHDDGYEYYCEPGSFACIDPEAECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEEC 819
+GNG C+ NN+EEC +D GDCC+CTC E + + +AC+DP A CVDDD VT M E+C+ G+G C+ NNE+C YDGGDCCECTC W S E GC FACIDP APCVDDD VTA+ ++ C +G+GYCD NN+ C YDGGDCCECTC S + F CIDP A C D+ T + YE+C V +GD +C NN E C
Sbjct: 145 LGNGYCNEANNIEECDYDAGDCCQCTCGIESDDLSDFSCVDFACVDPNAPCVDDD-VTEGMFEDCF---NFGDGFCNDYNNNEQCGYDGGDCCECTC---VVDW--SAEFGCTE-----FACIDPTAPCVDDDDVTADALENCMIEYLGDGYCDTYNNNEICDYDGGDCCECTCGSDSTDVLVGSDCSDFVCIDPTASCFDES-ITVDMYEYCD-VELLGDSICQPSNNFEVC 361
BLAST of mRNA_Ecto-sp13_S_contig1377.2960.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI) HSP 1 Score: 205 bits (521), Expect = 2.810e-58 Identity = 115/269 (42.75%), Postives = 146/269 (54.28%), Query Frame = 1
Query: 127 EIGNGRCDLGNNVEECGFDGGDCCECTC-----EDGEYTCGQYFGYACIDPGAACVDDDAVTVDMMENCYDPSRIGNGVCDSLLNNEECAYDGGDCCECTC--DPSRYPWYDSGEGCQTGMY---------GGFACIDPDAPCVDDDIVTA--------------------------------EMMDLCS-TGQIGNGYCDDSNNSPECAYDGGDCCECTCESHDDGYEYYCEPGSFACIDPEAECVDDDDNTAEQYEHCGWVTRIGDG 786
++GNG CD NN E CG+D GDCCECTC +D Y G+ACIDP A CVDDD VT+DM+ENC +G+G CD NNE C YDGGDCCECTC P+ W GGFACIDP+A CV+DD +T +M++ C +G+GYC+ NN+ CAYDGGDCC CTC++ D ++ C +FACIDPEA CV+DDD T + + +C + IG+G
Sbjct: 101 DLGNGYCDEDNNNEICGYDFGDCCECTCVSPWDDDDWYCSSDGSGFACIDPAAPCVDDDDVTIDMVENCGYVRGLGDGWCDDWNNNELCGYDGGDCCECTCVAPPANDDWDXXXXXXXXXXXXXXXXGACGGGFACIDPNAACVNDDDITVGMDTPSNKCGWRXXXXXXXXXXXXXXXXXXXXDMIENCEYPWGVGDGYCNQQNNNELCAYDGGDCCSCTCQNDFDD-DWACT--TFACIDPEAACVNDDDITVDMFVNCEYPVDIGNG 366
BLAST of mRNA_Ecto-sp13_S_contig1377.2960.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE) HSP 1 Score: 208 bits (530), Expect = 3.720e-58 Identity = 116/241 (48.13%), Postives = 142/241 (58.92%), Query Frame = 1
Query: 130 IGNGRCDLGNNVEECGFDGGDCCECTC-----EDGEYTCGQYFGYACIDPGAACVDDDAVTVDMMENCYDPSRIGNGVCDSLLNNEECAYDGGDCCECTCDP----SRYPWYDSGEGCQTGMYGGFACIDPDAPCVDDDIVTAEMMDLCSTGQIGNGYCDDSNNSPECAYDGGDCCECTCESHDDGYEYYCEPGS-FACIDPEAECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEECG 822
+G+G CD NN E CG+DGGDCCECTC +D ++ C Y ACIDP A CVDDD +T M+E C +G+G CD NNE C YDGGDCCECTC+ + W D G GFACIDP+APCV+DD +T ++ + C +G+GYCD SNN C G C +C D C S FACIDPEA CVDDD T + ++C W IGDG CD++NN E CG
Sbjct: 78 LGDGWCDQDNNNEICGYDGGDCCECTCVSPWDDDDDWACRNYN--ACIDPDAPCVDDDDITAVMVEECGWVRGVGDGWCDEDNNNELCGYDGGDCCECTCEAPPADDDWDWDDDWYG---PCGSGFACIDPNAPCVNDDDITVDVDESCDAVNMGDGYCDISNNIEAC----GACSWLSCT---DTPNNKCGRWSGFACIDPEAPCVDDDSFTVDMIDNCDWG--IGDGWCDEDNNNELCG 304 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1377.2960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1377.2960.1 >prot_Ecto-sp13_S_contig1377.2960.1 ID=prot_Ecto-sp13_S_contig1377.2960.1|Name=mRNA_Ecto-sp13_S_contig1377.2960.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=273bp MMKTSSNRWLGLLGAAVIMWSSASSVVATTSDQFDACEAAQEIGNGRCDLback to top mRNA from alignment at Ecto-sp13_S_contig1377:12117..16968+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1377.2960.1 ID=mRNA_Ecto-sp13_S_contig1377.2960.1|Name=mRNA_Ecto-sp13_S_contig1377.2960.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4852bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1377:12117..16968+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1377:12117..16968+ >mRNA_Ecto-sp13_S_contig1377.2960.1 ID=mRNA_Ecto-sp13_S_contig1377.2960.1|Name=mRNA_Ecto-sp13_S_contig1377.2960.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=819bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1377:12117..16968+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |