mRNA_Ecto-sp13_S_contig1377.2960.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1377.2960.1
Unique NamemRNA_Ecto-sp13_S_contig1377.2960.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1377.2960.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI)

HSP 1 Score: 584 bits (1505), Expect = 1.550e-209
Identity = 262/274 (95.62%), Postives = 270/274 (98.54%), Query Frame = 1
Query:    1 IMMKTSSNRWLGLLGAAVIMWSSASSVVATTSDQFDACEAAQEIGNGRCDLGNNVEECGFDGGDCCECTCEDGEYTCGQYFGYACIDPGAACVDDDAVTVDMMENCYDPSRIGNGVCDSLLNNEECAYDGGDCCECTCDPSRYPWYDSGEGCQTGMYGGFACIDPDAPCVDDDIVTAEMMDLCSTGQIGNGYCDDSNNSPECAYDGGDCCECTCESHDDGYEYYCEPGSFACIDPEAECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEECG 822
            +MMKTSSNRWLGLLGAAVIMWSSASSVVATTSDQFDAC+AAQ+IGNGRC++GNN+EECGFDGGDCCECTCEDGEYTCGQY+GYACIDP A CVDDDAVTVDMMENCYDPSRIGNG CDSLLNNE+CAYDGGDCCECTCDPSRYPWYDSG GCQTGMYGGFACIDPDAPCVDDDIVTAEMMDLCSTGQIGNGYCDDSNNSPECAYDGGDCCECTCESHDDGYEYYCEPGSFACIDPEAECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEECG
Sbjct:   55 MMMKTSSNRWLGLLGAAVIMWSSASSVVATTSDQFDACDAAQDIGNGRCNMGNNIEECGFDGGDCCECTCEDGEYTCGQYYGYACIDPDATCVDDDAVTVDMMENCYDPSRIGNGACDSLLNNEDCAYDGGDCCECTCDPSRYPWYDSGVGCQTGMYGGFACIDPDAPCVDDDIVTAEMMDLCSTGQIGNGYCDDSNNSPECAYDGGDCCECTCESHDDGYEYYCEPGSFACIDPEAECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEECG 328          
BLAST of mRNA_Ecto-sp13_S_contig1377.2960.1 vs. uniprot
Match: A0A6H5K4R2_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R2_9PHAE)

HSP 1 Score: 455 bits (1170), Expect = 3.770e-159
Identity = 208/248 (83.87%), Postives = 209/248 (84.27%), Query Frame = 1
Query:  175 GFDGGDCCECTCEDGEYTCGQYFGYACIDPGAACVDDDAVTVDMMENCYDPSRIGNGVCDSLLNNEECAYDGGDCCECTCDPSRYPWYDSGEGCQTGMYGGFACIDPDAPCVDDDIVTAEMMDLCSTGQIGNGYCDDSNNSPEC--------------------------------AYDGGDCCECTCESHDDGYEYYCEPGSFACIDPEAECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEECG 822
            GFDGGDCCECTCEDGEYTCGQY GYACIDPGAACVDDDAVTVDMMENCYD SRIGNG CDSLLNNEECAYDGGDCCECTCDPSRYPWYDSGEGCQTGMYGGFACIDPDAPCVDDDIVT EMMDLC TGQIGNGYCDD NNSPEC                                AYDGGDCCECTCESHDDGYEYYC+PGSFACIDP AECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEECG
Sbjct:    2 GFDGGDCCECTCEDGEYTCGQYVGYACIDPGAACVDDDAVTVDMMENCYDASRIGNGACDSLLNNEECAYDGGDCCECTCDPSRYPWYDSGEGCQTGMYGGFACIDPDAPCVDDDIVTVEMMDLCYTGQIGNGYCDDVNNSPECGMICDAPRVKFICTVFRLQKRDRTFSMLLYSCAYDGGDCCECTCESHDDGYEYYCKPGSFACIDPGAECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEECG 249          
BLAST of mRNA_Ecto-sp13_S_contig1377.2960.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 271 bits (693), Expect = 1.190e-84
Identity = 135/250 (54.00%), Postives = 161/250 (64.40%), Query Frame = 1
Query:   91 TSDQFDACEAAQEIGNGRCDLGNNVEECGFDGGDCCECTCEDGEYTCGQYFGYACIDPGAACVDDDAVTVDMMENCYDPSRIGNGVCDSLLNNEECAYDGGDCCECTCDPSRYPWYDSGEGCQTGMYGGFACIDPDAPCVDDDIVTAEMMDLCSTG-QIGNGYCDDSNNSPECAYDGGDCCECTCESH-----DDGYEYYCEPGSFACIDPEAECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEECG 822
            T D  D C+    IG+G CD  NN E C +DGGDCCECTCE  E        +AC+DP A CVDDD+VT+DM+ENC   + IG+G C   LN  ECAYDGGDCC CTC+      YD   GC       FACIDP+A CVDDD +T +M + C     IGNG+CD++NN   C YDGGDCCECTCE       DD ++Y+C    FACIDP A CVDDDD T +  E+CG+V+ IG+G CD  NNKEECG
Sbjct:   50 TVDMIDNCDYPGGIGDGWCDEDNNNELCAYDGGDCCECTCEGSEDDDWHCRNFACVDPNAPCVDDDSVTIDMIENCSWSTGIGDGYCSENLNTPECAYDGGDCCSCTCESP----YDDDWGCMW-----FACIDPEAACVDDDDITVDMFENCEYPVDIGNGWCDEANNIEACGYDGGDCCECTCEYESPYDWDDDWDYHCM--EFACIDPSAPCVDDDDITVDMVENCGYVSGIGNGWCDRNNNKEECG 288          
BLAST of mRNA_Ecto-sp13_S_contig1377.2960.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 7.980e-81
Identity = 130/240 (54.17%), Postives = 156/240 (65.00%), Query Frame = 1
Query:  124 QEIGNGRCDLGNNVEECGFDGGDCCECTCE---DGEYTCGQYFGYACIDPGAACVDDDAVTVDMMENCYDPSRIGNGVCDSLLNNEECAYDGGDCCECTCDPSRYPWYDSGEGC----QTGMYGGFACIDPDAPCVDDDIVTAEMMDLCSTGQIGNGYCDDSNNSPECAYDGGDCCECTCESHDDGYEYYCEPGS-FACIDPEAECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEEC 819
            +E G+G CD  NN E CG+DGGDCCECTC    D +Y+C      ACIDP A CVDDD VTVDM+ENC     +GNG CD   NNE C YDGGDCCECTC P      D+ +G     Q G   GFACIDP+APCV+DD +T ++++ C +  +GNG+CD  NN+  CAYDGGDCCECTCE   D     C   S FACIDPEA CVD+D  T +  E C +    G+G CD++NN EEC
Sbjct:   59 REFGDGWCDQENNNEICGYDGGDCCECTCVNAWDDDYSCAA--NSACIDPSAPCVDDDDVTVDMVENCGYVGSVGNGWCDEENNNEGCGYDGGDCCECTCQP-----LDTDDGTDDYFQNGCGNGFACIDPNAPCVNDDDITLDIVENCDSVAVGNGFCDMDNNNEACAYDGGDCCECTCE---DQPNQECGRWSGFACIDPEAPCVDEDSFTVDMVESCKYPGSFGNGWCDEDNNIEEC 288          
BLAST of mRNA_Ecto-sp13_S_contig1377.2960.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 259 bits (662), Expect = 6.780e-78
Identity = 129/247 (52.23%), Postives = 161/247 (65.18%), Query Frame = 1
Query:   91 TSDQFDACEAAQEIGNGRCDLGNNVEECGFDGGDCCECTCEDGEYT-CGQYFGYACIDPGAACVDDDAVTVDMMENCYDPSRIGNGVCDSLLNNEECAYDGGDCCECTCDPSRYPWYDSGEGCQTGMYGGFACIDPDAPCVDDDIVTAEMMDLCSTGQ-IGNGYCDDSNNSPECAYDGGDCCECTCESH-DDGYEYYCEPGSFACIDPEAECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEECG 822
            T    ++C+    IG+G C++ NN E C +DGGDCCECTCED     CG++  +ACIDP A CVDDD+ TVDM++NC  P  IGNG CD   NNE CAYDGGDCCECTC+       D    C+      FAC+DP+APCVDDD VT +M++ C     IG+GYC +  N+PECAYDGGDCC CTC++  DD +        FACIDPEA CV+DDD T + + +C +   +GDG CD  NN E CG
Sbjct:  207 TVGMVESCDTVS-IGDGYCNMDNNNEACAYDGGDCCECTCEDTPNNRCGRWSSFACIDPAAPCVDDDSFTVDMIDNCEYPGGIGNGWCDVDNNNELCAYDGGDCCECTCESLE----DDDWACRNN----FACVDPNAPCVDDDSVTIDMLENCPWAVGIGDGYCSEDLNTPECAYDGGDCCACTCQNDVDDDWXXX----XFACIDPEAACVNDDDITVDMFVNCEYPVNVGDGWCDQGNNNEACG 440          
BLAST of mRNA_Ecto-sp13_S_contig1377.2960.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 238 bits (607), Expect = 9.530e-71
Identity = 126/232 (54.31%), Postives = 144/232 (62.07%), Query Frame = 1
Query:  130 IGNGRCDLGNNVEECGFDGGDCCECTCEDGEYTCGQYFGYACIDPGAACVDDDAVTVDMMENCYDPSRIGNGVCDSLLNNEECAYDGGDCCECTCDPSRYPWYDSGEGCQTGMYGGFACIDPDAPCVDDDIVTAEMMDLCSTGQI--GNGYCDDSNNSPECAYDGGDCCECTCESHDDGYEYYCEPGSFACIDPEAECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEEC 819
            + +G CD  NN EECG+DGGDCC CTC D  Y CG   G+ACIDP A C DDD VTVD +ENC   S IG+G CD   N EEC YDGGDCC CTC        D G  C       FACIDPDAPCV+DD +T +MMD C    I  G+G+CDD NN+ EC YD GDCC CTC    DG  Y C    F C+DP AECVDDD  +    + CG    + +G CD +NNKEEC
Sbjct:  184 LADGDCDQINNNEECGYDGGDCCFCTCLDDFYECG-IRGFACIDPSAECADDDDVTVDTVENCGVRS-IGDGQCDLDNNREECHYDGGDCCSCTCQVPDDDSGDDGSLCSESTV--FACIDPDAPCVNDDDITVDMMDTCGGHPINFGDGWCDDDNNNKECGYDSGDCCSCTCV---DG-TYECGIVGFDCVDPSAECVDDDYPSTGVTDDCGNAGTVANGYCDFDNNKEEC 407          
BLAST of mRNA_Ecto-sp13_S_contig1377.2960.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 1.150e-64
Identity = 123/242 (50.83%), Postives = 149/242 (61.57%), Query Frame = 1
Query:  115 EAAQE-----IGNGRCDLGNNVEECGFDGGDCCECTCE---------DGEYTCGQYFGYACIDPGAACVDDDAVTVDMMENCYDPSRIGNGVCDSLLNNEECAYDGGDCCECTCDPSRYPWYDSGEGCQTGMYGGFACIDPDAPCVDDDIVTAEMMDLCSTGQI-GNGYCDDSNNSPECAYDGGDCCECTCESH-DDGYEYYCEPGSFACIDPEAECV------DDDDNTAEQ---YEHCGW 765
            EA+QE     +G+G CD  NN E CG+DGGDCCECTCE         D    CG+  G+ACIDP A CV+DD +TVD+ E+C D   +G+G CD   NN  CAYDGGDCCECTC+P+           + G   GFACIDP APCVDDD VT +M+D C   ++ GNG+CD+ NN+  CAYDGGDCCECTCES  +D Y    E G+F C DP A C        DD +T +Q   YE   W
Sbjct:   99 EASQECDFWDLGDGWCDQVNNNELCGYDGGDCCECTCEVPTDDDWDNDLYVACGE--GFACIDPSAPCVNDDDITVDVDESC-DAVGMGDGYCDMDNNNAACAYDGGDCCECTCEPNN----------KCGGRSGFACIDPGAPCVDDDSVTVDMIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGTFNCKDPNASCFGEETTGSDDFSTDDQPMSYEFVPW 327          
BLAST of mRNA_Ecto-sp13_S_contig1377.2960.1 vs. uniprot
Match: A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 3.360e-59
Identity = 113/233 (48.50%), Postives = 139/233 (59.66%), Query Frame = 1
Query:  130 IGNGRCDLGNNVEECGFDGGDCCECTC--EDGEYTCGQYFGYACIDPGAACVDDDAVTVDMMENCYDPSRIGNGVCDSLLNNEECAYDGGDCCECTCDPSRYPWYDSGE-GCQTGMYGGFACIDPDAPCVDDDIVTAEMMDLCSTGQIGNGYCDDSNNSPECAYDGGDCCECTCESHDDGYEYYCEPGSFACIDPEAECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEEC 819
            +GNG C+  NN+EEC +D GDCC+CTC  E  + +      +AC+DP A CVDDD VT  M E+C+     G+G C+   NNE+C YDGGDCCECTC      W  S E GC       FACIDP APCVDDD VTA+ ++ C    +G+GYCD  NN+  C YDGGDCCECTC S         +   F CIDP A C D+   T + YE+C  V  +GD +C   NN E C
Sbjct:  145 LGNGYCNEANNIEECDYDAGDCCQCTCGIESDDLSDFSCVDFACVDPNAPCVDDD-VTEGMFEDCF---NFGDGFCNDYNNNEQCGYDGGDCCECTC---VVDW--SAEFGCTE-----FACIDPTAPCVDDDDVTADALENCMIEYLGDGYCDTYNNNEICDYDGGDCCECTCGSDSTDVLVGSDCSDFVCIDPTASCFDES-ITVDMYEYCD-VELLGDSICQPSNNFEVC 361          
BLAST of mRNA_Ecto-sp13_S_contig1377.2960.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 2.810e-58
Identity = 115/269 (42.75%), Postives = 146/269 (54.28%), Query Frame = 1
Query:  127 EIGNGRCDLGNNVEECGFDGGDCCECTC-----EDGEYTCGQYFGYACIDPGAACVDDDAVTVDMMENCYDPSRIGNGVCDSLLNNEECAYDGGDCCECTC--DPSRYPWYDSGEGCQTGMY---------GGFACIDPDAPCVDDDIVTA--------------------------------EMMDLCS-TGQIGNGYCDDSNNSPECAYDGGDCCECTCESHDDGYEYYCEPGSFACIDPEAECVDDDDNTAEQYEHCGWVTRIGDG 786
            ++GNG CD  NN E CG+D GDCCECTC     +D  Y      G+ACIDP A CVDDD VT+DM+ENC     +G+G CD   NNE C YDGGDCCECTC   P+   W                     GGFACIDP+A CV+DD +T                                 +M++ C     +G+GYC+  NN+  CAYDGGDCC CTC++  D  ++ C   +FACIDPEA CV+DDD T + + +C +   IG+G
Sbjct:  101 DLGNGYCDEDNNNEICGYDFGDCCECTCVSPWDDDDWYCSSDGSGFACIDPAAPCVDDDDVTIDMVENCGYVRGLGDGWCDDWNNNELCGYDGGDCCECTCVAPPANDDWDXXXXXXXXXXXXXXXXGACGGGFACIDPNAACVNDDDITVGMDTPSNKCGWRXXXXXXXXXXXXXXXXXXXXDMIENCEYPWGVGDGYCNQQNNNELCAYDGGDCCSCTCQNDFDD-DWACT--TFACIDPEAACVNDDDITVDMFVNCEYPVDIGNG 366          
BLAST of mRNA_Ecto-sp13_S_contig1377.2960.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 3.720e-58
Identity = 116/241 (48.13%), Postives = 142/241 (58.92%), Query Frame = 1
Query:  130 IGNGRCDLGNNVEECGFDGGDCCECTC-----EDGEYTCGQYFGYACIDPGAACVDDDAVTVDMMENCYDPSRIGNGVCDSLLNNEECAYDGGDCCECTCDP----SRYPWYDSGEGCQTGMYGGFACIDPDAPCVDDDIVTAEMMDLCSTGQIGNGYCDDSNNSPECAYDGGDCCECTCESHDDGYEYYCEPGS-FACIDPEAECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEECG 822
            +G+G CD  NN E CG+DGGDCCECTC     +D ++ C  Y   ACIDP A CVDDD +T  M+E C     +G+G CD   NNE C YDGGDCCECTC+       + W D   G       GFACIDP+APCV+DD +T ++ + C    +G+GYCD SNN   C    G C   +C    D     C   S FACIDPEA CVDDD  T +  ++C W   IGDG CD++NN E CG
Sbjct:   78 LGDGWCDQDNNNEICGYDGGDCCECTCVSPWDDDDDWACRNYN--ACIDPDAPCVDDDDITAVMVEECGWVRGVGDGWCDEDNNNELCGYDGGDCCECTCEAPPADDDWDWDDDWYG---PCGSGFACIDPNAPCVNDDDITVDVDESCDAVNMGDGYCDISNNIEAC----GACSWLSCT---DTPNNKCGRWSGFACIDPEAPCVDDDSFTVDMIDNCDWG--IGDGWCDEDNNNELCG 304          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1377.2960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEP6_ECTSI1.550e-20995.62Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5K4R2_9PHAE3.770e-15983.87LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G3F4_ECTSI1.190e-8454.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0S4_ECTSI7.980e-8154.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM92_9PHAE6.780e-7852.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTT4_9PHAE9.530e-7154.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4F9_ECTSI1.150e-6450.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJK5_9PHAE3.360e-5948.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI87_ECTSI2.810e-5842.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXR2_9PHAE3.720e-5848.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1377contigEcto-sp13_S_contig1377:12117..16968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score163.3
Seed ortholog evalue1.6e-37
Seed eggNOG ortholog2880.D7G5Y7
Model size822
Hectar predicted targeting categorysignal peptide
Exons4
EggNOG OGs2BFIX@1,2S176@2759
Cds size819
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462735.0584028-UTR-Ecto-sp13_S_contig1377:12116..121191681462735.0584028-UTR-Ecto-sp13_S_contig1377:12116..12119Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1377 12117..12119 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462735.0740142-CDS-Ecto-sp13_S_contig1377:12119..122911681462735.0740142-CDS-Ecto-sp13_S_contig1377:12119..12291Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1377 12120..12291 +
1681462735.0859408-CDS-Ecto-sp13_S_contig1377:14300..145041681462735.0859408-CDS-Ecto-sp13_S_contig1377:14300..14504Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1377 14301..14504 +
1681462735.0973616-CDS-Ecto-sp13_S_contig1377:15008..152361681462735.0973616-CDS-Ecto-sp13_S_contig1377:15008..15236Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1377 15009..15236 +
1681462735.109316-CDS-Ecto-sp13_S_contig1377:16753..169681681462735.109316-CDS-Ecto-sp13_S_contig1377:16753..16968Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1377 16754..16968 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1377.2960.1prot_Ecto-sp13_S_contig1377.2960.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1377 12120..16968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1377.2960.1

>prot_Ecto-sp13_S_contig1377.2960.1 ID=prot_Ecto-sp13_S_contig1377.2960.1|Name=mRNA_Ecto-sp13_S_contig1377.2960.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=273bp
MMKTSSNRWLGLLGAAVIMWSSASSVVATTSDQFDACEAAQEIGNGRCDL
GNNVEECGFDGGDCCECTCEDGEYTCGQYFGYACIDPGAACVDDDAVTVD
MMENCYDPSRIGNGVCDSLLNNEECAYDGGDCCECTCDPSRYPWYDSGEG
CQTGMYGGFACIDPDAPCVDDDIVTAEMMDLCSTGQIGNGYCDDSNNSPE
CAYDGGDCCECTCESHDDGYEYYCEPGSFACIDPEAECVDDDDNTAEQYE
HCGWVTRIGDGMCDDENNKEECG
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mRNA from alignment at Ecto-sp13_S_contig1377:12117..16968+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1377.2960.1 ID=mRNA_Ecto-sp13_S_contig1377.2960.1|Name=mRNA_Ecto-sp13_S_contig1377.2960.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4852bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1377:12117..16968+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCATGATGAAGACTTCTTCGAACCGCTGGCTGGGTCTCCTCGGTGCTGC GGTCATCATGTGGTCGTCTGCTAGTAGTGTTGTCGCAACCACCAGCGACC AGTTTGACGCCTGCGAGGCGGCGCAAGAGATCGGAAACGGGCGCTGTGAC CTCGGCAACAACGTCGAAGAATGCGGTACGTCTTGGCACGTGTCATGAAT ACAGGATGGAGGCCGACAAACTTGGTGGTGCTCACAATGCCTCTCTGATA CCGCACGCTTCTTTTGCCACCAGCAGAAAGCGCCGAAAAGGTATGCTATC GTGCAGTCGGTGGGGCGTAACGACCTCCACCGATAGAACGAGCGTATATA TGCACACACTGGCTGCCACACACCACAAGCGCGTGGAGGCCGCTGAAGAA TGTTCTGGTGCGAAGGACTGACCATCTCTTGCGTCATCATCGTAGACTTC TCTTCCCCCAAAGGAGTCACGAATCGATGAGGAAAATATTTCATGCTCAA TACGAAGCAAAGGGAAGGTCAGCATGCATCACAGCAACAGAGGTTTTCTG TTGTGCGTTGTGCGGTGCCGCTGAAGCTGCGCCTGATCGCCGTTTCTCTC GCGAAAGTAAAACTGACAGCAAGATACCCCGATGCGAAACAGACGTTCAT TGAGACCACATCAGTGTATGTGTATTCCTTGTGTAAGCATCAGAAGAGCC CACCGAACATCAAACGTACTGAGGGGAGGCCATCATGTATCACAGCAACA GAGACTTTTATGCGGTGCGTCGTGCACTGCCGCAGAAGTTGTGCCTGATC GCCAGTCGCTGTCGTAAGAACTTATTTCGATGACAAGACACGGGATTCTT GTCCGAATCAACAGTTCCAACAAAGTTAACCCGAGTGATGCGAACCGGAA CAGACATAAACATGCGAATGTATGGGATGCATAGCAGAAAGCCCGCTGAG CAGCAAACAAACTTGTATTGCTCAGGAACTCGATAGCACTGAAGGTGTAC GGTGTGTTGTTGCTGCTGCTATCATACACAGCAGAATACGACAGGAGCAG CAAAGGATAAAACTATGTAGGACCTGCTTGCTTGTTCTGGATTGGTTGTG TGTGCGTCAAAGAGAAAAGAGGGAAACGGGTAGGCGCTGCTGATTCGTCC ATGAGAGTTCTGACGCAGCGCGTCCATTGTTGCTCTTGTGCGATCCCCCA CATGCGGTTTACCTTGCCGAGAAGTTAAGTTTTGCGCAGCATGCATTTCC AAAGGCAAGACCGGTTGAAAACGAGAAATCAAAAATGTTCAGCCGGAGAA GAGTATAATTTCTGATCCAACACCAAACTATTTTTTGTCGGGGAGCAGAA ACTACACTTGTATGACAAAAAACGGTCTAAATGAAACCGTCTTAGCCCGC GAAACGAAATGTGCAGTAACGGGTGCCCATAAAAAGTCATCCCGCGCACC ACGGTACCCCCCCACCCCCGGGCGCGCCGAAAAAACGTTTTCCGCTTTTT TCTTTTGAAGGGGATTTGAGCCCACTTGACGCAAGCTGCATGTGAGGGAC ACAACGTGTTCTACTAGTCCTCATTGATTGGGTTAGGTACCCTTCTTGAT GTGATACGTACCCGTATTGTGTGATCATGGGTCCGGACCTCGCAAGAGAG GATCCTAGCTCGCGCATAGGGTACCCCAAAGAAAAATGGGTTCCCCACCG CGGGCCCCCTTTCTTTGCACGGGAAATGAGAGTATCGTGACCCCGCCCCC CCCCTCCGAAAACCTCCCAAAAATAAGAAAATGGGCACGTAGATTCAGAC TATTTTTTTTCGGGCGCCCGGGCAGCTTTACATAGTACGGAGTGTGTCCC CCTTTTGATGAGGAAATGGACATACTCCGATACCAAACAAACCGTTTTTG GGTCAATTCTGTTGTTTGGTTGGGATTTGTTTTTCGACATTACCGGGTGC TCCAACTGTCAGTAGTGCGGGAGATGGCGCAAGTTGATGCGAGGTACTCT CTGCAGTTTTTACCGAAACCAACCGCAGCCGCGCCGAAGGTTGAGATTAC AACGATGCAACCAATAAAAGCATTAGACCATGTGCTTTTGCGTCGCCCGC GGGAGGCAAGCGCACCTACCTCCCGAAAGGGAGCCTTGTCTCATGTATAC CATTTGACTTTGTCCCTCGCTCGCCGTCCCCAAGGCTTCGATGGCGGCGA TTGCTGCGAGTGCACCTGCGAGGACGGAGAATATACCTGTGGCCAGTACT TTGGTTACGCCTGCATCGACCCCGGCGCCGCGTGCGTGGACGACGACGCA GTCACGGTTGACATGATGGAGAACTGCTACGACCCGTCGCGCATTGGAAA CGGCGTCTGTGACAGCCTACTGAACAATGAAGAATGCGGTAAGTCTATGT GAATAGTTGCGATTAACCGTTTGCCAAACCCTCAGATACTTTCTGGTGAC GTGTGTTCTCCATGATGGGTGTCATGCTGTCGCTACACGGAACGTACTGG GGTGTCCACCTAATGAAACGAGGTGGCACAAGAGAGGCGTAGGCTCGTGC CTTTACTCTCCCATGAGCCCCAGCCGCTGTTCTCCTATGTTGGCAGTGTA TAGCCGTTCCGATCTCTCTTGGCGCTCAGTAATGTGTGACTGCTGTTGAT ACGTATATGTAGCTTCGTTGTCCATCTGCCCAAGTGCATGTCTACAGTGT CCGCTTCTTCCCCATCTCATCGAGCGAACGGGGTGATGTACATATGGACA CGTTGAAACAACGCGTTTTTTGGCCTCACTGTGTCCTGAAAAAATACCCT CAATCAGTTGACCCTGGCAAGTTCCGAAAGCTTGGGGGTAAAGTTCGACC ATGATCCTTAAAGCAATATTTTGTTCGATCCCCGCTCCCCAGCTTATGAT GGTGGAGATTGCTGCGAGTGCACGTGTGACCCTTCTAGGTATCCATGGTA CGATTCCGGAGAGGGTTGCCAAACCGGCATGTATGGCGGCTTCGCCTGCA TTGACCCGGATGCGCCGTGCGTGGACGACGACATCGTCACCGCCGAGATG ATGGACCTGTGCTCCACTGGCCAGATCGGGAATGGGTACTGCGACGACAG CAACAACAGCCCAGAATGCGGTATGGTCTGTAACGCGCCGCGTGTCAATT TTGTTTTGCACGATGTGTCGCCTACAAGAGAGAGACGGTACCTTATCCAT GCTCGTTTGATTTTGTGGTTGGGCGTGTGTTCCTGTATGCCAGGTTTTTG GGAATTAGCGCCCACAAGTACAAGGTGGCAACGACAGCACCACCTTTCCA GAATGTGCACATTCTTCGGGATGGTGTGTAGTCTAGATGGAGTCCGGTCC ATTTTGACGGGAGTCTCCCACGCCATTCCATGAATGGACGCGACCTTTCT ATGGAAGCTGTACGTGCTTGAAAGTTGGTACGTCCGTGGAAGTAACACAT AGCTGCCATGGAAGTTCATCCAAGTTTTTACTGAAAGTGCCTTCCACGAA AGTACGGCGCTCATCAAGGGTTGTCACTCCATGATAAGTCGTTTATTGGT AGTTCACACTCCAGATTTCTTTCTGAAGCAACCTCTACTTTCATGAACGC ATCCATGGCAGCGATATTTCGACTTCCACAGTGGAAGTGGATATTCGCTA CTTCCATGGACGTCGAAATTCCACCTCCATGGAAGTGCGACAAAACATTC CAGTGTTGTGGGGAGATCGCTGAACCTTGTCTACAGTCAATCCACGCGAA TGCGTAGAATACATCAACCGTTGGGGCACATTTACTTTACGTGAACCTGC GTATTTTTCAACAATGGCAGGGGTACCGTTTGAACATTACAATCTCTCAC CACTGACAGTTCTGCTGAACCGCCCATGGGTCACCCATGCGTCACCCATG GGCGGGCCGTGACGTGCCCATGAAGTGCCCACCGTGGGCACTTGAACCTA GAACTTCGCCACCGGCATATCGACCTACATGCATAGCTTAGCCACCTGCA CGTCAACCTAAACTAGCCACCAGCGCCAATCTGGCACGAATCGTGTGGGC TTGGGGATAGGGCGAGGGTTACCGATAGGGTTATTAGCGGCTATAATGCC CGTTCCAAAGCAATTGATCTACTGTTTAGGAATACATTAGTTCCGGTTGA AGGGCTCTCATTGGCCGGCCGTGGGCTTTGCCATGGGCATACCGGTGGGT CGCCCATGGGCACCACGTGGTGCCCATGGGCGACTCATGGGTAACCCATG GGCTGTCGATGGGTGTTCCGTGGGCGTTTTAGCAAAACTGAAGAAAGTGG GAAACCCGAAAATTATGACGCGGCAGCCAGCGAGGAGGAGAAAATGTCCA TGCAAGGCGAATAAATCAGCCGTCAACCCCACATCCTTCTCTACCACTGC ACCACAAGTCTTGTCTGTACTTCCAAATGTTATTGAGAAAAATCTAAAAA TATGAAAGAAAGAACACCCACCCACCCGAGACGGGACTCCCGTGGATTTG TGTAGGTAGAATTCTTTACAGAGGGGGTTTACAGTGTCGGCCGGGAGTAA ACCACCTGTCGAGAAAACACATACCAAACTCCCCGTACACGTGTTTTTCT TCTTTTTCTCGTTTTCCTCTATTGCCTGCCCGCTCAGCGTACGATGGTGG TGATTGCTGTGAGTGCACCTGTGAGTCGCACGACGATGGCTACGAGTACT ATTGTGAACCCGGAAGTTTCGCCTGCATCGACCCTGAGGCGGAGTGCGTG GACGACGACGACAATACCGCGGAGCAGTACGAGCACTGCGGCTGGGTAAC GCGCATCGGGGATGGCATGTGTGATGACGAAAACAACAAGGAAGAATGCG GT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1377:12117..16968+

>mRNA_Ecto-sp13_S_contig1377.2960.1 ID=mRNA_Ecto-sp13_S_contig1377.2960.1|Name=mRNA_Ecto-sp13_S_contig1377.2960.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=819bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1377:12117..16968+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGAAGACTTCTTCGAACCGCTGGCTGGGTCTCCTCGGTGCTGCGGT
CATCATGTGGTCGTCTGCTAGTAGTGTTGTCGCAACCACCAGCGACCAGT
TTGACGCCTGCGAGGCGGCGCAAGAGATCGGAAACGGGCGCTGTGACCTC
GGCAACAACGTCGAAGAATGCGGCTTCGATGGCGGCGATTGCTGCGAGTG
CACCTGCGAGGACGGAGAATATACCTGTGGCCAGTACTTTGGTTACGCCT
GCATCGACCCCGGCGCCGCGTGCGTGGACGACGACGCAGTCACGGTTGAC
ATGATGGAGAACTGCTACGACCCGTCGCGCATTGGAAACGGCGTCTGTGA
CAGCCTACTGAACAATGAAGAATGCGCTTATGATGGTGGAGATTGCTGCG
AGTGCACGTGTGACCCTTCTAGGTATCCATGGTACGATTCCGGAGAGGGT
TGCCAAACCGGCATGTATGGCGGCTTCGCCTGCATTGACCCGGATGCGCC
GTGCGTGGACGACGACATCGTCACCGCCGAGATGATGGACCTGTGCTCCA
CTGGCCAGATCGGGAATGGGTACTGCGACGACAGCAACAACAGCCCAGAA
TGCGCGTACGATGGTGGTGATTGCTGTGAGTGCACCTGTGAGTCGCACGA
CGATGGCTACGAGTACTATTGTGAACCCGGAAGTTTCGCCTGCATCGACC
CTGAGGCGGAGTGCGTGGACGACGACGACAATACCGCGGAGCAGTACGAG
CACTGCGGCTGGGTAACGCGCATCGGGGATGGCATGTGTGATGACGAAAA
CAACAAGGAAGAATGCGGT
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