mRNA_Ecto-sp13_S_contig13766.2958.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13766.2958.1 vs. uniprot
Match: D7FTX9_ECTSI (U3 small nucleolar ribonucleoprotein protein MPP10 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTX9_ECTSI) HSP 1 Score: 432 bits (1110), Expect = 8.520e-147 Identity = 233/239 (97.49%), Postives = 236/239 (98.74%), Query Frame = 1
Query: 1 RDLQGPTVRKEAPHLSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKNELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQAQAAQKLVSKLNPGLGNKYEKAKMMRDIQGAKNVTTATGGEESTGREFSTSAKFFSQLQESVTASVKSAGKGMEGDVKDMNKKAAQLRL 717
RDLQGPTVRKEAPHLSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKNELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQA+AAQKLVSKLNPGLGNKYEKAKMMRDIQGAKNVTTATGGEESTGREFSTSAKFFSQLQESVTASVKS GKGM+GD KD +KKAAQLRL
Sbjct: 375 RDLQGPTVRKEAPHLSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKNELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQAEAAQKLVSKLNPGLGNKYEKAKMMRDIQGAKNVTTATGGEESTGREFSTSAKFFSQLQESVTASVKSTGKGMDGDAKDTSKKAAQLRL 613
BLAST of mRNA_Ecto-sp13_S_contig13766.2958.1 vs. uniprot
Match: A0A835YNW6_9STRA (Mpp10 protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNW6_9STRA) HSP 1 Score: 229 bits (583), Expect = 5.340e-71 Identity = 123/211 (58.29%), Postives = 158/211 (74.88%), Query Frame = 1
Query: 25 RKEAPHLSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKNELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQAQAAQKLVSKLNPGLGNKYEKAKMMRDIQGAKNVTTATGGEESTGREFSTSAKFFSQLQESVTASVKSA 657
R++AP +S DKS EGL +YEKE+LK+ +GV EDDP K LK EL+ F++LCGKLDALCNFH+ P+A +PE+ V DV AIAMEE LP+ V+ A+ LAPEE+Y +KRGR A FLEGGAEM Q++R R+R +KK R KAR+Q +A QKLVS+ NPGLGN YE+ K++ DI+GA+NV + TG++FSTS KFF LQ+ V VK A
Sbjct: 87 REDAPEVSMDKSTEGLAAVYEKEYLKQALGVEEDDPSKDLKEELRRDFARLCGKLDALCNFHFRPRAHLPEVAVATDVPAIAMEEALPTGVSTADGLAPEEVYARKRGRRAVFLEGGAEMDQDERNRARLAKKRSRNKARKQTEAEQKLVSRANPGLGNPYEQRKLLADIRGARNVMEGAA-DARTGKDFSTSTKFFGALQKQVAKGVKDA 296
BLAST of mRNA_Ecto-sp13_S_contig13766.2958.1 vs. uniprot
Match: A0A2P4YHT8_9STRA (U3 small nucleolar ribonucleoprotein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YHT8_9STRA) HSP 1 Score: 189 bits (481), Expect = 6.600e-57 Identity = 108/207 (52.17%), Postives = 148/207 (71.50%), Query Frame = 1
Query: 43 LSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKNELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQAQAAQKLVSKLNPGLGNKYEKAKMMRDIQGAKNVTTATGGEESTGREFSTSAKFFSQLQESVTASVKSAGK 663
+S +KSKEGLGE+YEKE++K MG DD K + E++ +F LC KLDAL N+H+TPK A+ E++V+ V AIAMEEV+P SV+DA APEE+Y+KKR R L+ EM+Q +RK R++KK RRK +RQ + ++LV+KLNPGLGNKYEK KM+ I GAKN+TT E S+ ++FS S +FFS+LQ+ V +++A K
Sbjct: 19 VSMEKSKEGLGEIYEKEYMKTAMGFEADDESKQDQEEIEVMFKSLCWKLDALSNYHFTPKPAVKELQVKPAVPAIAMEEVVPISVSDANLKAPEEVYEKKRKRGEAVLQSKEEMTQTERKALRNAKKHARRKEKRQREFDERLVAKLNPGLGNKYEKKKMLESIAGAKNITTGKQIEGSS-KQFSNSKEFFSRLQDEVQEKIRNASK 224
BLAST of mRNA_Ecto-sp13_S_contig13766.2958.1 vs. uniprot
Match: A0A6V1QZP6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QZP6_HETAK) HSP 1 Score: 195 bits (495), Expect = 7.180e-56 Identity = 116/243 (47.74%), Postives = 167/243 (68.72%), Query Frame = 1
Query: 25 RKEAPHLSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKNELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQAQAAQKLVSKLNPGLGNKYEKAKMMRDIQGAKNVTTATGGEESTG-----REFSTSAKFFSQLQESVTA-------SVKSAGKGMEGDVKDMNKKAAQLRL 717
R E P +S +KSK GLGELYEKE+LK+ MGV ++DP K K E+ +F KLC KLD+L NFH+TPK IP+++V+ +V AIA+EEVLP++V+ A+ALAPEE++ K +GR+ L+ EM QE+RKR+R+ KKA RRK R++ +A ++LV+KLNPG+GN YEK K++ ++ +KNV + S+G +F TSAKFF++LQE + S K+ G+ M + K+A L+L
Sbjct: 262 RAELPEVSTEKSKAGLGELYEKEYLKQVMGVEDEDPNKAEKEEMAKIFKKLCYKLDSLSNFHFTPKPVIPDLQVKVNVPAIALEEVLPAAVSAADALAPEEVHAKAKGRKG-VLQAREEMEQEERKRARAGKKAARRKDRQRKEADKRLVAKLNPGMGNPYEKEKILESLK-SKNVVEGKNLQSSSGDPDGSSDFKTSAKFFAKLQEQTSKEFANAADSHKNRGESMGNKRRKKGSKSASLKL 502
BLAST of mRNA_Ecto-sp13_S_contig13766.2958.1 vs. uniprot
Match: G4YNZ1_PHYSP (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=G4YNZ1_PHYSP) HSP 1 Score: 187 bits (476), Expect = 1.170e-54 Identity = 107/205 (52.20%), Postives = 146/205 (71.22%), Query Frame = 1
Query: 43 LSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKNELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQAQAAQKLVSKLNPGLGNKYEKAKMMRDIQGAKNVTTATGGEESTGREFSTSAKFFSQLQESVTASVKSA 657
+S +KSKEGLGE+YEKE++K MG DD K + E++ +F LC KLDAL N+H+TPK A+ E++V+ V AIAMEEV+P SV+DA APEE+Y KKR R L+ EM+Q +RK R++KK RRK +RQ + ++LV+KLNPGLGNKYEK KM+ I GAKN+TT E S+ ++FS S +FFS+LQ+ V +++A
Sbjct: 137 VSMEKSKEGLGEIYEKEYMKTAMGFEADDESKQDQEEIEVMFKSLCWKLDALSNYHFTPKPAVKELQVKPAVPAIAMEEVVPISVSDANLKAPEEVYDKKRKRGEAVLQSKEEMTQSERKALRNAKKHARRKEKRQREFDERLVAKLNPGLGNKYEKKKMLESIAGAKNITTGKQIEGSS-KQFSNSKEFFSRLQDEVQEKIRNA 340
BLAST of mRNA_Ecto-sp13_S_contig13766.2958.1 vs. uniprot
Match: H3GM34_PHYRM (U3 small nucleolar ribonucleoprotein protein MPP10 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GM34_PHYRM) HSP 1 Score: 190 bits (482), Expect = 3.250e-53 Identity = 109/205 (53.17%), Postives = 146/205 (71.22%), Query Frame = 1
Query: 43 LSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKNELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQAQAAQKLVSKLNPGLGNKYEKAKMMRDIQGAKNVTTATGGEESTGREFSTSAKFFSQLQESVTASVKSA 657
+S +KSKEGLGE+YEKE++K MG DD K + E++ +F LC KLDAL N+H+TPK A+ E+KV+ V AIAMEEV+P SV+DA APEE+Y+KKR R L+ EM+Q +RK R++KK RRK RQ + ++LV+KLNPGLGNKYEK KM+ I GAKN+TT E S+ ++FS S +FFS+LQ+ V ++SA
Sbjct: 388 VSMEKSKEGLGEIYEKEYMKTAMGFEADDESKQDQEEIEVMFKSLCWKLDALSNYHFTPKPAVKELKVKPAVPAIAMEEVVPISVSDANLKAPEEVYEKKRKRGEAVLQSKEEMTQTERKALRNAKKHARRKENRQREFDERLVAKLNPGLGNKYEKKKMLESIAGAKNITTGKQIEGSS-KQFSNSKEFFSRLQDEVQEKIRSA 591
BLAST of mRNA_Ecto-sp13_S_contig13766.2958.1 vs. uniprot
Match: A0A2D4C329_PYTIN (U3 small nucleolar ribonucleoprotein, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C329_PYTIN) HSP 1 Score: 182 bits (461), Expect = 8.760e-53 Identity = 107/209 (51.20%), Postives = 142/209 (67.94%), Query Frame = 1
Query: 25 RKEAPHLSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKNELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQAQAAQKLVSKLNPGLGNKYEKAKMMRDIQGAKNVTTATGGEESTGREFSTSAKFFSQLQESVTASVK 651
+K+ +S +KSKEGLGE+YEKE+LK MG DD K + E+ +F LC KLDAL N+ +TPK + E++V+ V AIAMEEV+P SV+DA APEE+Y KKR R L+ EM+QE+R R +KK RRK +RQ +A ++LV+KLNPGLGNKYEK KM+ I AKN+T E ST ++FS S +FFS+LQE V ++
Sbjct: 97 KKKLVDVSMEKSKEGLGEIYEKEYLKTAMGFEADDESKQDQEEIDVMFRSLCWKLDALSNYQFTPKPMVKELQVKPSVPAIAMEEVVPISVSDANLRAPEEIYDKKRKRGEAVLQSKEEMTQEERNALRLAKKRSRRKEKRQQEADERLVAKLNPGLGNKYEKKKMLESIASAKNITKGKEIEGST-KQFSNSKEFFSRLQEEVQTEIR 304
BLAST of mRNA_Ecto-sp13_S_contig13766.2958.1 vs. uniprot
Match: A0A3M6VNB8_9STRA (U3 small nucleolar ribonucleoprotein protein MPP10 n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VNB8_9STRA) HSP 1 Score: 189 bits (480), Expect = 8.880e-53 Identity = 108/211 (51.18%), Postives = 149/211 (70.62%), Query Frame = 1
Query: 25 RKEAPHLSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKNELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQAQAAQKLVSKLNPGLGNKYEKAKMMRDIQGAKNVTTATGGEESTGREFSTSAKFFSQLQESVTASVKSA 657
+K+ +S +KSKEGLGE+YEKE++K MG DD K + E+ +F LC KLDAL N+H+TPK A+ E++V+ V AIAMEEV+P SV+DA APEE+Y+KKR R L+ EM+Q +RK R++KK RRK +RQ + ++LV+KLNPGLGNKYEK KM+ I GAKN+TT E S+ ++FS S +FFS+LQ+ V +++A
Sbjct: 406 KKKIEEVSMEKSKEGLGEIYEKEYMKTAMGFEADDESKQDQEEIDVMFKSLCWKLDALSNYHFTPKPAVKELQVKPAVPAIAMEEVVPISVSDANLKAPEEVYEKKRKRGEAVLQSKEEMTQNERKALRNAKKHARRKEKRQREFDERLVAKLNPGLGNKYEKKKMLESIAGAKNITTGKQIEGSS-KQFSNSKEFFSRLQDEVQEKIRTA 615
BLAST of mRNA_Ecto-sp13_S_contig13766.2958.1 vs. uniprot
Match: W2QWN2_PHYPN (U3 small nucleolar ribonucleoprotein protein MPP10 n=23 Tax=Phytophthora TaxID=4783 RepID=W2QWN2_PHYPN) HSP 1 Score: 188 bits (477), Expect = 1.780e-52 Identity = 107/205 (52.20%), Postives = 147/205 (71.71%), Query Frame = 1
Query: 43 LSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKNELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQAQAAQKLVSKLNPGLGNKYEKAKMMRDIQGAKNVTTATGGEESTGREFSTSAKFFSQLQESVTASVKSA 657
+S +KSKEGLGE+YEKE++K MG DD K + E++ +F LC KLDAL N+H+TPK A+ E++V+ V AIAMEEV+P SV+DA APEE+Y+KKR R L+ EM+Q +RK R++KK RRK +RQ + ++LV+KLNPGLGNKYEK KM+ I GAKN+TT E S+ ++FS S +FF++LQ+ V ++SA
Sbjct: 392 VSMEKSKEGLGEIYEKEYMKTAMGFEADDESKQDQEEIEVMFKSLCWKLDALSNYHFTPKPAVKELQVKPAVPAIAMEEVVPISVSDANLKAPEEVYEKKRKRGEAVLQSKEEMTQTERKALRNAKKHARRKEKRQREFDERLVAKLNPGLGNKYEKKKMLESIAGAKNITTGKQIEGSS-KQFSNSKEFFTRLQDEVQEKIRSA 595
BLAST of mRNA_Ecto-sp13_S_contig13766.2958.1 vs. uniprot
Match: K3WHQ1_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHQ1_GLOUD) HSP 1 Score: 185 bits (470), Expect = 2.590e-52 Identity = 109/216 (50.46%), Postives = 145/216 (67.13%), Query Frame = 1
Query: 25 RKEAPHLSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKNELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQAQAAQKLVSKLNPGLGNKYEKAKMMRDIQGAKNVTTATGGEESTGREFSTSAKFFSQLQESVTASVKSAGKGME 672
+K+ +S +KSKEGLGE+YEKE++K MG DD K + E+ +F LC KLDAL N+ +TPK + E++V+ V AIAMEEV+P SV+DA APEE+Y+KKR R L+ EMSQE RK R++KK RRK +Q +A ++LV+KLNPGLGNKY K K+M I AKNVTT E ST ++FS S +FF++LQE V ++ K E
Sbjct: 273 KKKLEDVSMEKSKEGLGEIYEKEYMKSAMGFEMDDESKQDQEEIDVMFKSLCWKLDALSNYQFTPKPMVKELQVKPSVPAIAMEEVVPISVSDANLKAPEEIYEKKRKRGEAVLQSKEEMSQEQRKALRNAKKQTRRKENKQKEADERLVAKLNPGLGNKYAKKKLMESISNAKNVTTGKAIEGST-KQFSNSKEFFTRLQEEVKDQIQKKAKTNE 487 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13766.2958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13766.2958.1 >prot_Ecto-sp13_S_contig13766.2958.1 ID=prot_Ecto-sp13_S_contig13766.2958.1|Name=mRNA_Ecto-sp13_S_contig13766.2958.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=240bp RDLQGPTVRKEAPHLSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKNback to top mRNA from alignment at Ecto-sp13_S_contig13766:7..3793+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13766.2958.1 ID=mRNA_Ecto-sp13_S_contig13766.2958.1|Name=mRNA_Ecto-sp13_S_contig13766.2958.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3787bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13766:7..3793+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13766:7..3793+ >mRNA_Ecto-sp13_S_contig13766.2958.1 ID=mRNA_Ecto-sp13_S_contig13766.2958.1|Name=mRNA_Ecto-sp13_S_contig13766.2958.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=720bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13766:7..3793+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |