mRNA_Ecto-sp13_S_contig13766.2958.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13766.2958.1
Unique NamemRNA_Ecto-sp13_S_contig13766.2958.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13766.2958.1 vs. uniprot
Match: D7FTX9_ECTSI (U3 small nucleolar ribonucleoprotein protein MPP10 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTX9_ECTSI)

HSP 1 Score: 432 bits (1110), Expect = 8.520e-147
Identity = 233/239 (97.49%), Postives = 236/239 (98.74%), Query Frame = 1
Query:    1 RDLQGPTVRKEAPHLSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKNELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQAQAAQKLVSKLNPGLGNKYEKAKMMRDIQGAKNVTTATGGEESTGREFSTSAKFFSQLQESVTASVKSAGKGMEGDVKDMNKKAAQLRL 717
            RDLQGPTVRKEAPHLSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKNELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQA+AAQKLVSKLNPGLGNKYEKAKMMRDIQGAKNVTTATGGEESTGREFSTSAKFFSQLQESVTASVKS GKGM+GD KD +KKAAQLRL
Sbjct:  375 RDLQGPTVRKEAPHLSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKNELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQAEAAQKLVSKLNPGLGNKYEKAKMMRDIQGAKNVTTATGGEESTGREFSTSAKFFSQLQESVTASVKSTGKGMDGDAKDTSKKAAQLRL 613          
BLAST of mRNA_Ecto-sp13_S_contig13766.2958.1 vs. uniprot
Match: A0A835YNW6_9STRA (Mpp10 protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNW6_9STRA)

HSP 1 Score: 229 bits (583), Expect = 5.340e-71
Identity = 123/211 (58.29%), Postives = 158/211 (74.88%), Query Frame = 1
Query:   25 RKEAPHLSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKNELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQAQAAQKLVSKLNPGLGNKYEKAKMMRDIQGAKNVTTATGGEESTGREFSTSAKFFSQLQESVTASVKSA 657
            R++AP +S DKS EGL  +YEKE+LK+ +GV EDDP K LK EL+  F++LCGKLDALCNFH+ P+A +PE+ V  DV AIAMEE LP+ V+ A+ LAPEE+Y +KRGR A FLEGGAEM Q++R R+R +KK  R KAR+Q +A QKLVS+ NPGLGN YE+ K++ DI+GA+NV      +  TG++FSTS KFF  LQ+ V   VK A
Sbjct:   87 REDAPEVSMDKSTEGLAAVYEKEYLKQALGVEEDDPSKDLKEELRRDFARLCGKLDALCNFHFRPRAHLPEVAVATDVPAIAMEEALPTGVSTADGLAPEEVYARKRGRRAVFLEGGAEMDQDERNRARLAKKRSRNKARKQTEAEQKLVSRANPGLGNPYEQRKLLADIRGARNVMEGAA-DARTGKDFSTSTKFFGALQKQVAKGVKDA 296          
BLAST of mRNA_Ecto-sp13_S_contig13766.2958.1 vs. uniprot
Match: A0A2P4YHT8_9STRA (U3 small nucleolar ribonucleoprotein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YHT8_9STRA)

HSP 1 Score: 189 bits (481), Expect = 6.600e-57
Identity = 108/207 (52.17%), Postives = 148/207 (71.50%), Query Frame = 1
Query:   43 LSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKNELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQAQAAQKLVSKLNPGLGNKYEKAKMMRDIQGAKNVTTATGGEESTGREFSTSAKFFSQLQESVTASVKSAGK 663
            +S +KSKEGLGE+YEKE++K  MG   DD  K  + E++ +F  LC KLDAL N+H+TPK A+ E++V+  V AIAMEEV+P SV+DA   APEE+Y+KKR R    L+   EM+Q +RK  R++KK  RRK +RQ +  ++LV+KLNPGLGNKYEK KM+  I GAKN+TT    E S+ ++FS S +FFS+LQ+ V   +++A K
Sbjct:   19 VSMEKSKEGLGEIYEKEYMKTAMGFEADDESKQDQEEIEVMFKSLCWKLDALSNYHFTPKPAVKELQVKPAVPAIAMEEVVPISVSDANLKAPEEVYEKKRKRGEAVLQSKEEMTQTERKALRNAKKHARRKEKRQREFDERLVAKLNPGLGNKYEKKKMLESIAGAKNITTGKQIEGSS-KQFSNSKEFFSRLQDEVQEKIRNASK 224          
BLAST of mRNA_Ecto-sp13_S_contig13766.2958.1 vs. uniprot
Match: A0A6V1QZP6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QZP6_HETAK)

HSP 1 Score: 195 bits (495), Expect = 7.180e-56
Identity = 116/243 (47.74%), Postives = 167/243 (68.72%), Query Frame = 1
Query:   25 RKEAPHLSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKNELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQAQAAQKLVSKLNPGLGNKYEKAKMMRDIQGAKNVTTATGGEESTG-----REFSTSAKFFSQLQESVTA-------SVKSAGKGMEGDVKDMNKKAAQLRL 717
            R E P +S +KSK GLGELYEKE+LK+ MGV ++DP K  K E+  +F KLC KLD+L NFH+TPK  IP+++V+ +V AIA+EEVLP++V+ A+ALAPEE++ K +GR+   L+   EM QE+RKR+R+ KKA RRK R++ +A ++LV+KLNPG+GN YEK K++  ++ +KNV      + S+G      +F TSAKFF++LQE  +        S K+ G+ M    +    K+A L+L
Sbjct:  262 RAELPEVSTEKSKAGLGELYEKEYLKQVMGVEDEDPNKAEKEEMAKIFKKLCYKLDSLSNFHFTPKPVIPDLQVKVNVPAIALEEVLPAAVSAADALAPEEVHAKAKGRKG-VLQAREEMEQEERKRARAGKKAARRKDRQRKEADKRLVAKLNPGMGNPYEKEKILESLK-SKNVVEGKNLQSSSGDPDGSSDFKTSAKFFAKLQEQTSKEFANAADSHKNRGESMGNKRRKKGSKSASLKL 502          
BLAST of mRNA_Ecto-sp13_S_contig13766.2958.1 vs. uniprot
Match: G4YNZ1_PHYSP (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=G4YNZ1_PHYSP)

HSP 1 Score: 187 bits (476), Expect = 1.170e-54
Identity = 107/205 (52.20%), Postives = 146/205 (71.22%), Query Frame = 1
Query:   43 LSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKNELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQAQAAQKLVSKLNPGLGNKYEKAKMMRDIQGAKNVTTATGGEESTGREFSTSAKFFSQLQESVTASVKSA 657
            +S +KSKEGLGE+YEKE++K  MG   DD  K  + E++ +F  LC KLDAL N+H+TPK A+ E++V+  V AIAMEEV+P SV+DA   APEE+Y KKR R    L+   EM+Q +RK  R++KK  RRK +RQ +  ++LV+KLNPGLGNKYEK KM+  I GAKN+TT    E S+ ++FS S +FFS+LQ+ V   +++A
Sbjct:  137 VSMEKSKEGLGEIYEKEYMKTAMGFEADDESKQDQEEIEVMFKSLCWKLDALSNYHFTPKPAVKELQVKPAVPAIAMEEVVPISVSDANLKAPEEVYDKKRKRGEAVLQSKEEMTQSERKALRNAKKHARRKEKRQREFDERLVAKLNPGLGNKYEKKKMLESIAGAKNITTGKQIEGSS-KQFSNSKEFFSRLQDEVQEKIRNA 340          
BLAST of mRNA_Ecto-sp13_S_contig13766.2958.1 vs. uniprot
Match: H3GM34_PHYRM (U3 small nucleolar ribonucleoprotein protein MPP10 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GM34_PHYRM)

HSP 1 Score: 190 bits (482), Expect = 3.250e-53
Identity = 109/205 (53.17%), Postives = 146/205 (71.22%), Query Frame = 1
Query:   43 LSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKNELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQAQAAQKLVSKLNPGLGNKYEKAKMMRDIQGAKNVTTATGGEESTGREFSTSAKFFSQLQESVTASVKSA 657
            +S +KSKEGLGE+YEKE++K  MG   DD  K  + E++ +F  LC KLDAL N+H+TPK A+ E+KV+  V AIAMEEV+P SV+DA   APEE+Y+KKR R    L+   EM+Q +RK  R++KK  RRK  RQ +  ++LV+KLNPGLGNKYEK KM+  I GAKN+TT    E S+ ++FS S +FFS+LQ+ V   ++SA
Sbjct:  388 VSMEKSKEGLGEIYEKEYMKTAMGFEADDESKQDQEEIEVMFKSLCWKLDALSNYHFTPKPAVKELKVKPAVPAIAMEEVVPISVSDANLKAPEEVYEKKRKRGEAVLQSKEEMTQTERKALRNAKKHARRKENRQREFDERLVAKLNPGLGNKYEKKKMLESIAGAKNITTGKQIEGSS-KQFSNSKEFFSRLQDEVQEKIRSA 591          
BLAST of mRNA_Ecto-sp13_S_contig13766.2958.1 vs. uniprot
Match: A0A2D4C329_PYTIN (U3 small nucleolar ribonucleoprotein, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C329_PYTIN)

HSP 1 Score: 182 bits (461), Expect = 8.760e-53
Identity = 107/209 (51.20%), Postives = 142/209 (67.94%), Query Frame = 1
Query:   25 RKEAPHLSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKNELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQAQAAQKLVSKLNPGLGNKYEKAKMMRDIQGAKNVTTATGGEESTGREFSTSAKFFSQLQESVTASVK 651
            +K+   +S +KSKEGLGE+YEKE+LK  MG   DD  K  + E+  +F  LC KLDAL N+ +TPK  + E++V+  V AIAMEEV+P SV+DA   APEE+Y KKR R    L+   EM+QE+R   R +KK  RRK +RQ +A ++LV+KLNPGLGNKYEK KM+  I  AKN+T     E ST ++FS S +FFS+LQE V   ++
Sbjct:   97 KKKLVDVSMEKSKEGLGEIYEKEYLKTAMGFEADDESKQDQEEIDVMFRSLCWKLDALSNYQFTPKPMVKELQVKPSVPAIAMEEVVPISVSDANLRAPEEIYDKKRKRGEAVLQSKEEMTQEERNALRLAKKRSRRKEKRQQEADERLVAKLNPGLGNKYEKKKMLESIASAKNITKGKEIEGST-KQFSNSKEFFSRLQEEVQTEIR 304          
BLAST of mRNA_Ecto-sp13_S_contig13766.2958.1 vs. uniprot
Match: A0A3M6VNB8_9STRA (U3 small nucleolar ribonucleoprotein protein MPP10 n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VNB8_9STRA)

HSP 1 Score: 189 bits (480), Expect = 8.880e-53
Identity = 108/211 (51.18%), Postives = 149/211 (70.62%), Query Frame = 1
Query:   25 RKEAPHLSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKNELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQAQAAQKLVSKLNPGLGNKYEKAKMMRDIQGAKNVTTATGGEESTGREFSTSAKFFSQLQESVTASVKSA 657
            +K+   +S +KSKEGLGE+YEKE++K  MG   DD  K  + E+  +F  LC KLDAL N+H+TPK A+ E++V+  V AIAMEEV+P SV+DA   APEE+Y+KKR R    L+   EM+Q +RK  R++KK  RRK +RQ +  ++LV+KLNPGLGNKYEK KM+  I GAKN+TT    E S+ ++FS S +FFS+LQ+ V   +++A
Sbjct:  406 KKKIEEVSMEKSKEGLGEIYEKEYMKTAMGFEADDESKQDQEEIDVMFKSLCWKLDALSNYHFTPKPAVKELQVKPAVPAIAMEEVVPISVSDANLKAPEEVYEKKRKRGEAVLQSKEEMTQNERKALRNAKKHARRKEKRQREFDERLVAKLNPGLGNKYEKKKMLESIAGAKNITTGKQIEGSS-KQFSNSKEFFSRLQDEVQEKIRTA 615          
BLAST of mRNA_Ecto-sp13_S_contig13766.2958.1 vs. uniprot
Match: W2QWN2_PHYPN (U3 small nucleolar ribonucleoprotein protein MPP10 n=23 Tax=Phytophthora TaxID=4783 RepID=W2QWN2_PHYPN)

HSP 1 Score: 188 bits (477), Expect = 1.780e-52
Identity = 107/205 (52.20%), Postives = 147/205 (71.71%), Query Frame = 1
Query:   43 LSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKNELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQAQAAQKLVSKLNPGLGNKYEKAKMMRDIQGAKNVTTATGGEESTGREFSTSAKFFSQLQESVTASVKSA 657
            +S +KSKEGLGE+YEKE++K  MG   DD  K  + E++ +F  LC KLDAL N+H+TPK A+ E++V+  V AIAMEEV+P SV+DA   APEE+Y+KKR R    L+   EM+Q +RK  R++KK  RRK +RQ +  ++LV+KLNPGLGNKYEK KM+  I GAKN+TT    E S+ ++FS S +FF++LQ+ V   ++SA
Sbjct:  392 VSMEKSKEGLGEIYEKEYMKTAMGFEADDESKQDQEEIEVMFKSLCWKLDALSNYHFTPKPAVKELQVKPAVPAIAMEEVVPISVSDANLKAPEEVYEKKRKRGEAVLQSKEEMTQTERKALRNAKKHARRKEKRQREFDERLVAKLNPGLGNKYEKKKMLESIAGAKNITTGKQIEGSS-KQFSNSKEFFTRLQDEVQEKIRSA 595          
BLAST of mRNA_Ecto-sp13_S_contig13766.2958.1 vs. uniprot
Match: K3WHQ1_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHQ1_GLOUD)

HSP 1 Score: 185 bits (470), Expect = 2.590e-52
Identity = 109/216 (50.46%), Postives = 145/216 (67.13%), Query Frame = 1
Query:   25 RKEAPHLSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKNELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQAQAAQKLVSKLNPGLGNKYEKAKMMRDIQGAKNVTTATGGEESTGREFSTSAKFFSQLQESVTASVKSAGKGME 672
            +K+   +S +KSKEGLGE+YEKE++K  MG   DD  K  + E+  +F  LC KLDAL N+ +TPK  + E++V+  V AIAMEEV+P SV+DA   APEE+Y+KKR R    L+   EMSQE RK  R++KK  RRK  +Q +A ++LV+KLNPGLGNKY K K+M  I  AKNVTT    E ST ++FS S +FF++LQE V   ++   K  E
Sbjct:  273 KKKLEDVSMEKSKEGLGEIYEKEYMKSAMGFEMDDESKQDQEEIDVMFKSLCWKLDALSNYQFTPKPMVKELQVKPSVPAIAMEEVVPISVSDANLKAPEEIYEKKRKRGEAVLQSKEEMSQEQRKALRNAKKQTRRKENKQKEADERLVAKLNPGLGNKYAKKKLMESISNAKNVTTGKAIEGST-KQFSNSKEFFTRLQEEVKDQIQKKAKTNE 487          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13766.2958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTX9_ECTSI8.520e-14797.49U3 small nucleolar ribonucleoprotein protein MPP10... [more]
A0A835YNW6_9STRA5.340e-7158.29Mpp10 protein-domain-containing protein n=1 Tax=Tr... [more]
A0A2P4YHT8_9STRA6.600e-5752.17U3 small nucleolar ribonucleoprotein (Fragment) n=... [more]
A0A6V1QZP6_HETAK7.180e-5647.74Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
G4YNZ1_PHYSP1.170e-5452.20Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
H3GM34_PHYRM3.250e-5353.17U3 small nucleolar ribonucleoprotein protein MPP10... [more]
A0A2D4C329_PYTIN8.760e-5351.20U3 small nucleolar ribonucleoprotein, putative n=1... [more]
A0A3M6VNB8_9STRA8.880e-5351.18U3 small nucleolar ribonucleoprotein protein MPP10... [more]
W2QWN2_PHYPN1.780e-5252.20U3 small nucleolar ribonucleoprotein protein MPP10... [more]
K3WHQ1_GLOUD2.590e-5250.46Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13766contigEcto-sp13_S_contig13766:7..3793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score436.0
Seed ortholog evalue1.1e-119
Seed eggNOG ortholog2880.D7FTX9
Preferred nameMPHOSPH10
Model size720
KEGG koko:K14559
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009892,GO:0009987,GO:0010467,GO:0010563,GO:0010921,GO:0010923,GO:0016070,GO:0016072,GO:0019220,GO:0019222,GO:0022613,GO:0030490,GO:0030532,GO:0030684,GO:0030686,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034457,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0035303,GO:0035305,GO:0042254,GO:0042274,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045936,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051174,GO:0051336,GO:0051346,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0120114,GO:1901360,GO:1990904
Exons7
EggNOG free text desc.extracellular matrix structural constituent
EggNOG OGsCOG5384@1,KOG2600@2759
Ec32 ortholog descriptionU3 small nucleolar ribonucleoprotein complex, subunit Mpp10p
Ec32 orthologEc-07_002790.1
Cds size720
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13766.2958.1prot_Ecto-sp13_S_contig13766.2958.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13766 7..3793 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462734.8742766-CDS-Ecto-sp13_S_contig13766:6..991681462734.8742766-CDS-Ecto-sp13_S_contig13766:6..99Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13766 7..99 +
1681462734.8847876-CDS-Ecto-sp13_S_contig13766:703..8531681462734.8847876-CDS-Ecto-sp13_S_contig13766:703..853Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13766 704..853 +
1681462734.8939226-CDS-Ecto-sp13_S_contig13766:1167..12941681462734.8939226-CDS-Ecto-sp13_S_contig13766:1167..1294Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13766 1168..1294 +
1681462734.904736-CDS-Ecto-sp13_S_contig13766:1653..17331681462734.904736-CDS-Ecto-sp13_S_contig13766:1653..1733Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13766 1654..1733 +
1681462734.921805-CDS-Ecto-sp13_S_contig13766:2418..25331681462734.921805-CDS-Ecto-sp13_S_contig13766:2418..2533Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13766 2419..2533 +
1681462734.9371006-CDS-Ecto-sp13_S_contig13766:3122..31901681462734.9371006-CDS-Ecto-sp13_S_contig13766:3122..3190Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13766 3123..3190 +
1681462734.9518938-CDS-Ecto-sp13_S_contig13766:3706..37931681462734.9518938-CDS-Ecto-sp13_S_contig13766:3706..3793Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13766 3707..3793 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13766.2958.1

>prot_Ecto-sp13_S_contig13766.2958.1 ID=prot_Ecto-sp13_S_contig13766.2958.1|Name=mRNA_Ecto-sp13_S_contig13766.2958.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=240bp
RDLQGPTVRKEAPHLSQDKSKEGLGELYEKEFLKKTMGVTEDDPQKGLKN
ELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVA
DAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSSKKAVRRKARRQ
AQAAQKLVSKLNPGLGNKYEKAKMMRDIQGAKNVTTATGGEESTGREFST
SAKFFSQLQESVTASVKSAGKGMEGDVKDMNKKAAQLRL*
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mRNA from alignment at Ecto-sp13_S_contig13766:7..3793+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13766.2958.1 ID=mRNA_Ecto-sp13_S_contig13766.2958.1|Name=mRNA_Ecto-sp13_S_contig13766.2958.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3787bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13766:7..3793+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGACCTCCAAGGACCGACGGTTCGGAAGGAGGCTCCTCACCTATCGCA GGACAAGAGCAAGGAAGGCCTTGGCGAGCTGTACGAGAAAGAGGTATGCA AGAAAAATCGTACGAGGTGCTTACCCTGCAGATGATGCTCGTCCTACGGC AAATAGACGTCGGTATATTCCTCATCAAAGATATCTCGACGTCCCCCCGA ACTGGGCCCAAGTATTGTTGCTTGCTTTCGCACGGTCGTGGATAGCGTTT ACTCGGTGCTGCTCAATGATGCATGGTCCATGTCGGTGGTCGACGCACCG ACCACCTTTACATGCGTTGGAACAGTCGTCTTTCGATTCGACAATGACAT GCGATTGCGTGCAGGGTAGTCGATTCTTGCGCGACGTGGGTTTTAGGTAG TAGGATATTGTGCGGCCTCCTTGATAAGCCTCTCGCGTATCCGGCCTTCG TCACGTCTTGAAAACTACAGTTTTCCCTCTCCCTTCGGAGTGCGAGGGTT TCATGCTGTAGTCGAAGAACCTCAACCTTTGAGTCTAATTTGTCCAGGCG TGCTTGACATGTCGGCGGCATCGAAGCTACCGTGGACCAATGTAACTGAC TCCGTTCACGAGCCCCACGACATGACTGATCTGTGCTTTGGCATATCACA TCCCCACAATCACCCCTCACCAACGTCGGTTGTTGCGGCGCCTGCAGTTC TTGAAGAAAACCATGGGTGTGACAGAGGACGATCCTCAGAAGGGCCTGAA GAACGAGCTGAAGCATCTCTTCTCCAAGCTGTGCGGGAAGCTGGACGCTC TGTGCAACTTCCACTACACACCGAAGGCTGCCATTCCAGAGATGAAGGTA AGTAAGATAGGGCGACAGCCACGGGGAAAAATGTCATCAAGCTATCTGTC TCCCTCTCTACTGCTGCAGGACGTGTGTTTCTTGCGGGGTTTATTCTTTT CCGATAGGCGTGCCGGTTTTGACATTGATGGCACGATGTTTCTTGGTTAC GATGGTTGTTTGTGGTGTTTCTTATCCCGTAAACTGTTGGGGTCTTGGAC GCAACCCGCCCCCTGGGGAATTGCACCAGGTTAGTCTACGCTTATCGCTG CTGCCGCTTCACTCATGTTTCATCACTGTGTGTTCCATGGCGCTCGCCCT TCATCCATCAGGTCCAGGCCGACGTGGCCGCCATTGCCATGGAGGAGGTG TTGCCTTCGTCTGTCGCAGACGCGGAGGCCCTGGCGCCCGAAGAACTTTA CAAGAAAAAGCGGGGCCGAGAAGCAGAGTTCTTGGAAGGTACGCGGGGTG ACGTTTTATGTCGGTTGGTTCTGAGACTTATGGTATAGACTTGTGGCGTC GTCGTGTTTTAAATTACTCCCACGTGTGAGCTCGTGTGACTTTGGGTGTT TCGCCCGAGCGCTGGTTTGGTGCGAAGGGTGCTCGGAAACGTATCGTGGG ACACGATCACAGGGCGACCTTGTGCGGTCCTTGTACCTTGCCCCTTCTGA AGGTTGTCGCCTATCCACAACACCGCCCCTTCCTTATGCTCGAGGGGGTG ATGGTGTGAGCAAGGTCCTTGTCGTCTTGCTTTGTGGCGTGCAACCACTT GCTTTGTCCTCATTCGATCATGAAAACTTGTGTGAATCGTTCCGCAGGTG GGGCAGAGATGAGCCAGGAGGATCGAAAACGGTCACGCTCGTCAAAGAAG GCCGTGAGGCGGAAGGCCAGGCGACAGGTATGCACAATCAACTCTGATAG CATGATTTTGGTCGCGAGTTCATGCCTGTTTTAGTGAAGAGGTTGTTCTT GGCTATTCGACTCTGCTGTTAATCGGATACCGTCCAGTGCTCATTTTTCC TGCAAGACCTCTCTCTTTGAAGCATGACGGTGTTGATGAGGTCATCGTGA TATTTATTCCCTGCAAGGCCTCTCACTTCGAAGCATGAAGGTGTTGATGA GGTCATAGTGACATTTATTCCCTGCGAGGCCTCTTCGAAGAATGACCTCG ACTCAATACCGGTCATGATGTTGCATGTGATGATGCTGCGGTCGTCTAGA TGGTACGTTACCAAATTACCCATCACCAGTGTCATCGTTAAAGACGCAAA TGTAGCCTGCCCCCATGGCATCACCACAATGTACCATGCACCTTGCAGGG GAAGGCCGCAAAGTATATTGGAGGACTGCTGTTCATCTACCGCACGCTTG CCTTCCTTCAGACACATCGGCGGGTGTGTTTCGGTGGATTCCTAAGCTCG TTTTTTTTTTCCTCGTCGCTGTGGCAAAGATGCGGCGGCAGTTTTTCCCG CCGCATGCCGCAATCTGTTGATCAAATCAAGTGGTGCATAAGCTGTAAAT ATATTCTGGCGTCCCGACTTTCTTACCGCGATCCATGCTTGAACGGTGCC GTCCATGGTCAGGCGCAAGCGGCCCAGAAGCTTGTTTCCAAGCTCAATCC GGGTCTCGGGAACAAGTACGAGAAGGCCAAGATGATGAGAGACATCCAGG GTGCCAAGAACGTCACCACCGCCACAGGTGTTCCACTCGCTGCACGCGCA GTACACATACCACTTGTTGATTTATCAACATAACACAACCAGGATCTCTG TTATGCGAGCAATGAACACTTCCTGTCGGGCATGTTTTTTTTCTCGGACT GAACCGGATGGTCAGGCTCGACACCGCCTCATGGGCGTAACGGCACCCGT TTTGATGCTCTGCTGCTTGCCTGCCACGCGGAAGTCGCCGAGCAGCAGTT TCTGTCGGCGGTACATTTGTCAGATCGCTTTCACCTCGTGTGAGGACGGA CTGGCGTGCCGATTGCGTCGCACACATTATTTGATAGTATTATGGAGCAC GTTTTGGTCCCAATGATCTTTGCCTCGTGCAATAAACGCACATCGTGCAC AGCGAGTCAGTCGTGCGCTCTCGTGCACCCCTTGCCACTTCCTGTCCCCA GTTCGGTCGCTGCAGGCAGACCACTACGACCAGTTACGATACTGTTCTAT CCTAGAAGCCTTTAGGCACGCTCATGCATTGATGCAGCGTTTAATGGTGT GCCCAGACTGCGCATTTTCCGATTGGCTGAGGTGTCCCTCGCCTGGTTCT GACGTTCTTTTTACAGGGGGCGAGGAATCAACTGGACGGGAATTCAGCAC TTCCGCGAAGTTCTTCAGTCAGCTTCAGGAATCCGTCAGTACAGACACTA TTCAACGGTCGATTTGAGAATGAGGGCTATAATAAAACTAACTATCGTTC GAGCCAGTGTCGCCACCAAATGTCGAAGGCAGGCGAATTTCTCAAAAGGA AGGCGAAGGCCCTAGAAAGCAAGAAAGCGGAAGGGGGCAAACCTCTTGTG TTGTGCTCCGCCATGCGAAGCGTAGTTGACTGAGGGTCCTCACTGGCGTC GACTGTACACACAACGGGCAGAGCATTGCAGCAGACGTCATTCACCCAAG GCAGGTTGCGGTAGATCGATCGATACACGTGATTATGTGTGGGGAACTTG AGCACTACTAGGTGCTTTCGCTCTCGTGCATGTTTGTCCAAGCTCCCCTC GATGTGTCGAAGAAATCTTTTTGTTCTCGATACTTAAACCCCTACCAAGA GTTTTGGAAGTGCGTTCGTTTGTGCCACCCCCCCCCCCTCTTATGATGGT GGTCCAACTGTTCCCGACTATCGGTGTTTTTTTTTGTGTGTGCCCTGCAG GTGACCGCGAGCGTCAAGTCGGCCGGGAAGGGCATGGAAGGAGATGTCAA GGACATGAACAAGAAAGCAGCTCAACTACGGCTATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13766:7..3793+

>mRNA_Ecto-sp13_S_contig13766.2958.1 ID=mRNA_Ecto-sp13_S_contig13766.2958.1|Name=mRNA_Ecto-sp13_S_contig13766.2958.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=720bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13766:7..3793+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGACCTCCAAGGACCGACGGTTCGGAAGGAGGCTCCTCACCTATCGCA
GGACAAGAGCAAGGAAGGCCTTGGCGAGCTGTACGAGAAAGAGTTCTTGA
AGAAAACCATGGGTGTGACAGAGGACGATCCTCAGAAGGGCCTGAAGAAC
GAGCTGAAGCATCTCTTCTCCAAGCTGTGCGGGAAGCTGGACGCTCTGTG
CAACTTCCACTACACACCGAAGGCTGCCATTCCAGAGATGAAGGTCCAGG
CCGACGTGGCCGCCATTGCCATGGAGGAGGTGTTGCCTTCGTCTGTCGCA
GACGCGGAGGCCCTGGCGCCCGAAGAACTTTACAAGAAAAAGCGGGGCCG
AGAAGCAGAGTTCTTGGAAGGTGGGGCAGAGATGAGCCAGGAGGATCGAA
AACGGTCACGCTCGTCAAAGAAGGCCGTGAGGCGGAAGGCCAGGCGACAG
GCGCAAGCGGCCCAGAAGCTTGTTTCCAAGCTCAATCCGGGTCTCGGGAA
CAAGTACGAGAAGGCCAAGATGATGAGAGACATCCAGGGTGCCAAGAACG
TCACCACCGCCACAGGGGGCGAGGAATCAACTGGACGGGAATTCAGCACT
TCCGCGAAGTTCTTCAGTCAGCTTCAGGAATCCGTGACCGCGAGCGTCAA
GTCGGCCGGGAAGGGCATGGAAGGAGATGTCAAGGACATGAACAAGAAAG
CAGCTCAACTACGGCTATGA
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