mRNA_Ecto-sp13_S_contig13764.2957.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13764.2957.1
Unique NamemRNA_Ecto-sp13_S_contig13764.2957.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13764.2957.1 vs. uniprot
Match: A0A6H5KX93_9PHAE (C2H2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KX93_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 2.810e-35
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 1 
Query:   37 STGCRPDKTGKKDHPFVCTQCPMSFPMATQLSDHLERAHGIFKHPSLITPNKTLSAGLAAET 222
            STGCRPDKTGKKDHPFVCTQCPMSFPMAT LSDHLERAHGIFKHPSLITPNKTLSAGLAAET
Sbjct:  340 STGCRPDKTGKKDHPFVCTQCPMSFPMATLLSDHLERAHGIFKHPSLITPNKTLSAGLAAET 401
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13764.2957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KX93_9PHAE2.810e-3598.39C2H2-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13764contigEcto-sp13_S_contig13764:4298..4522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size225
Hectar predicted targeting categoryother localisation
Exons1
Cds size225
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462734.84353-CDS-Ecto-sp13_S_contig13764:4297..45221681462734.84353-CDS-Ecto-sp13_S_contig13764:4297..4522Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13764 4298..4522 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13764.2957.1prot_Ecto-sp13_S_contig13764.2957.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13764 4298..4522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13764.2957.1

>prot_Ecto-sp13_S_contig13764.2957.1 ID=prot_Ecto-sp13_S_contig13764.2957.1|Name=mRNA_Ecto-sp13_S_contig13764.2957.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=75bp
SRRSISLFSPSNSTGCRPDKTGKKDHPFVCTQCPMSFPMATQLSDHLERA
HGIFKHPSLITPNKTLSAGLAAET*
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mRNA from alignment at Ecto-sp13_S_contig13764:4298..4522-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13764.2957.1 ID=mRNA_Ecto-sp13_S_contig13764.2957.1|Name=mRNA_Ecto-sp13_S_contig13764.2957.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13764:4298..4522- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCCGGCGCTCGATTTCCCTGTTTTCTCCCTCCAACAGCACCGGCTGCCG
GCCGGACAAGACTGGCAAGAAAGACCACCCGTTCGTTTGCACCCAGTGCC
CGATGAGCTTCCCCATGGCCACGCAGCTCAGCGACCACTTGGAGCGAGCC
CACGGCATCTTCAAGCACCCGTCGCTCATCACCCCGAACAAGACCCTGTC
CGCGGGGCTCGCGGCAGAGACGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13764:4298..4522-

>mRNA_Ecto-sp13_S_contig13764.2957.1 ID=mRNA_Ecto-sp13_S_contig13764.2957.1|Name=mRNA_Ecto-sp13_S_contig13764.2957.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13764:4298..4522- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCCGGCGCTCGATTTCCCTGTTTTCTCCCTCCAACAGCACCGGCTGCCG
GCCGGACAAGACTGGCAAGAAAGACCACCCGTTCGTTTGCACCCAGTGCC
CGATGAGCTTCCCCATGGCCACGCAGCTCAGCGACCACTTGGAGCGAGCC
CACGGCATCTTCAAGCACCCGTCGCTCATCACCCCGAACAAGACCCTGTC
CGCGGGGCTCGCGGCAGAGACGTGA
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