prot_Ecto-sp13_S_contig13764.2957.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13764.2957.1
Unique Nameprot_Ecto-sp13_S_contig13764.2957.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length75
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13764.2957.1 vs. uniprot
Match: A0A6H5KX93_9PHAE (C2H2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KX93_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 2.810e-35
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 0 
Query:   13 STGCRPDKTGKKDHPFVCTQCPMSFPMATQLSDHLERAHGIFKHPSLITPNKTLSAGLAAET 74
            STGCRPDKTGKKDHPFVCTQCPMSFPMAT LSDHLERAHGIFKHPSLITPNKTLSAGLAAET
Sbjct:  340 STGCRPDKTGKKDHPFVCTQCPMSFPMATLLSDHLERAHGIFKHPSLITPNKTLSAGLAAET 401
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13764.2957.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KX93_9PHAE2.810e-3598.39C2H2-type domain-containing protein n=2 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 30..51
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 28..51
score: 9.182

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13764contigEcto-sp13_S_contig13764:4298..4522 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13764.2957.1mRNA_Ecto-sp13_S_contig13764.2957.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13764 4298..4522 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13764.2957.1 ID=prot_Ecto-sp13_S_contig13764.2957.1|Name=mRNA_Ecto-sp13_S_contig13764.2957.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=75bp
SRRSISLFSPSNSTGCRPDKTGKKDHPFVCTQCPMSFPMATQLSDHLERA
HGIFKHPSLITPNKTLSAGLAAET*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type