mRNA_Ecto-sp13_S_contig13756.2952.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13756.2952.1 vs. uniprot
Match: A0A6H5KLG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLG2_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 1.400e-8 Identity = 61/155 (39.35%), Postives = 75/155 (48.39%), Query Frame = 2
Query: 2 SAASKASCLARAPVEERGKPASSLSCNDAPGSDLETTGPAVRAG*DARDTR*RG--EEGKGCESEAAATGTGAAASSIFSSSRGVAC------ALVAASPAGVPVPTVASEKIEGLPRPGTNSVRGD*DEASGG-LKAGGGASDCTSALISAFTT 439
SAA +ASCLA APVE++GKPASS DA T P +G D R RG + KGC + A A A +S + +A ++AA A PT A EK+E G V G+ D A GG L A GG CT A +A TT
Sbjct: 12 SAACRASCLALAPVEDKGKPASSCGTGDAACLGGSTMWPVADSGSITTDARWRGGGDTTKGCCNRAGAVDADCATASSTGTVVDLAADDDDPGVVLAAVSARTSRPTGAPEKLEAWSCIGVGRVGGEEDGAGGGALGAWGGTGGCTFASAAASTT 166
BLAST of mRNA_Ecto-sp13_S_contig13756.2952.1 vs. uniprot
Match: A0A6H5L4L9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L9_9PHAE) HSP 1 Score: 58.9 bits (141), Expect = 3.670e-7 Identity = 70/175 (40.00%), Postives = 86/175 (49.14%), Query Frame = -1
Query: 1 EMLLEQVLSLLRSQTPGHVVNAEINADVQSLAPPPAFRPPLASSQSPR---TELVPGRGNPSIFSDATVGTGTPAGLAATKAQATPRLEEK-----MEEAAAP-VPVAAASLSQPLPSSP--LQRVSLASQPALTAGPVVSRSEPGASLQDRDDAGLPLSSTGARARQDALDAAD 492
EMLLEQVL+LLR+ VV+A +A+ Q P P+ P + T L P + + S S A VG A AA + + A AP A A L QPL SP LQR S+ P G +V AS +DDAGLPL+ST ARARQ+ALDAAD
Sbjct: 51 EMLLEQVLTLLRAI---QVVDAAAHANAQP--PVPSHAPSVXXXXXXXXXPTHLTPLQDHASSLSGAPVGREVRAETAARATSGSXXXXXXXXTVPVGPAVAPSASTAPALLQQPLVVSPHSLQRASVLIDPNSATGHIVEPPGQAASPLPQDDAGLPLTSTRARARQEALDAAD 220
BLAST of mRNA_Ecto-sp13_S_contig13756.2952.1 vs. uniprot
Match: A0A6H5K8W4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W4_9PHAE) HSP 1 Score: 53.9 bits (128), Expect = 2.320e-5 Identity = 45/97 (46.39%), Postives = 55/97 (56.70%), Query Frame = -1
Query: 1 TPAGLAATKAQATPRLEEKMEEAAAPVPVAAASLSQPLPSSP--LQRVSLASQPALTAGPVVSRSEPGASLQDRDDAGLPLSSTGARARQDALDAAD 285
TPA ++ AT +E + +A+ P A L QPL SP LQR S+ P G +V AS +DDAGLPLSSTGARARQ+AL AAD
Sbjct: 26 TPASSSSATRSATVPVEPAVAPSASTAP---ALLQQPLVVSPPPLQRASVLIDPDSATGHIVEPPSQAASPVPQDDAGLPLSSTGARARQEALKAAD 119
BLAST of mRNA_Ecto-sp13_S_contig13756.2952.1 vs. uniprot
Match: A0A6H5L6I4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6I4_9PHAE) HSP 1 Score: 53.1 bits (126), Expect = 4.000e-5 Identity = 45/97 (46.39%), Postives = 55/97 (56.70%), Query Frame = -1
Query: 1 TPAGLAATKAQATPRLEEKMEEAAAPVPVAAASLSQPLPSSP--LQRVSLASQPALTAGPVVSRSEPGASLQDRDDAGLPLSSTGARARQDALDAAD 285
TPA ++ AT +E + ++A+ P A L QPL SP LQR S+ P G +V AS +DDAGLPLSSTGARARQ AL AAD
Sbjct: 298 TPASSSSATRSATVPVEPAVAQSASTAP---ALLQQPLVVSPPPLQRASVLIDPDSATGHIVEPPSQAASPVPQDDAGLPLSSTGARARQIALHAAD 391
BLAST of mRNA_Ecto-sp13_S_contig13756.2952.1 vs. uniprot
Match: A0A6H5KHE6_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE6_9PHAE) HSP 1 Score: 53.1 bits (126), Expect = 4.390e-5 Identity = 43/98 (43.88%), Postives = 55/98 (56.12%), Query Frame = -1
Query: 1 TPAGLAATKAQATPRLEEKMEEAAAPVPVAAASLSQP---LPSSPLQRVSLASQPALTAGPVVSRSEPGASLQDRDDAGLPLSSTGARARQDALDAAD 285
TPA ++ AT +E + ++A+ P L QP + PLQR S+ S P G +V AS +DDAGLPLSSTGARARQ+AL AAD
Sbjct: 668 TPASSSSATRSATVPVEPAVAQSASTAPA----LFQPSLVVSPLPLQRASVLSDPDSATGHIVEPPSQAASPVPQDDAGLPLSSTGARARQEALHAAD 761
BLAST of mRNA_Ecto-sp13_S_contig13756.2952.1 vs. uniprot
Match: A0A6H5JEY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY5_9PHAE) HSP 1 Score: 52.0 bits (123), Expect = 7.060e-5 Identity = 43/97 (44.33%), Postives = 55/97 (56.70%), Query Frame = -1
Query: 1 TPAGLAATKAQATPRLEEKMEEAAAPVPVAAASLSQPLPSSP--LQRVSLASQPALTAGPVVSRSEPGASLQDRDDAGLPLSSTGARARQDALDAAD 285
TP ++ AT +E + ++A+ P A L QPL SP LQR S+ P + G +V AS +DDAG PLSSTGARARQ+AL AAD
Sbjct: 26 TPGSSSSATRSATEPVEPAVAQSASTAP---ALLQQPLVVSPPTLQRASVLIDPDSSTGHIVEPPSQAASPVPQDDAGWPLSSTGARARQEALHAAD 119 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13756.2952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13756.2952.1 >prot_Ecto-sp13_S_contig13756.2952.1 ID=prot_Ecto-sp13_S_contig13756.2952.1|Name=mRNA_Ecto-sp13_S_contig13756.2952.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=122bp VRSIQSVLSRSCSRGRERQASVVPVLQRCSWFRPRDNGASCKGGLRRKGHback to top mRNA from alignment at Ecto-sp13_S_contig13756:386..877+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13756.2952.1 ID=mRNA_Ecto-sp13_S_contig13756.2952.1|Name=mRNA_Ecto-sp13_S_contig13756.2952.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=492bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13756:386..877+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13756:386..877+ >mRNA_Ecto-sp13_S_contig13756.2952.1 ID=mRNA_Ecto-sp13_S_contig13756.2952.1|Name=mRNA_Ecto-sp13_S_contig13756.2952.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13756:386..877+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |