mRNA_Ecto-sp13_S_contig13756.2952.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13756.2952.1
Unique NamemRNA_Ecto-sp13_S_contig13756.2952.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13756.2952.1 vs. uniprot
Match: A0A6H5KLG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLG2_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.400e-8
Identity = 61/155 (39.35%), Postives = 75/155 (48.39%), Query Frame = 2
Query:    2 SAASKASCLARAPVEERGKPASSLSCNDAPGSDLETTGPAVRAG*DARDTR*RG--EEGKGCESEAAATGTGAAASSIFSSSRGVAC------ALVAASPAGVPVPTVASEKIEGLPRPGTNSVRGD*DEASGG-LKAGGGASDCTSALISAFTT 439
            SAA +ASCLA APVE++GKPASS    DA      T  P   +G    D R RG  +  KGC + A A     A +S   +   +A        ++AA  A    PT A EK+E     G   V G+ D A GG L A GG   CT A  +A TT
Sbjct:   12 SAACRASCLALAPVEDKGKPASSCGTGDAACLGGSTMWPVADSGSITTDARWRGGGDTTKGCCNRAGAVDADCATASSTGTVVDLAADDDDPGVVLAAVSARTSRPTGAPEKLEAWSCIGVGRVGGEEDGAGGGALGAWGGTGGCTFASAAASTT 166          
BLAST of mRNA_Ecto-sp13_S_contig13756.2952.1 vs. uniprot
Match: A0A6H5L4L9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L9_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 3.670e-7
Identity = 70/175 (40.00%), Postives = 86/175 (49.14%), Query Frame = -1
Query:    1 EMLLEQVLSLLRSQTPGHVVNAEINADVQSLAPPPAFRPPLASSQSPR---TELVPGRGNPSIFSDATVGTGTPAGLAATKAQATPRLEEK-----MEEAAAP-VPVAAASLSQPLPSSP--LQRVSLASQPALTAGPVVSRSEPGASLQDRDDAGLPLSSTGARARQDALDAAD 492
            EMLLEQVL+LLR+     VV+A  +A+ Q   P P+  P +          T L P + + S  S A VG    A  AA     +           +  A AP    A A L QPL  SP  LQR S+   P    G +V      AS   +DDAGLPL+ST ARARQ+ALDAAD
Sbjct:   51 EMLLEQVLTLLRAI---QVVDAAAHANAQP--PVPSHAPSVXXXXXXXXXPTHLTPLQDHASSLSGAPVGREVRAETAARATSGSXXXXXXXXTVPVGPAVAPSASTAPALLQQPLVVSPHSLQRASVLIDPNSATGHIVEPPGQAASPLPQDDAGLPLTSTRARARQEALDAAD 220          
BLAST of mRNA_Ecto-sp13_S_contig13756.2952.1 vs. uniprot
Match: A0A6H5K8W4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W4_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 2.320e-5
Identity = 45/97 (46.39%), Postives = 55/97 (56.70%), Query Frame = -1
Query:    1 TPAGLAATKAQATPRLEEKMEEAAAPVPVAAASLSQPLPSSP--LQRVSLASQPALTAGPVVSRSEPGASLQDRDDAGLPLSSTGARARQDALDAAD 285
            TPA  ++    AT  +E  +  +A+  P   A L QPL  SP  LQR S+   P    G +V      AS   +DDAGLPLSSTGARARQ+AL AAD
Sbjct:   26 TPASSSSATRSATVPVEPAVAPSASTAP---ALLQQPLVVSPPPLQRASVLIDPDSATGHIVEPPSQAASPVPQDDAGLPLSSTGARARQEALKAAD 119          
BLAST of mRNA_Ecto-sp13_S_contig13756.2952.1 vs. uniprot
Match: A0A6H5L6I4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6I4_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 4.000e-5
Identity = 45/97 (46.39%), Postives = 55/97 (56.70%), Query Frame = -1
Query:    1 TPAGLAATKAQATPRLEEKMEEAAAPVPVAAASLSQPLPSSP--LQRVSLASQPALTAGPVVSRSEPGASLQDRDDAGLPLSSTGARARQDALDAAD 285
            TPA  ++    AT  +E  + ++A+  P   A L QPL  SP  LQR S+   P    G +V      AS   +DDAGLPLSSTGARARQ AL AAD
Sbjct:  298 TPASSSSATRSATVPVEPAVAQSASTAP---ALLQQPLVVSPPPLQRASVLIDPDSATGHIVEPPSQAASPVPQDDAGLPLSSTGARARQIALHAAD 391          
BLAST of mRNA_Ecto-sp13_S_contig13756.2952.1 vs. uniprot
Match: A0A6H5KHE6_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE6_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 4.390e-5
Identity = 43/98 (43.88%), Postives = 55/98 (56.12%), Query Frame = -1
Query:    1 TPAGLAATKAQATPRLEEKMEEAAAPVPVAAASLSQP---LPSSPLQRVSLASQPALTAGPVVSRSEPGASLQDRDDAGLPLSSTGARARQDALDAAD 285
            TPA  ++    AT  +E  + ++A+  P     L QP   +   PLQR S+ S P    G +V      AS   +DDAGLPLSSTGARARQ+AL AAD
Sbjct:  668 TPASSSSATRSATVPVEPAVAQSASTAPA----LFQPSLVVSPLPLQRASVLSDPDSATGHIVEPPSQAASPVPQDDAGLPLSSTGARARQEALHAAD 761          
BLAST of mRNA_Ecto-sp13_S_contig13756.2952.1 vs. uniprot
Match: A0A6H5JEY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY5_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 7.060e-5
Identity = 43/97 (44.33%), Postives = 55/97 (56.70%), Query Frame = -1
Query:    1 TPAGLAATKAQATPRLEEKMEEAAAPVPVAAASLSQPLPSSP--LQRVSLASQPALTAGPVVSRSEPGASLQDRDDAGLPLSSTGARARQDALDAAD 285
            TP   ++    AT  +E  + ++A+  P   A L QPL  SP  LQR S+   P  + G +V      AS   +DDAG PLSSTGARARQ+AL AAD
Sbjct:   26 TPGSSSSATRSATEPVEPAVAQSASTAP---ALLQQPLVVSPPTLQRASVLIDPDSSTGHIVEPPSQAASPVPQDDAGWPLSSTGARARQEALHAAD 119          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13756.2952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KLG2_9PHAE1.400e-839.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4L9_9PHAE3.670e-740.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8W4_9PHAE2.320e-546.39Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L6I4_9PHAE4.000e-546.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHE6_9PHAE4.390e-543.88Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JEY5_9PHAE7.060e-544.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13756contigEcto-sp13_S_contig13756:386..877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size493
Hectar predicted targeting categoryother localisation
Exons1
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462734.279362-CDS-Ecto-sp13_S_contig13756:385..7511681462734.279362-CDS-Ecto-sp13_S_contig13756:385..751Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13756 386..751 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462734.2882376-UTR-Ecto-sp13_S_contig13756:751..8771681462734.2882376-UTR-Ecto-sp13_S_contig13756:751..877Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13756 752..877 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13756.2952.1prot_Ecto-sp13_S_contig13756.2952.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13756 386..751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13756.2952.1

>prot_Ecto-sp13_S_contig13756.2952.1 ID=prot_Ecto-sp13_S_contig13756.2952.1|Name=mRNA_Ecto-sp13_S_contig13756.2952.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=122bp
VRSIQSVLSRSCSRGRERQASVVPVLQRCSWFRPRDNGASCKGGLRRKGH
TLKGGGGQRLRERGRCDWNRGGGLLHLFLQPRCRLCLGCRESCRCPCAYG
GVRKNRRIAPPRDQLRSWRLR*
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mRNA from alignment at Ecto-sp13_S_contig13756:386..877+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13756.2952.1 ID=mRNA_Ecto-sp13_S_contig13756.2952.1|Name=mRNA_Ecto-sp13_S_contig13756.2952.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=492bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13756:386..877+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCGCAGCATCCAAAGCGTCTTGTCTCGCTCGTGCTCCCGTGGAAGAGA GAGGCAAGCCAGCGTCGTCCCTGTCCTGCAACGATGCTCCTGGTTCCGAC CTCGAGACAACGGGGCCAGCTGTAAGGGCGGGTTGAGACGCAAGGGACAC ACGCTGAAGGGGGGAGGAGGGCAAAGGTTGCGAGAGCGAGGCCGCTGCGA CTGGAACCGGGGCGGCGGCCTCCTCCATCTTTTCCTCCAGCCGCGGTGTC GCCTGTGCCTTGGTTGCCGCGAGTCCTGCAGGTGTCCCTGTGCCTACGGT GGCGTCAGAAAAAATAGAAGGATTGCCCCGCCCCGGGACCAACTCCGTTC GTGGCGATTGAGATGAGGCAAGCGGCGGTCTAAAGGCGGGTGGAGGCGCA AGCGATTGCACATCGGCGTTGATTTCGGCATTCACAACGTGGCCCGGCGT TTGGGATCTAAGGAGCGAAAGCACTTGTTCCAACAGCATTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13756:386..877+

>mRNA_Ecto-sp13_S_contig13756.2952.1 ID=mRNA_Ecto-sp13_S_contig13756.2952.1|Name=mRNA_Ecto-sp13_S_contig13756.2952.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13756:386..877+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCGCAGCATCCAAAGCGTCTTGTCTCGCTCGTGCTCCCGTGGAAGAGA
GAGGCAAGCCAGCGTCGTCCCTGTCCTGCAACGATGCTCCTGGTTCCGAC
CTCGAGACAACGGGGCCAGCTGTAAGGGCGGGTTGAGACGCAAGGGACAC
ACGCTGAAGGGGGGAGGAGGGCAAAGGTTGCGAGAGCGAGGCCGCTGCGA
CTGGAACCGGGGCGGCGGCCTCCTCCATCTTTTCCTCCAGCCGCGGTGTC
GCCTGTGCCTTGGTTGCCGCGAGTCCTGCAGGTGTCCCTGTGCCTACGGT
GGCGTCAGAAAAAATAGAAGGATTGCCCCGCCCCGGGACCAACTCCGTTC
GTGGCGATTGAGATGA
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