mRNA_Ecto-sp13_S_contig13714.2922.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13714.2922.1
Unique NamemRNA_Ecto-sp13_S_contig13714.2922.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13714.2922.1 vs. uniprot
Match: A0A6H5K928_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K928_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 5.710e-58
Identity = 108/125 (86.40%), Postives = 116/125 (92.80%), Query Frame = 1 
Query:  490 GGLGRTSPRSSSYGYFDGEEPSWEEYDRHVARQPGELENQPSAKGGGEKDTPLEATPSSRGAHPQQWDVWAEYLAYEAATKRLLRELRYFLGSVDALAPTAPNMAFALESLGAEGTGTGSNGGVA 864
            GGL RTSPRSSSYGYF+GEEPSWEEYDRHV RQPG++E++PSAKGGGE+DTPLEATPSS GAHPQQWDVWAE LAYEAATKRLLRELR+ LG +DALAPTAPNMA ALESLGAEGTG GSNGG A
Sbjct: 2790 GGLARTSPRSSSYGYFEGEEPSWEEYDRHVGRQPGDVESEPSAKGGGEQDTPLEATPSSWGAHPQQWDVWAEDLAYEAATKRLLRELRHLLGGLDALAPTAPNMAVALESLGAEGTGAGSNGGAA 2914
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BLAST of mRNA_Ecto-sp13_S_contig13714.2922.1 vs. uniprot
Match: D7G824_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G824_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 9.350e-54
Identity = 113/164 (68.90%), Postives = 121/164 (73.78%), Query Frame = 1 
Query:  376 PPPTTASPXXXRDRXXXXXXXXXXXXXXXXXXXXXXXXGGLGRTSPRSSSYGYFDGEEPSWEEYDRHVARQPGELENQPSAKGGGEKDT-PLEATPSSRGAHPQQWDVWAEYLAYEAATKRLLRELRYFLGSVDALAPTAPNMAFALESLGAEGTGTGSNGGVA 864
            PPP TASP    DR                        GGLGRTSPRSSSYGYF+GEEPSWEEYDRHVA QPG++E+ PSAKGGGE+DT PLE TPSS    PQQWDVWAE LAYEAATKRLLRELR+ LG +DALAPTAPNMAFALESLGAEGTG GS+G  A
Sbjct: 2716 PPPITASPPGGHDRTPGGGGSQAGVGNPAAAGEGGVA-GGLGRTSPRSSSYGYFEGEEPSWEEYDRHVAWQPGDVESGPSAKGGGEQDTSPLEPTPSSSATFPQQWDVWAEDLAYEAATKRLLRELRHLLGGLDALAPTAPNMAFALESLGAEGTGAGSSGDAA 2878
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13714.2922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K928_9PHAE5.710e-5886.40PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G824_ECTSI9.350e-5468.90PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13714contigEcto-sp13_S_contig13714:2..1727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score226.1
Seed ortholog evalue1.7e-56
Seed eggNOG ortholog2880.D7G824
Model size1373
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.vacuolar proton-transporting V-type ATPase complex assembly
EggNOG OGsKOG1064@1,KOG1064@2759
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_009660.1
Cds size681
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462732.1423767-UTR-Ecto-sp13_S_contig13714:1..2761681462732.1423767-UTR-Ecto-sp13_S_contig13714:1..276Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13714 2..276 -
1681462732.169667-UTR-Ecto-sp13_S_contig13714:1310..17271681462732.169667-UTR-Ecto-sp13_S_contig13714:1310..1727Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13714 1311..1727 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462732.1514466-CDS-Ecto-sp13_S_contig13714:276..7331681462732.1514466-CDS-Ecto-sp13_S_contig13714:276..733Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13714 277..733 -
1681462732.1593125-CDS-Ecto-sp13_S_contig13714:1086..13101681462732.1593125-CDS-Ecto-sp13_S_contig13714:1086..1310Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13714 1087..1310 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13714.2922.1prot_Ecto-sp13_S_contig13714.2922.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13714 277..1310 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13714.2922.1

>prot_Ecto-sp13_S_contig13714.2922.1 ID=prot_Ecto-sp13_S_contig13714.2922.1|Name=mRNA_Ecto-sp13_S_contig13714.2922.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=227bp
MPGGGGSQAGVGSPAAGGEGGGAAGGLGRTSPRSSSYGYFDGEEPSWEEY
DRHVARQPGELENQPSAKGGGEKDTPLEATPSSRGAHPQQWDVWAEYLAY
EAATKRLLRELRYFLGSVDALAPTAPNMAFALESLGAEGTGTGSNGGVAR
ERPRGGGEPVQGARSLDGGVCGGGSGRAQPRVGGGIEAPLRAVPAARRAI
FVLFLVVVAQGRGGGRGRRLFLHRLS*
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mRNA from alignment at Ecto-sp13_S_contig13714:2..1727-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13714.2922.1 ID=mRNA_Ecto-sp13_S_contig13714.2922.1|Name=mRNA_Ecto-sp13_S_contig13714.2922.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1726bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13714:2..1727- (Ectocarpus species13 EcNAP12_S_4_19m)
TCAAAGCCAAGGTAGGCGCTCCCGCAGCGGAGGCGGATTCCGGTGAGCTA
TCAGGGGACATGTTTGGTGGATTCGGTGCTCCGCCCGACGCAAGGCTTCT
CCCTCAACCGCCGCTGCCGCTACTGTAGCGTCTGGCGAGCTGTCTGGTGA
CATGTTCGGTGGCTTTGATGCCGCACCGCCCCGACGGAGGCCCACTGCTT
CGACCACCGCTGTTGCTACGGTAGCGTCTGGCGAGCTCTCTTGTGACATG
TTCGGCGACTTCGACGGTCCACAGAGAGGCCCCGCAGCCACCACTCCCCC
CAAACCTCGGCTGTCGAGCCCAACGGCCGTCGCCACGGGCGAGCTGTTGA
GTGACCATTTCGCTGCCTTCGATACCCCCCCCCTACAACGGCGTCGCCCC
CTGGAGGTCGCGACCGGATGCCGGGCGGCGGCGGCTCGCAGGCGGGCGTG
GGCAGCCCGGCAGCAGGAGGAGAAGGAGGAGGAGCTGCCGGGGGACTTGG
GCGGACGTCTCCGCGGTCCAGCAGCTACGGGTACTTCGATGGGGAAGAAC
CGAGCTGGGAAGAGTACGACAGGCACGTAGCACGGCAGCCTGGCGAGTTG
GAAAACCAACCGAGTGCGAAAGGAGGAGGGGAGAAAGACACGTGAGTTTG
CGAGGGATTGATTTTTTCACGGTTAGCGAAGAGTGATGCGTGTTGAGGGG
GGCGAGGTGCAGCGGTACGGGTCCGTGTTCGCCGGCAGCAAGTACTCGTA
GGTCGACCTCTTGTTTGCTGCTTACTGTCACAGGGATGTATTTTTTTGTT
TGTTTTTTCTTCGTTTCTTGCAGATGCAAGAGACAGATTCACCTGCACCT
TCCACAAACGCATGTGTGGTTAAGTGTTTGGGAAACTCACCAGCCACCCG
CCTTGGAAAACTGTTTCTGTCGCCCATAGTTCCCTCTCTGTCCGTTTTAT
TGCCTGTTTGCCCGCCCCCCTGACCCCCTTTCCATCACCACCAGCCCCCT
CGAAGCTACTCCCAGCTCCAGGGGTGCACACCCTCAACAATGGGACGTCT
GGGCAGAATATCTCGCCTACGAGGCGGCGACCAAGCGGCTTCTCCGAGAG
CTCCGATACTTCTTGGGAAGCGTCGATGCGCTTGCCCCTACTGCGCCCAA
CATGGCGTTCGCCCTAGAGTCTCTGGGGGCAGAGGGGACCGGGACCGGCT
CGAACGGCGGCGTTGCGAGAGAACGTCCGCGCGGTGGGGGAGAGCCTGTG
CAAGGCGCACGGTCTCTCGACGGGGGCGTTTGCGGCGGCGGCAGCGGGCG
CGCTCAGCCACGCGTCGGCGGGGGGATCGAGGCGCCTCTGCGCGCTGTGC
CTGCTGCTCGGCGCGCTATATTTGTTCTATTTCTTGTTGTTGTCGCGCAA
GGAAGAGGGGGAGGCCGCGGGCGACGACTGTTTTTACACCGCTTGAGTTG
AGTAGGTGATTCCGCGTGGAGTGGTCTATGTCCCGACACTGATATACTGC
TGTAAATACGAGTGCATGTGCGTTTCGCGTGCATGTGCGTTTTCGTATGA
GCGAGAGTGTGCGACTTGTTTGGGTGTTGCTCAATCGCTCCGAACCTCTC
CTCTCCCAAGGGTGGCACAGCATCACTGCGGGGTCATTGAGGGCACCGGG
AGCAATTTGTTCATGTTCTGCACTTTGTCGCAGCGAGATATTTTCGTTTA
CATTGATTGGCACCTGTTTAGACTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13714:2..1727-

>mRNA_Ecto-sp13_S_contig13714.2922.1 ID=mRNA_Ecto-sp13_S_contig13714.2922.1|Name=mRNA_Ecto-sp13_S_contig13714.2922.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=681bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13714:2..1727- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGGCGGCGGCGGCTCGCAGGCGGGCGTGGGCAGCCCGGCAGCAGG
AGGAGAAGGAGGAGGAGCTGCCGGGGGACTTGGGCGGACGTCTCCGCGGT
CCAGCAGCTACGGGTACTTCGATGGGGAAGAACCGAGCTGGGAAGAGTAC
GACAGGCACGTAGCACGGCAGCCTGGCGAGTTGGAAAACCAACCGAGTGC
GAAAGGAGGAGGGGAGAAAGACACCCCCCTCGAAGCTACTCCCAGCTCCA
GGGGTGCACACCCTCAACAATGGGACGTCTGGGCAGAATATCTCGCCTAC
GAGGCGGCGACCAAGCGGCTTCTCCGAGAGCTCCGATACTTCTTGGGAAG
CGTCGATGCGCTTGCCCCTACTGCGCCCAACATGGCGTTCGCCCTAGAGT
CTCTGGGGGCAGAGGGGACCGGGACCGGCTCGAACGGCGGCGTTGCGAGA
GAACGTCCGCGCGGTGGGGGAGAGCCTGTGCAAGGCGCACGGTCTCTCGA
CGGGGGCGTTTGCGGCGGCGGCAGCGGGCGCGCTCAGCCACGCGTCGGCG
GGGGGATCGAGGCGCCTCTGCGCGCTGTGCCTGCTGCTCGGCGCGCTATA
TTTGTTCTATTTCTTGTTGTTGTCGCGCAAGGAAGAGGGGGAGGCCGCGG
GCGACGACTGTTTTTACACCGCTTGAGTTGA
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