mRNA_Ecto-sp13_S_contig13700.2916.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13700.2916.1 vs. uniprot
Match: D7FQF2_ECTSI (DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQF2_ECTSI) HSP 1 Score: 204 bits (519), Expect = 1.560e-61 Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 1
Query: 1 MPELPEVETSRLYVEEFCLGSTITNVHATEQGGGPRDGQFDDIVIGEDVTAKSLKDTLEGRKIVELRRRGKQMWFVLDKPPHPLFHFGMTGAFTVKG 291
MPELPEVETSRLYVEEFCLGSTITNVHATEQGGGPRDGQFDDIVIGED+TAKSLKDTLEGRKIVELRRRGKQMWFVLDKPPHPLFHFGMTGAFTVKG
Sbjct: 1 MPELPEVETSRLYVEEFCLGSTITNVHATEQGGGPRDGQFDDIVIGEDMTAKSLKDTLEGRKIVELRRRGKQMWFVLDKPPHPLFHFGMTGAFTVKG 97
BLAST of mRNA_Ecto-sp13_S_contig13700.2916.1 vs. uniprot
Match: A0A6H5JAV5_9PHAE (DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAV5_9PHAE) HSP 1 Score: 164 bits (416), Expect = 2.280e-45 Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1
Query: 1 MPELPEVETSRLYVEEFCLGSTITNVHATEQGGGPRDGQFDDIVIGEDVTAKSLKDTLEGRKIVELRRRGKQMWFVLDK 237
MPELPEVETSRLYVEEFCLGSTITNVHATEQGGGPRDGQFDDIVIGEDVTAKSLKDTLEGRKIVELRRRGKQMWFVLDK
Sbjct: 1 MPELPEVETSRLYVEEFCLGSTITNVHATEQGGGPRDGQFDDIVIGEDVTAKSLKDTLEGRKIVELRRRGKQMWFVLDK 79
BLAST of mRNA_Ecto-sp13_S_contig13700.2916.1 vs. uniprot
Match: A0A7S1N840_9EUGL (DNA-(apurinic or apyrimidinic site) lyase (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1N840_9EUGL) HSP 1 Score: 120 bits (300), Expect = 2.180e-30 Identity = 58/98 (59.18%), Postives = 70/98 (71.43%), Query Frame = 1
Query: 1 MPELPEVETSRLYVEEFCLGSTITNVHATEQGGGPRDGQFDDIVIGEDVTAKSLKDTLEGRKIVELRRRGKQMWFVLDKPP-HPLFHFGMTGAFTVKG 291
MPELPEV+ +R V + C G I V E GGGPRDGQFDDIVIGE VT + L +++GRK+V + R+GKQ+WF L PLFHFGMTG+FTVKG
Sbjct: 15 MPELPEVDAARQLVMQHCGGKVIDQVLCVESGGGPRDGQFDDIVIGEGVTPEKLTKSMKGRKLVAVHRKGKQLWFELGGGDLSPLFHFGMTGSFTVKG 112
BLAST of mRNA_Ecto-sp13_S_contig13700.2916.1 vs. uniprot
Match: A0A7S2CVY2_9EUKA (DNA-(apurinic or apyrimidinic site) lyase (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CVY2_9EUKA) HSP 1 Score: 114 bits (286), Expect = 1.990e-29 Identity = 53/98 (54.08%), Postives = 71/98 (72.45%), Query Frame = 1
Query: 1 MPELPEVETSRLYVEEFCLGSTITNVHATEQGGGPRDGQFDDIVIGE-DVTAKSLKDTLEGRKIVELRRRGKQMWFVLDKPPHPLFHFGMTGAFTVKG 291
MPELPEVE +R + + C G +I V + E GGGPR GQFD+IV + + TA S+ L+G+++VE+RRRGKQ+W +L PPH L HFGMTG+F V+G
Sbjct: 1 MPELPEVEAARRLLTDHCAGKSIAMVVSLEGGGGPRSGQFDNIVNDDPECTATSVATALQGKRVVEVRRRGKQLWLLLSAPPHLLAHFGMTGSFVVRG 98
BLAST of mRNA_Ecto-sp13_S_contig13700.2916.1 vs. uniprot
Match: A0A0M0JLU5_9EUKA (DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JLU5_9EUKA) HSP 1 Score: 113 bits (283), Expect = 6.120e-28 Identity = 54/98 (55.10%), Postives = 67/98 (68.37%), Query Frame = 1
Query: 1 MPELPEVETSRLYVEEFCLGSTITNVHATEQGGGPRDGQFDDIVIGE-DVTAKSLKDTLEGRKIVELRRRGKQMWFVLDKPPHPLFHFGMTGAFTVKG 291
MPELPEVET+R + C+ IT E GGGPRDG FD+IV + + A + LEG+++VE+RRRGKQ+W VL PPH L HFGMTGAF V+G
Sbjct: 1 MPELPEVETARNLLATHCVSQRITMAVTVEGGGGPRDGLFDEIVFDDKEADAAIVSSLLEGKQLVEVRRRGKQLWLVLSSPPHLLAHFGMTGAFVVRG 98
BLAST of mRNA_Ecto-sp13_S_contig13700.2916.1 vs. uniprot
Match: A0A835YY62_9STRA (DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY62_9STRA) HSP 1 Score: 107 bits (267), Expect = 4.080e-25 Identity = 49/93 (52.69%), Postives = 65/93 (69.89%), Query Frame = 1
Query: 1 MPELPEVETSRLYVEEFCLGSTITNVHATEQGGGPRDGQFDDIVIGEDVTAKSLKDTLEGRKIVELRRRGKQMWFVLD-KPPHPLFHFGMTGA 276
MPELPEVE +R +EE C+G+ I +V+A E GGGPRDGQFDDI++GE VT + + L+GRK++ R+GK +W L+ K HP H GMT
Sbjct: 1 MPELPEVECARRLLEEHCVGAKIVSVNARESGGGPRDGQFDDIIMGEGVTEEDVVAALKGRKLLHAGRKGKNLWLELEGKGKHPTMHLGMTAC 93
BLAST of mRNA_Ecto-sp13_S_contig13700.2916.1 vs. uniprot
Match: A0A7S3HGH2_9STRA (DNA-(apurinic or apyrimidinic site) lyase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HGH2_9STRA) HSP 1 Score: 100 bits (249), Expect = 4.500e-23 Identity = 53/105 (50.48%), Postives = 67/105 (63.81%), Query Frame = 1
Query: 1 MPELPEVETSRLYVEEFCLGSTITNVHATEQGGGPRDGQFDDIVI-----GEDVTAKSLKDTLEGRKIVE-LRRRGKQMWFVLDKPPHP--LFHFGMTGAFTVKG 291
MPELPEVE +R ++E C GSTI +V EQGGGPR+G FDDIV G ++SL T RK ++ + R+GKQ WF +P P LFHFGMTG+ +KG
Sbjct: 1 MPELPEVEAARRFIERLCAGSTIVSVTTREQGGGPREGSFDDIVFEHVSDGTTNDSESLYHTALLRKTLKCVHRKGKQFWFEFAEPESPCVLFHFGMTGSCAIKG 105
BLAST of mRNA_Ecto-sp13_S_contig13700.2916.1 vs. uniprot
Match: A0A7S0NUS3_9EUKA (DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NUS3_9EUKA) HSP 1 Score: 100 bits (249), Expect = 5.060e-23 Identity = 50/103 (48.54%), Postives = 64/103 (62.14%), Query Frame = 1
Query: 1 MPELPEVETSRLYVEEFCLGSTITNVHATEQGGGPRDGQFDDIVIGEDVTAKSLKDTLEGRKIVELRRRGKQMWFVLDKPPHP------LFHFGMTGAFTVKG 291
MPELPEVE R +E LG +T + ATEQGGGPRDG+FDD ++GE VT L L+ + ++ ++RRGKQ+W L L HFGMTGA +KG
Sbjct: 1 MPELPEVEAQRRTIEAATLGKQVTLLVATEQGGGPRDGEFDDKIVGEGVTPPELAAALQDKWVLAVKRRGKQLWVELSATRGGACCGCLLLHFGMTGAVVIKG 103
BLAST of mRNA_Ecto-sp13_S_contig13700.2916.1 vs. uniprot
Match: R1ELS3_EMIHU (DNA-(apurinic or apyrimidinic site) lyase n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ELS3_EMIHU) HSP 1 Score: 97.1 bits (240), Expect = 1.130e-21 Identity = 52/103 (50.49%), Postives = 63/103 (61.17%), Query Frame = 1
Query: 1 MPELPEVETSRLYVEEFCLGSTITNVHATEQGGGPRDGQFDDIVIGEDVTAKSLKDTLEGRKIVELRRRGKQMWFVLDKPPHP------LFHFGMTGAFTVKG 291
MPELPEVE R +E LG I + A EQGGGPR+GQFDD VI E+VT L TL+ R ++ +RRRGKQ+W L + L H GMTGA V+G
Sbjct: 1 MPELPEVEAQRSTIEAATLGRRIATLIAVEQGGGPREGQFDDKVIAEEVTPDVLAITLQDRWVLGVRRRGKQLWLELGESKGGACCACLLIHMGMTGAVIVQG 103
BLAST of mRNA_Ecto-sp13_S_contig13700.2916.1 vs. uniprot
Match: A0A7S0PXV9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PXV9_9EUKA) HSP 1 Score: 85.5 bits (210), Expect = 1.030e-19 Identity = 43/77 (55.84%), Postives = 49/77 (63.64%), Query Frame = 1
Query: 1 MPELPEVETSRLYVEEFCLGSTITNVHATEQGGGPRDGQFDDIVIGEDVTAKSLKDTLEGRKIVELRRRGKQMWFVL 231
MPELPEVE R ++E +G I + ATEQGGGPRDG FDD V+ E V L LEGR I RRRGKQ+W L
Sbjct: 5 MPELPEVEAQRRMLQETVVGMRIDALCATEQGGGPRDGMFDDKVVAEGVCVVDLAAALEGRWICAARRRGKQLWLEL 81 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13700.2916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13700.2916.1 >prot_Ecto-sp13_S_contig13700.2916.1 ID=prot_Ecto-sp13_S_contig13700.2916.1|Name=mRNA_Ecto-sp13_S_contig13700.2916.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp MPELPEVETSRLYVEEFCLGSTITNVHATEQGGGPRDGQFDDIVIGEDVTback to top mRNA from alignment at Ecto-sp13_S_contig13700:2852..3984+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13700.2916.1 ID=mRNA_Ecto-sp13_S_contig13700.2916.1|Name=mRNA_Ecto-sp13_S_contig13700.2916.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1133bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13700:2852..3984+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13700:2852..3984+ >mRNA_Ecto-sp13_S_contig13700.2916.1 ID=mRNA_Ecto-sp13_S_contig13700.2916.1|Name=mRNA_Ecto-sp13_S_contig13700.2916.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13700:2852..3984+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |