mRNA_Ecto-sp13_S_contig13700.2916.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13700.2916.1
Unique NamemRNA_Ecto-sp13_S_contig13700.2916.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13700.2916.1 vs. uniprot
Match: D7FQF2_ECTSI (DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQF2_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 1.560e-61
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 1
Query:    1 MPELPEVETSRLYVEEFCLGSTITNVHATEQGGGPRDGQFDDIVIGEDVTAKSLKDTLEGRKIVELRRRGKQMWFVLDKPPHPLFHFGMTGAFTVKG 291
            MPELPEVETSRLYVEEFCLGSTITNVHATEQGGGPRDGQFDDIVIGED+TAKSLKDTLEGRKIVELRRRGKQMWFVLDKPPHPLFHFGMTGAFTVKG
Sbjct:    1 MPELPEVETSRLYVEEFCLGSTITNVHATEQGGGPRDGQFDDIVIGEDMTAKSLKDTLEGRKIVELRRRGKQMWFVLDKPPHPLFHFGMTGAFTVKG 97          
BLAST of mRNA_Ecto-sp13_S_contig13700.2916.1 vs. uniprot
Match: A0A6H5JAV5_9PHAE (DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAV5_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 2.280e-45
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1
Query:    1 MPELPEVETSRLYVEEFCLGSTITNVHATEQGGGPRDGQFDDIVIGEDVTAKSLKDTLEGRKIVELRRRGKQMWFVLDK 237
            MPELPEVETSRLYVEEFCLGSTITNVHATEQGGGPRDGQFDDIVIGEDVTAKSLKDTLEGRKIVELRRRGKQMWFVLDK
Sbjct:    1 MPELPEVETSRLYVEEFCLGSTITNVHATEQGGGPRDGQFDDIVIGEDVTAKSLKDTLEGRKIVELRRRGKQMWFVLDK 79          
BLAST of mRNA_Ecto-sp13_S_contig13700.2916.1 vs. uniprot
Match: A0A7S1N840_9EUGL (DNA-(apurinic or apyrimidinic site) lyase (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1N840_9EUGL)

HSP 1 Score: 120 bits (300), Expect = 2.180e-30
Identity = 58/98 (59.18%), Postives = 70/98 (71.43%), Query Frame = 1
Query:    1 MPELPEVETSRLYVEEFCLGSTITNVHATEQGGGPRDGQFDDIVIGEDVTAKSLKDTLEGRKIVELRRRGKQMWFVLDKPP-HPLFHFGMTGAFTVKG 291
            MPELPEV+ +R  V + C G  I  V   E GGGPRDGQFDDIVIGE VT + L  +++GRK+V + R+GKQ+WF L      PLFHFGMTG+FTVKG
Sbjct:   15 MPELPEVDAARQLVMQHCGGKVIDQVLCVESGGGPRDGQFDDIVIGEGVTPEKLTKSMKGRKLVAVHRKGKQLWFELGGGDLSPLFHFGMTGSFTVKG 112          
BLAST of mRNA_Ecto-sp13_S_contig13700.2916.1 vs. uniprot
Match: A0A7S2CVY2_9EUKA (DNA-(apurinic or apyrimidinic site) lyase (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CVY2_9EUKA)

HSP 1 Score: 114 bits (286), Expect = 1.990e-29
Identity = 53/98 (54.08%), Postives = 71/98 (72.45%), Query Frame = 1
Query:    1 MPELPEVETSRLYVEEFCLGSTITNVHATEQGGGPRDGQFDDIVIGE-DVTAKSLKDTLEGRKIVELRRRGKQMWFVLDKPPHPLFHFGMTGAFTVKG 291
            MPELPEVE +R  + + C G +I  V + E GGGPR GQFD+IV  + + TA S+   L+G+++VE+RRRGKQ+W +L  PPH L HFGMTG+F V+G
Sbjct:    1 MPELPEVEAARRLLTDHCAGKSIAMVVSLEGGGGPRSGQFDNIVNDDPECTATSVATALQGKRVVEVRRRGKQLWLLLSAPPHLLAHFGMTGSFVVRG 98          
BLAST of mRNA_Ecto-sp13_S_contig13700.2916.1 vs. uniprot
Match: A0A0M0JLU5_9EUKA (DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JLU5_9EUKA)

HSP 1 Score: 113 bits (283), Expect = 6.120e-28
Identity = 54/98 (55.10%), Postives = 67/98 (68.37%), Query Frame = 1
Query:    1 MPELPEVETSRLYVEEFCLGSTITNVHATEQGGGPRDGQFDDIVIGE-DVTAKSLKDTLEGRKIVELRRRGKQMWFVLDKPPHPLFHFGMTGAFTVKG 291
            MPELPEVET+R  +   C+   IT     E GGGPRDG FD+IV  + +  A  +   LEG+++VE+RRRGKQ+W VL  PPH L HFGMTGAF V+G
Sbjct:    1 MPELPEVETARNLLATHCVSQRITMAVTVEGGGGPRDGLFDEIVFDDKEADAAIVSSLLEGKQLVEVRRRGKQLWLVLSSPPHLLAHFGMTGAFVVRG 98          
BLAST of mRNA_Ecto-sp13_S_contig13700.2916.1 vs. uniprot
Match: A0A835YY62_9STRA (DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY62_9STRA)

HSP 1 Score: 107 bits (267), Expect = 4.080e-25
Identity = 49/93 (52.69%), Postives = 65/93 (69.89%), Query Frame = 1
Query:    1 MPELPEVETSRLYVEEFCLGSTITNVHATEQGGGPRDGQFDDIVIGEDVTAKSLKDTLEGRKIVELRRRGKQMWFVLD-KPPHPLFHFGMTGA 276
            MPELPEVE +R  +EE C+G+ I +V+A E GGGPRDGQFDDI++GE VT + +   L+GRK++   R+GK +W  L+ K  HP  H GMT  
Sbjct:    1 MPELPEVECARRLLEEHCVGAKIVSVNARESGGGPRDGQFDDIIMGEGVTEEDVVAALKGRKLLHAGRKGKNLWLELEGKGKHPTMHLGMTAC 93          
BLAST of mRNA_Ecto-sp13_S_contig13700.2916.1 vs. uniprot
Match: A0A7S3HGH2_9STRA (DNA-(apurinic or apyrimidinic site) lyase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HGH2_9STRA)

HSP 1 Score: 100 bits (249), Expect = 4.500e-23
Identity = 53/105 (50.48%), Postives = 67/105 (63.81%), Query Frame = 1
Query:    1 MPELPEVETSRLYVEEFCLGSTITNVHATEQGGGPRDGQFDDIVI-----GEDVTAKSLKDTLEGRKIVE-LRRRGKQMWFVLDKPPHP--LFHFGMTGAFTVKG 291
            MPELPEVE +R ++E  C GSTI +V   EQGGGPR+G FDDIV      G    ++SL  T   RK ++ + R+GKQ WF   +P  P  LFHFGMTG+  +KG
Sbjct:    1 MPELPEVEAARRFIERLCAGSTIVSVTTREQGGGPREGSFDDIVFEHVSDGTTNDSESLYHTALLRKTLKCVHRKGKQFWFEFAEPESPCVLFHFGMTGSCAIKG 105          
BLAST of mRNA_Ecto-sp13_S_contig13700.2916.1 vs. uniprot
Match: A0A7S0NUS3_9EUKA (DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NUS3_9EUKA)

HSP 1 Score: 100 bits (249), Expect = 5.060e-23
Identity = 50/103 (48.54%), Postives = 64/103 (62.14%), Query Frame = 1
Query:    1 MPELPEVETSRLYVEEFCLGSTITNVHATEQGGGPRDGQFDDIVIGEDVTAKSLKDTLEGRKIVELRRRGKQMWFVLDKPPHP------LFHFGMTGAFTVKG 291
            MPELPEVE  R  +E   LG  +T + ATEQGGGPRDG+FDD ++GE VT   L   L+ + ++ ++RRGKQ+W  L            L HFGMTGA  +KG
Sbjct:    1 MPELPEVEAQRRTIEAATLGKQVTLLVATEQGGGPRDGEFDDKIVGEGVTPPELAAALQDKWVLAVKRRGKQLWVELSATRGGACCGCLLLHFGMTGAVVIKG 103          
BLAST of mRNA_Ecto-sp13_S_contig13700.2916.1 vs. uniprot
Match: R1ELS3_EMIHU (DNA-(apurinic or apyrimidinic site) lyase n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ELS3_EMIHU)

HSP 1 Score: 97.1 bits (240), Expect = 1.130e-21
Identity = 52/103 (50.49%), Postives = 63/103 (61.17%), Query Frame = 1
Query:    1 MPELPEVETSRLYVEEFCLGSTITNVHATEQGGGPRDGQFDDIVIGEDVTAKSLKDTLEGRKIVELRRRGKQMWFVLDKPPHP------LFHFGMTGAFTVKG 291
            MPELPEVE  R  +E   LG  I  + A EQGGGPR+GQFDD VI E+VT   L  TL+ R ++ +RRRGKQ+W  L +          L H GMTGA  V+G
Sbjct:    1 MPELPEVEAQRSTIEAATLGRRIATLIAVEQGGGPREGQFDDKVIAEEVTPDVLAITLQDRWVLGVRRRGKQLWLELGESKGGACCACLLIHMGMTGAVIVQG 103          
BLAST of mRNA_Ecto-sp13_S_contig13700.2916.1 vs. uniprot
Match: A0A7S0PXV9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PXV9_9EUKA)

HSP 1 Score: 85.5 bits (210), Expect = 1.030e-19
Identity = 43/77 (55.84%), Postives = 49/77 (63.64%), Query Frame = 1
Query:    1 MPELPEVETSRLYVEEFCLGSTITNVHATEQGGGPRDGQFDDIVIGEDVTAKSLKDTLEGRKIVELRRRGKQMWFVL 231
            MPELPEVE  R  ++E  +G  I  + ATEQGGGPRDG FDD V+ E V    L   LEGR I   RRRGKQ+W  L
Sbjct:    5 MPELPEVEAQRRMLQETVVGMRIDALCATEQGGGPRDGMFDDKVVAEGVCVVDLAAALEGRWICAARRRGKQLWLEL 81          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13700.2916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQF2_ECTSI1.560e-6198.97DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=... [more]
A0A6H5JAV5_9PHAE2.280e-45100.00DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=... [more]
A0A7S1N840_9EUGL2.180e-3059.18DNA-(apurinic or apyrimidinic site) lyase (Fragmen... [more]
A0A7S2CVY2_9EUKA1.990e-2954.08DNA-(apurinic or apyrimidinic site) lyase (Fragmen... [more]
A0A0M0JLU5_9EUKA6.120e-2855.10DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=... [more]
A0A835YY62_9STRA4.080e-2552.69DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=... [more]
A0A7S3HGH2_9STRA4.500e-2350.48DNA-(apurinic or apyrimidinic site) lyase (Fragmen... [more]
A0A7S0NUS3_9EUKA5.060e-2348.54DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=... [more]
R1ELS3_EMIHU1.130e-2150.49DNA-(apurinic or apyrimidinic site) lyase n=3 Tax=... [more]
A0A7S0PXV9_9EUKA1.030e-1955.84Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13700contigEcto-sp13_S_contig13700:2852..3984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score204.1
Seed ortholog evalue2.9e-50
Seed eggNOG ortholog2880.D7FQF2
Model size292
KEGG koko:K10563
KEGG Pathwayko03410,map03410
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360
Exons3
EggNOG free text desc.oxidized purine nucleobase lesion DNA N-glycosylase activity
EggNOG OGs2QVDB@2759,COG0266@1
EC3.2.2.23,4.2.99.18
Cds size291
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462731.7942266-CDS-Ecto-sp13_S_contig13700:2851..29561681462731.7942266-CDS-Ecto-sp13_S_contig13700:2851..2956Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13700 2852..2956 +
1681462731.8065891-CDS-Ecto-sp13_S_contig13700:3345..34761681462731.8065891-CDS-Ecto-sp13_S_contig13700:3345..3476Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13700 3346..3476 +
1681462731.8166606-CDS-Ecto-sp13_S_contig13700:3929..39841681462731.8166606-CDS-Ecto-sp13_S_contig13700:3929..3984Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13700 3930..3984 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13700.2916.1prot_Ecto-sp13_S_contig13700.2916.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13700 2852..3984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13700.2916.1

>prot_Ecto-sp13_S_contig13700.2916.1 ID=prot_Ecto-sp13_S_contig13700.2916.1|Name=mRNA_Ecto-sp13_S_contig13700.2916.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
MPELPEVETSRLYVEEFCLGSTITNVHATEQGGGPRDGQFDDIVIGEDVT
AKSLKDTLEGRKIVELRRRGKQMWFVLDKPPHPLFHFGMTGAFTVKG
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mRNA from alignment at Ecto-sp13_S_contig13700:2852..3984+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13700.2916.1 ID=mRNA_Ecto-sp13_S_contig13700.2916.1|Name=mRNA_Ecto-sp13_S_contig13700.2916.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1133bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13700:2852..3984+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCGAGTTACCTGAAGTGGAAACGTCTCGCCTCTACGTGGAGGAGTT CTGTCTCGGCAGTACTATCACCAATGTCCATGCGACGGAACAGGGAGGTG GACCGGTGAGCTTTTCACGAGATACCGAAAATTTGAATTTGAAGGCAACC CAAACGAATAACGGACCACCAATCGAGGAGGTGTAGACTGCTGCGTGGAG AGACCATCTCTCGCGGTTGGCGAGATGCGAATGGGTACGTGAAGCACCAC TGGCCGGTGCAGGAGACCTCACACGGCCCAATGCTTTGAGAAATGTTCCG CGTCGTCATGCACTCAATCACGCAAGTTTGAGTACGTAGTTGTGAGCGTG AAATCGAACGAGGTTGCTGCCGCAGAAGTCGCATCCAGGCCGTCCTCTGA CTCATGTTGCTTCATGAGGTGTATGCACAGATACAGGTATCATGTTCTGG TTCGTGTGGATATATCTCCGCGTTGCTCTGTTAACACCCGGCAGCGAGAC GGCCAATTCGACGATATCGTCATTGGGGAGGACGTGACGGCGAAAAGCTT GAAGGACACTCTTGAGGGGCGCAAAATTGTGGAACTCAGACGTCGCGGGA AGCAGATGTGGTTCGTTCTGGACAAGTGAGTTGCTGGCCACTTGGCCACC ATACGTGTCGTGGTGAGCCTGTTGCAGGTCTATCATTGCTGCACCTTACG CGGGTATCAGTAAATAGAAACAGGGGTTGGTCATTACCACTGCTATGAAT CCGCTTATTATCCTGGACTTTATGTTGAGATAATAGGATAGAGAGGATTT TCGGTGAGAGAAATAACGATGTAGACTCAGTAAAGCAGTCGTGTATGCTT TGTGTTGCTGTCTTTCGCCCGGGTTCCGGCGTGCATGCGCTCGGGTGAGC CGTCTACACTGCGCCTCTCGCGTTTGTGGCTGCAAACTGCTGGTGATACC ACTGAAGCACAGGTATATCAATGAAAAATACCTTGGTACTGAAGTCGATA AAAACACGGGTGAAACCAGTACAATATGGTGTATTGTAGCCGCCCCCCCT TTTCCCCGCCGCGTCCGCTTTCCTCTAGGCCACCCCATCCCCTCTTTCAT TTCGGCATGACGGGGGCCTTTACTGTAAAAGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13700:2852..3984+

>mRNA_Ecto-sp13_S_contig13700.2916.1 ID=mRNA_Ecto-sp13_S_contig13700.2916.1|Name=mRNA_Ecto-sp13_S_contig13700.2916.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13700:2852..3984+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCGAGTTACCTGAAGTGGAAACGTCTCGCCTCTACGTGGAGGAGTT
CTGTCTCGGCAGTACTATCACCAATGTCCATGCGACGGAACAGGGAGGTG
GACCGCGAGACGGCCAATTCGACGATATCGTCATTGGGGAGGACGTGACG
GCGAAAAGCTTGAAGGACACTCTTGAGGGGCGCAAAATTGTGGAACTCAG
ACGTCGCGGGAAGCAGATGTGGTTCGTTCTGGACAAGCCACCCCATCCCC
TCTTTCATTTCGGCATGACGGGGGCCTTTACTGTAAAAGGA
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