mRNA_Ecto-sp13_S_contig13681.2899.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13681.2899.1 vs. uniprot
Match: D7FN17_ECTSI (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN17_ECTSI) HSP 1 Score: 209 bits (532), Expect = 4.500e-66 Identity = 102/108 (94.44%), Postives = 107/108 (99.07%), Query Frame = 1
Query: 1 ARIQVLHAMLGVVRSPWLTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPYPLFYLRYSLFAVLYPTGIAGEVMTMLAGLPDLK 324
A ++VLHAMLGVVRSPW+TTLMQVSSRI+LVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSP+PLFYLRYSLFAVLYPTGIAGEVMTMLAGLPDLK
Sbjct: 56 ALMEVLHAMLGVVRSPWVTTLMQVSSRIILVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPFPLFYLRYSLFAVLYPTGIAGEVMTMLAGLPDLK 163
BLAST of mRNA_Ecto-sp13_S_contig13681.2899.1 vs. uniprot
Match: A0A835ZGJ3_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGJ3_9STRA) HSP 1 Score: 130 bits (327), Expect = 4.220e-35 Identity = 59/108 (54.63%), Postives = 84/108 (77.78%), Query Frame = 1
Query: 1 ARIQVLHAMLGVVRSPWLTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPYPLFYLRYSLFAVLYPTGIAGEVMTMLAGLPDLK 324
A +++LH+++G+V SPW+TTL+QVSSR+V+ WGF+++ ++Q L SWA VE+PRYLFY F ++ + PYPLF+LRYSLFAVLYP+GI GE+MT++ G LK
Sbjct: 54 AVMEILHSLVGLVPSPWMTTLLQVSSRLVVAWGFLYSCEASQDHYAMALTTVSWALVEVPRYLFYVFNIMGNVPYPLFWLRYSLFAVLYPSGITGEIMTIVNGFDCLK 161
BLAST of mRNA_Ecto-sp13_S_contig13681.2899.1 vs. uniprot
Match: A0A482RN91_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RN91_9ARCH) HSP 1 Score: 117 bits (293), Expect = 2.820e-30 Identity = 58/107 (54.21%), Postives = 75/107 (70.09%), Query Frame = 1
Query: 1 ARIQVLHAMLGVVRSPWLTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPYPLFYLRYSLFAVLYPTGIAGEVMTMLAGLPDL 321
A ++VL+A+ G+VRSPW+T LMQV SR+ +W M P+ Q L +L TSWA VE+PRYLFY + + PYPLF+LRYSLFA+LYPTGI GE+ M L +L
Sbjct: 28 AVLEVLNALFGIVRSPWVTVLMQVFSRVWTLWAVMDMAPTAQHSLFFLLACTSWALVEVPRYLFYALSIANAVPYPLFWLRYSLFAILYPTGITGELGCMYLSLFEL 134
BLAST of mRNA_Ecto-sp13_S_contig13681.2899.1 vs. uniprot
Match: A0A7S3HHK7_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HHK7_9STRA) HSP 1 Score: 112 bits (281), Expect = 4.210e-28 Identity = 55/100 (55.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query: 1 ARIQVLHAMLGVVRSPWLTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPYPLFYLRYSLFAVLYPTGIAGEVMTM 300
A ++VLH+M+G+V+SPW T MQV SR+ +W M + Q + +L TSW VE+PRYLFY +L + PYPLF+LRYSLFAVLYPTGI GE+ TM
Sbjct: 55 AVLEVLHSMVGLVKSPWATAFMQVFSRVWTLWAIMDTTDAAQTTVFFVLACTSWGLVEVPRYLFYALNLLNAVPYPLFWLRYSLFAVLYPTGITGELGTM 154
BLAST of mRNA_Ecto-sp13_S_contig13681.2899.1 vs. uniprot
Match: A0A6G0XHX3_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHX3_9STRA) HSP 1 Score: 112 bits (279), Expect = 7.990e-28 Identity = 57/122 (46.72%), Postives = 80/122 (65.57%), Query Frame = 1
Query: 1 ARIQVLHAMLGVVRSPWLTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPYPLFYLRYSLFAVLYPTGIAGEVMTMLAGLPDLKVGVSAFHCMQSRSV 366
A +++LHAM+G+VRSP +T++QVSSR+ L+W VP T+ G ++ +TSW+ VE+PRY FY + + P LF+LRY LF VLYPTGI+GEV ML+ LP + G A +V
Sbjct: 57 AIMEILHAMVGIVRSPVFSTVLQVSSRLALLWMINDLVPETRAHWGFVMMVTSWSLVEVPRYAFYALNLWNAVPDWLFFLRYHLFMVLYPTGISGEVSCMLSALPYVTNGAYAIQMPNDHNV 178
BLAST of mRNA_Ecto-sp13_S_contig13681.2899.1 vs. uniprot
Match: A0A2D4BIL5_PYTIN (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BIL5_PYTIN) HSP 1 Score: 111 bits (277), Expect = 1.750e-27 Identity = 56/135 (41.48%), Postives = 84/135 (62.22%), Query Frame = 1
Query: 1 ARIQVLHAMLGVVRSPWLTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPYPLFYLRYSLFAVLYPTGIAGEVMTMLAGLPDLKVGVSAFHCMQSRSVVLPCFMFLPGLGV 405
A ++++HA+LG+VRSP + +MQ ++R+ L+W P++ GQ+G +L + SW+ E+PRY FY F V+ P + YLRY+LF VLYP G GEVMTML+ LP +K A +V +P ++ L V
Sbjct: 64 AALEIVHAVLGIVRSPVVNAVMQAAARMWLLWAITPHWPASHGQIGCVLMVLSWSLAEVPRYTFYAFNVIGRVPSSIVYLRYTLFLVLYPAGFTGEVMTMLSTLPAMKASGLAIRLPSPFTVDIPYYVMAFALAV 198
BLAST of mRNA_Ecto-sp13_S_contig13681.2899.1 vs. uniprot
Match: A0A024TZ79_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024TZ79_9STRA) HSP 1 Score: 109 bits (273), Expect = 6.600e-27 Identity = 57/122 (46.72%), Postives = 78/122 (63.93%), Query Frame = 1
Query: 1 ARIQVLHAMLGVVRSPWLTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPYPLFYLRYSLFAVLYPTGIAGEVMTMLAGLPDLKVGVSAFHCMQSRSV 366
A +VLHAMLG+VRSP +TLMQVSSR+ LVW P ++ G +L + SW+ VE+PRY FY +L++ P LF+LRY LF VLYP+G+ GEV M+ LP L G + + ++
Sbjct: 59 AVFEVLHAMLGLVRSPVGSTLMQVSSRLFLVWAINVLCPDSRYHWGFILMVASWSLVEVPRYAFYALNLLEAVPDWLFFLRYHLFMVLYPSGVTGEVTCMVKALPFLSTGAYSIQMPNTHNI 180
BLAST of mRNA_Ecto-sp13_S_contig13681.2899.1 vs. uniprot
Match: A0A147B7T9_9ACAR (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (Fragment) n=1 Tax=Carios mimon TaxID=360319 RepID=A0A147B7T9_9ACAR) HSP 1 Score: 107 bits (268), Expect = 7.270e-27 Identity = 48/108 (44.44%), Postives = 74/108 (68.52%), Query Frame = 1
Query: 1 ARIQVLHAMLGVVRSPWLTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPYPLFYLRYSLFAVLYPTGIAGEVMTMLAGLPDLK 324
A ++V+H ++G+V S W TL+Q+ SR+++VWG + VP +QGQ G ++ + +W EI RY FY + + PY L + RYS F VLYPTG++GE++TM+ LP +K
Sbjct: 13 ALLEVVHCLIGIVASNWFLTLIQILSRLMVVWGILVPVPESQGQYGIVMLLVAWCIAEITRYSFYGLTLYNACPYGLTWCRYSFFLVLYPTGVSGEIITMVTALPYIK 120
BLAST of mRNA_Ecto-sp13_S_contig13681.2899.1 vs. uniprot
Match: A0A8K1FNL1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FNL1_PYTOL) HSP 1 Score: 109 bits (272), Expect = 9.530e-27 Identity = 60/143 (41.96%), Postives = 87/143 (60.84%), Query Frame = 1
Query: 1 ARIQVLHAMLGVVRSPWLTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPYPLFYLRYSLFAVLYPTGIAGEVMTMLAGLPDLKVGVSAFHCMQSRSVVLPCFM--------FLPGLGV 405
A ++++HA LG VRSP +TL+QVSSR+ LVW P ++ Q+G L + SW VE+PRY FY + P LF+LRY LF VLYP+G+AGEV+ +++ LP L+ GV A + +V + + ++PGL V
Sbjct: 64 AAMEIIHAALGFVRSPLGSTLIQVSSRLWLVWAINELCPISRYQIGFPLMVLSWGLVEVPRYSFYALNLYNLVPSFLFFLRYHLFMVLYPSGVAGEVLCLISALPYLQTGVYAIQMPNAHNVAISLYTVVLMSIVTYIPGLPV 206
BLAST of mRNA_Ecto-sp13_S_contig13681.2899.1 vs. uniprot
Match: A0A1Z5KVW7_ORNMO (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (Fragment) n=2 Tax=Ornithodoros TaxID=6937 RepID=A0A1Z5KVW7_ORNMO) HSP 1 Score: 108 bits (270), Expect = 1.850e-26 Identity = 49/108 (45.37%), Postives = 74/108 (68.52%), Query Frame = 1
Query: 1 ARIQVLHAMLGVVRSPWLTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPYPLFYLRYSLFAVLYPTGIAGEVMTMLAGLPDLK 324
A ++V+H ++G+V S W TL+Q+ SR+++VWG + VP +Q Q G ++ + +W EI RY FY + S PY L + RYS F VLYPTG++GE++TM+A LP +K
Sbjct: 61 ALLEVVHCLVGLVASNWFLTLIQILSRLMVVWGILVPVPESQNQYGIVMLLVAWCIAEITRYSFYALSLYHSCPYALTWCRYSFFLVLYPTGVSGEIITMVAALPYIK 168 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13681.2899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13681.2899.1 >prot_Ecto-sp13_S_contig13681.2899.1 ID=prot_Ecto-sp13_S_contig13681.2899.1|Name=mRNA_Ecto-sp13_S_contig13681.2899.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=145bp MLGVVRSPWLTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVEback to top mRNA from alignment at Ecto-sp13_S_contig13681:1002..2029+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13681.2899.1 ID=mRNA_Ecto-sp13_S_contig13681.2899.1|Name=mRNA_Ecto-sp13_S_contig13681.2899.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1028bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13681:1002..2029+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13681:1002..2029+ >mRNA_Ecto-sp13_S_contig13681.2899.1 ID=mRNA_Ecto-sp13_S_contig13681.2899.1|Name=mRNA_Ecto-sp13_S_contig13681.2899.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13681:1002..2029+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |