mRNA_Ecto-sp13_S_contig13681.2899.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13681.2899.1
Unique NamemRNA_Ecto-sp13_S_contig13681.2899.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13681.2899.1 vs. uniprot
Match: D7FN17_ECTSI (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN17_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 4.500e-66
Identity = 102/108 (94.44%), Postives = 107/108 (99.07%), Query Frame = 1
Query:    1 ARIQVLHAMLGVVRSPWLTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPYPLFYLRYSLFAVLYPTGIAGEVMTMLAGLPDLK 324
            A ++VLHAMLGVVRSPW+TTLMQVSSRI+LVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSP+PLFYLRYSLFAVLYPTGIAGEVMTMLAGLPDLK
Sbjct:   56 ALMEVLHAMLGVVRSPWVTTLMQVSSRIILVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPFPLFYLRYSLFAVLYPTGIAGEVMTMLAGLPDLK 163          
BLAST of mRNA_Ecto-sp13_S_contig13681.2899.1 vs. uniprot
Match: A0A835ZGJ3_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGJ3_9STRA)

HSP 1 Score: 130 bits (327), Expect = 4.220e-35
Identity = 59/108 (54.63%), Postives = 84/108 (77.78%), Query Frame = 1
Query:    1 ARIQVLHAMLGVVRSPWLTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPYPLFYLRYSLFAVLYPTGIAGEVMTMLAGLPDLK 324
            A +++LH+++G+V SPW+TTL+QVSSR+V+ WGF+++  ++Q      L   SWA VE+PRYLFY F ++ + PYPLF+LRYSLFAVLYP+GI GE+MT++ G   LK
Sbjct:   54 AVMEILHSLVGLVPSPWMTTLLQVSSRLVVAWGFLYSCEASQDHYAMALTTVSWALVEVPRYLFYVFNIMGNVPYPLFWLRYSLFAVLYPSGITGEIMTIVNGFDCLK 161          
BLAST of mRNA_Ecto-sp13_S_contig13681.2899.1 vs. uniprot
Match: A0A482RN91_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RN91_9ARCH)

HSP 1 Score: 117 bits (293), Expect = 2.820e-30
Identity = 58/107 (54.21%), Postives = 75/107 (70.09%), Query Frame = 1
Query:    1 ARIQVLHAMLGVVRSPWLTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPYPLFYLRYSLFAVLYPTGIAGEVMTMLAGLPDL 321
            A ++VL+A+ G+VRSPW+T LMQV SR+  +W  M   P+ Q  L  +L  TSWA VE+PRYLFY   +  + PYPLF+LRYSLFA+LYPTGI GE+  M   L +L
Sbjct:   28 AVLEVLNALFGIVRSPWVTVLMQVFSRVWTLWAVMDMAPTAQHSLFFLLACTSWALVEVPRYLFYALSIANAVPYPLFWLRYSLFAILYPTGITGELGCMYLSLFEL 134          
BLAST of mRNA_Ecto-sp13_S_contig13681.2899.1 vs. uniprot
Match: A0A7S3HHK7_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HHK7_9STRA)

HSP 1 Score: 112 bits (281), Expect = 4.210e-28
Identity = 55/100 (55.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:    1 ARIQVLHAMLGVVRSPWLTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPYPLFYLRYSLFAVLYPTGIAGEVMTM 300
            A ++VLH+M+G+V+SPW T  MQV SR+  +W  M    + Q  +  +L  TSW  VE+PRYLFY   +L + PYPLF+LRYSLFAVLYPTGI GE+ TM
Sbjct:   55 AVLEVLHSMVGLVKSPWATAFMQVFSRVWTLWAIMDTTDAAQTTVFFVLACTSWGLVEVPRYLFYALNLLNAVPYPLFWLRYSLFAVLYPTGITGELGTM 154          
BLAST of mRNA_Ecto-sp13_S_contig13681.2899.1 vs. uniprot
Match: A0A6G0XHX3_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHX3_9STRA)

HSP 1 Score: 112 bits (279), Expect = 7.990e-28
Identity = 57/122 (46.72%), Postives = 80/122 (65.57%), Query Frame = 1
Query:    1 ARIQVLHAMLGVVRSPWLTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPYPLFYLRYSLFAVLYPTGIAGEVMTMLAGLPDLKVGVSAFHCMQSRSV 366
            A +++LHAM+G+VRSP  +T++QVSSR+ L+W     VP T+   G ++ +TSW+ VE+PRY FY   +  + P  LF+LRY LF VLYPTGI+GEV  ML+ LP +  G  A       +V
Sbjct:   57 AIMEILHAMVGIVRSPVFSTVLQVSSRLALLWMINDLVPETRAHWGFVMMVTSWSLVEVPRYAFYALNLWNAVPDWLFFLRYHLFMVLYPTGISGEVSCMLSALPYVTNGAYAIQMPNDHNV 178          
BLAST of mRNA_Ecto-sp13_S_contig13681.2899.1 vs. uniprot
Match: A0A2D4BIL5_PYTIN (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BIL5_PYTIN)

HSP 1 Score: 111 bits (277), Expect = 1.750e-27
Identity = 56/135 (41.48%), Postives = 84/135 (62.22%), Query Frame = 1
Query:    1 ARIQVLHAMLGVVRSPWLTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPYPLFYLRYSLFAVLYPTGIAGEVMTMLAGLPDLKVGVSAFHCMQSRSVVLPCFMFLPGLGV 405
            A ++++HA+LG+VRSP +  +MQ ++R+ L+W      P++ GQ+G +L + SW+  E+PRY FY F V+   P  + YLRY+LF VLYP G  GEVMTML+ LP +K    A       +V +P ++    L V
Sbjct:   64 AALEIVHAVLGIVRSPVVNAVMQAAARMWLLWAITPHWPASHGQIGCVLMVLSWSLAEVPRYTFYAFNVIGRVPSSIVYLRYTLFLVLYPAGFTGEVMTMLSTLPAMKASGLAIRLPSPFTVDIPYYVMAFALAV 198          
BLAST of mRNA_Ecto-sp13_S_contig13681.2899.1 vs. uniprot
Match: A0A024TZ79_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024TZ79_9STRA)

HSP 1 Score: 109 bits (273), Expect = 6.600e-27
Identity = 57/122 (46.72%), Postives = 78/122 (63.93%), Query Frame = 1
Query:    1 ARIQVLHAMLGVVRSPWLTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPYPLFYLRYSLFAVLYPTGIAGEVMTMLAGLPDLKVGVSAFHCMQSRSV 366
            A  +VLHAMLG+VRSP  +TLMQVSSR+ LVW      P ++   G +L + SW+ VE+PRY FY   +L++ P  LF+LRY LF VLYP+G+ GEV  M+  LP L  G  +     + ++
Sbjct:   59 AVFEVLHAMLGLVRSPVGSTLMQVSSRLFLVWAINVLCPDSRYHWGFILMVASWSLVEVPRYAFYALNLLEAVPDWLFFLRYHLFMVLYPSGVTGEVTCMVKALPFLSTGAYSIQMPNTHNI 180          
BLAST of mRNA_Ecto-sp13_S_contig13681.2899.1 vs. uniprot
Match: A0A147B7T9_9ACAR (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (Fragment) n=1 Tax=Carios mimon TaxID=360319 RepID=A0A147B7T9_9ACAR)

HSP 1 Score: 107 bits (268), Expect = 7.270e-27
Identity = 48/108 (44.44%), Postives = 74/108 (68.52%), Query Frame = 1
Query:    1 ARIQVLHAMLGVVRSPWLTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPYPLFYLRYSLFAVLYPTGIAGEVMTMLAGLPDLK 324
            A ++V+H ++G+V S W  TL+Q+ SR+++VWG +  VP +QGQ G ++ + +W   EI RY FY   +  + PY L + RYS F VLYPTG++GE++TM+  LP +K
Sbjct:   13 ALLEVVHCLIGIVASNWFLTLIQILSRLMVVWGILVPVPESQGQYGIVMLLVAWCIAEITRYSFYGLTLYNACPYGLTWCRYSFFLVLYPTGVSGEIITMVTALPYIK 120          
BLAST of mRNA_Ecto-sp13_S_contig13681.2899.1 vs. uniprot
Match: A0A8K1FNL1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FNL1_PYTOL)

HSP 1 Score: 109 bits (272), Expect = 9.530e-27
Identity = 60/143 (41.96%), Postives = 87/143 (60.84%), Query Frame = 1
Query:    1 ARIQVLHAMLGVVRSPWLTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPYPLFYLRYSLFAVLYPTGIAGEVMTMLAGLPDLKVGVSAFHCMQSRSVVLPCFM--------FLPGLGV 405
            A ++++HA LG VRSP  +TL+QVSSR+ LVW      P ++ Q+G  L + SW  VE+PRY FY   +    P  LF+LRY LF VLYP+G+AGEV+ +++ LP L+ GV A     + +V +  +         ++PGL V
Sbjct:   64 AAMEIIHAALGFVRSPLGSTLIQVSSRLWLVWAINELCPISRYQIGFPLMVLSWGLVEVPRYSFYALNLYNLVPSFLFFLRYHLFMVLYPSGVAGEVLCLISALPYLQTGVYAIQMPNAHNVAISLYTVVLMSIVTYIPGLPV 206          
BLAST of mRNA_Ecto-sp13_S_contig13681.2899.1 vs. uniprot
Match: A0A1Z5KVW7_ORNMO (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (Fragment) n=2 Tax=Ornithodoros TaxID=6937 RepID=A0A1Z5KVW7_ORNMO)

HSP 1 Score: 108 bits (270), Expect = 1.850e-26
Identity = 49/108 (45.37%), Postives = 74/108 (68.52%), Query Frame = 1
Query:    1 ARIQVLHAMLGVVRSPWLTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPYPLFYLRYSLFAVLYPTGIAGEVMTMLAGLPDLK 324
            A ++V+H ++G+V S W  TL+Q+ SR+++VWG +  VP +Q Q G ++ + +W   EI RY FY   +  S PY L + RYS F VLYPTG++GE++TM+A LP +K
Sbjct:   61 ALLEVVHCLVGLVASNWFLTLIQILSRLMVVWGILVPVPESQNQYGIVMLLVAWCIAEITRYSFYALSLYHSCPYALTWCRYSFFLVLYPTGVSGEIITMVAALPYIK 168          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13681.2899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN17_ECTSI4.500e-6694.44Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A835ZGJ3_9STRA4.220e-3554.63Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A482RN91_9ARCH2.820e-3054.21Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3HHK7_9STRA4.210e-2855.00Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A6G0XHX3_9STRA7.990e-2846.72Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A2D4BIL5_PYTIN1.750e-2741.48Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A024TZ79_9STRA6.600e-2746.72Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A147B7T9_9ACAR7.270e-2744.44Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A8K1FNL1_PYTOL9.530e-2741.96Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1Z5KVW7_ORNMO1.850e-2645.37Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13681contigEcto-sp13_S_contig13681:1002..2029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score200.3
Seed ortholog evalue6.2e-49
Seed eggNOG ortholog2880.D7FN17
Model size459
KEGG rclassRC00770,RC01095
KEGG koko:K10703
KEGG ReactionR07760,R10827
KEGG Pathwayko00062,ko01040,ko01110,ko01212,map00062,map01040,map01110,map01212
KEGG ModuleM00415
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG free text desc.3-hydroxy-lignoceroyl-CoA dehydratase activity
EggNOG OGsCOG5198@1,KOG3187@2759
EC4.2.1.134
Cds size435
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462730.344541-UTR-Ecto-sp13_S_contig13681:1001..10251681462730.344541-UTR-Ecto-sp13_S_contig13681:1001..1025Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13681 1002..1025 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462730.360058-CDS-Ecto-sp13_S_contig13681:1025..11831681462730.360058-CDS-Ecto-sp13_S_contig13681:1025..1183Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13681 1026..1183 +
1681462730.3693998-CDS-Ecto-sp13_S_contig13681:1752..20291681462730.3693998-CDS-Ecto-sp13_S_contig13681:1752..2029Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13681 1753..2029 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13681.2899.1prot_Ecto-sp13_S_contig13681.2899.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13681 1026..2029 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13681.2899.1

>prot_Ecto-sp13_S_contig13681.2899.1 ID=prot_Ecto-sp13_S_contig13681.2899.1|Name=mRNA_Ecto-sp13_S_contig13681.2899.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=145bp
MLGVVRSPWLTTLMQVSSRIVLVWGFMWAVPSTQGQLGSMLCITSWACVE
IPRYLFYTFGVLKSSPYPLFYLRYSLFAVLYPTGIAGEVMTMLAGLPDLK
VGVSAFHCMQSRSVVLPCFMFLPGLGVVVVTVVVVTEVVALPVVF
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mRNA from alignment at Ecto-sp13_S_contig13681:1002..2029+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13681.2899.1 ID=mRNA_Ecto-sp13_S_contig13681.2899.1|Name=mRNA_Ecto-sp13_S_contig13681.2899.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1028bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13681:1002..2029+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCGCATTCAGGTTCTGCACGCGATGCTGGGAGTGGTCCGCTCCCCTTG GTTGACGACCCTCATGCAGGTGAGCTCGAGGATCGTCCTGGTGTGGGGCT TCATGTGGGCGGTACCGTCAACCCAGGGGCAGCTGGGCTCCATGCTGTGC ATCACGAGCTGGGCGTGCGTCGAAATCCCGAGGTGAACCTTGGACGGATG TTGCCTTCGACCGGTGTATATGTGTACCTACGGACGGTAGTAGGGTTGGT GACTCGTGCATGCAGCAAGTTGTTACGCGCAGTATACCCAGCGGCAATCG TCGAAGATGATTGGAAGGTCTTATGCTTTTATTTATTTTTTCTGAAGATG TCGAGGCGAAGCCAGGATTAGCTGCATCTTCGTCCGGAGCAATGTTGCGT GATGCGTACACGCAGCGGCAGCTGTGGCCATTTTTCGCCCTCAGTTTGTT GCGCACCCATTGCCGACATGGGGTTCACCAGAGAGCGTGATTCTGGTAAC CTCTGCCATCAAGCAAGGCGCACGACACTCTGCCCACCCCACCTATTGCT TTACTGTGACCACTCGTGTAGAAGGTACGGGGTAGGATCTCCCTATGAGC AGCCACGCCATGTGCGGTACACGGTGTTAAGATGGAGTTCTCTCTGCAAC GCTCTCGAGCAGATGATATTTCGTGGTGAATTCCGCGAATCCTTATCCAA TACACTTGCGCAATGTCGGCCCTCGTTTTCTGAACTGCTGTGTTTCCACA GGTACCTGTTCTACACGTTCGGCGTGCTGAAAAGCTCCCCGTACCCGCTG TTCTACCTGCGGTATTCCCTGTTCGCTGTCCTGTACCCGACCGGAATCGC GGGCGAGGTCATGACAATGCTGGCCGGCCTCCCGGACCTCAAAGTAGGTG TTTCAGCTTTTCATTGCATGCAGTCTCGTTCTGTTGTCCTCCCGTGCTTC ATGTTTCTACCCGGGCTCGGAGTAGTAGTGGTAACGGTAGTAGTAGTGAC AGAAGTAGTGGCACTACCTGTAGTATTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13681:1002..2029+

>mRNA_Ecto-sp13_S_contig13681.2899.1 ID=mRNA_Ecto-sp13_S_contig13681.2899.1|Name=mRNA_Ecto-sp13_S_contig13681.2899.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13681:1002..2029+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGGAGTGGTCCGCTCCCCTTGGTTGACGACCCTCATGCAGGTGAG
CTCGAGGATCGTCCTGGTGTGGGGCTTCATGTGGGCGGTACCGTCAACCC
AGGGGCAGCTGGGCTCCATGCTGTGCATCACGAGCTGGGCGTGCGTCGAA
ATCCCGAGGTACCTGTTCTACACGTTCGGCGTGCTGAAAAGCTCCCCGTA
CCCGCTGTTCTACCTGCGGTATTCCCTGTTCGCTGTCCTGTACCCGACCG
GAATCGCGGGCGAGGTCATGACAATGCTGGCCGGCCTCCCGGACCTCAAA
GTAGGTGTTTCAGCTTTTCATTGCATGCAGTCTCGTTCTGTTGTCCTCCC
GTGCTTCATGTTTCTACCCGGGCTCGGAGTAGTAGTGGTAACGGTAGTAG
TAGTGACAGAAGTAGTGGCACTACCTGTAGTATTT
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