mRNA_Ecto-sp13_S_contig13669.2892.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13669.2892.1
Unique NamemRNA_Ecto-sp13_S_contig13669.2892.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13669.2892.1 vs. uniprot
Match: D7FWZ0_ECTSI (PUM-HD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWZ0_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 1.010e-66
Identity = 139/147 (94.56%), Postives = 140/147 (95.24%), Query Frame = 1 
Query:  118 MGTLSLGGG-TPGGAAAGGRKSLPYSGXXXXXXXXXXXXXXXXXXNVSSHHMMDGSRGAANASGAGIGLHAGGMMPPSPYNGSQMSPYGAPQQMPQAALMGGMPPLTPELHAGSTMGYQLQDARHLPQLPPPDPRYDTRMQGDQQQR 555
            MGTLSLGGG  PGGAAAGGRKSLPY  XXXXXXXXXXXXXXXXXX+ SSHHMMDGSRGAA ASGAGIGLHAGGMMPPSPYNGSQMSPYGAPQQMPQAALMGGMPPLTPELHAGSTMGYQL DARHLPQLPPPDPRYDTRMQGDQQQR
Sbjct:    1 MGTLSLGGGGVPGGAAAGGRKSLPYXXXXXXXXXXXXXXXXXXXXSGSSHHMMDGSRGAATASGAGIGLHAGGMMPPSPYNGSQMSPYGAPQQMPQAALMGGMPPLTPELHAGSTMGYQL-DARHLPQLPPPDPRYDTRMQGDQQQR 146
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BLAST of mRNA_Ecto-sp13_S_contig13669.2892.1 vs. uniprot
Match: A0A6H5KS31_9PHAE (PUM-HD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS31_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 2.700e-49
Identity = 92/95 (96.84%), Postives = 92/95 (96.84%), Query Frame = 1 
Query:  268 MMDGSRGAANASGAGIGLHAGGMMPPSPYNGSQMSPYGAPQQMPQAALMGGMPPLTPELHAGSTMGYQLQDARHLPQLPPPDPRYDTRMQGDQQQ 552
            MMDG RGAA ASGAGIGLHAGGMMPPSPYNGSQMSPYGAPQQMPQAALMGGMPPLTPELHAGSTMGYQL DARHLPQLPPPDPRYDTRMQGDQQQ
Sbjct:    1 MMDGLRGAAIASGAGIGLHAGGMMPPSPYNGSQMSPYGAPQQMPQAALMGGMPPLTPELHAGSTMGYQL-DARHLPQLPPPDPRYDTRMQGDQQQ 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13669.2892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWZ0_ECTSI1.010e-6694.56PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KS31_9PHAE2.700e-4996.84PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13669contigEcto-sp13_S_contig13669:1194..2224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score225.7
Seed ortholog evalue1.8e-56
Seed eggNOG ortholog2880.D7FWZ0
Preferred namePUF2
Model size558
KEGG koko:K17943,ko:K17944
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000288,GO:0000956,GO:0001101,GO:0002252,GO:0002376,GO:0003006,GO:0003008,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0003730,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005829,GO:0005886,GO:0006139,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0006810,GO:0006884,GO:0006950,GO:0006952,GO:0006970,GO:0007049,GO:0007097,GO:0007276,GO:0007281,GO:0007338,GO:0007346,GO:0007610,GO:0007611,GO:0007612,GO:0007635,GO:0008150,GO:0008152,GO:0008285,GO:0008306,GO:0008355,GO:0008361,GO:0009056,GO:0009057,GO:0009414,GO:0009415,GO:0009566,GO:0009605,GO:0009607,GO:0009615,GO:0009628,GO:0009651,GO:0009819,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0009992,GO:0010035,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0017148,GO:0019219,GO:0019222,GO:0019439,GO:0019725,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030104,GO:0030154,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032991,GO:0034248,GO:0034249,GO:0034641,GO:0034655,GO:0035046,GO:0035770,GO:0036464,GO:0040019,GO:0042048,GO:0042127,GO:0042221,GO:0042592,GO:0043073,GO:0043170,GO:0043186,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043487,GO:0043488,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045495,GO:0045786,GO:0045787,GO:0045930,GO:0045935,GO:0045995,GO:0046483,GO:0046700,GO:0046907,GO:0048468,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0048878,GO:0050779,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051094,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051445,GO:0051446,GO:0051607,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0051704,GO:0051707,GO:0051726,GO:0051728,GO:0051729,GO:0055082,GO:0060184,GO:0060255,GO:0060293,GO:0061013,GO:0061014,GO:0061157,GO:0061158,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090066,GO:0090304,GO:0097159,GO:0098542,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901700,GO:1903311,GO:1903313,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2000241,GO:2000243
Exons2
EggNOG free text desc.mRNA binding
EggNOG OGsCOG5099@1,KOG1488@2759
Cds size555
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462729.7544758-CDS-Ecto-sp13_S_contig13669:1194..12751681462729.7544758-CDS-Ecto-sp13_S_contig13669:1194..1275Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13669 1195..1275 -
1681462729.7682822-CDS-Ecto-sp13_S_contig13669:1750..22241681462729.7682822-CDS-Ecto-sp13_S_contig13669:1750..2224Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13669 1751..2224 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13669.2892.1prot_Ecto-sp13_S_contig13669.2892.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13669 1195..2224 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13669.2892.1

>prot_Ecto-sp13_S_contig13669.2892.1 ID=prot_Ecto-sp13_S_contig13669.2892.1|Name=mRNA_Ecto-sp13_S_contig13669.2892.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=185bp
RYGHGPPGDVNKPHSQFSVTHHREGYGGAAGGDGDIVGAMGTLSLGGGTP
GGAAAGGRKSLPYSGGAGGSSRLDPYGGSGGGNNVSSHHMMDGSRGAANA
SGAGIGLHAGGMMPPSPYNGSQMSPYGAPQQMPQAALMGGMPPLTPELHA
GSTMGYQLQDARHLPQLPPPDPRYDTRMQGDQQQR
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mRNA from alignment at Ecto-sp13_S_contig13669:1194..2224-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13669.2892.1 ID=mRNA_Ecto-sp13_S_contig13669.2892.1|Name=mRNA_Ecto-sp13_S_contig13669.2892.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1031bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13669:1194..2224- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTACGGCCACGGGCCCCCCGGCGACGTCAACAAGCCGCATTCGCAGTT
CTCCGTGACTCATCACCGAGAAGGGTACGGTGGTGCCGCCGGGGGCGACG
GCGATATCGTCGGGGCCATGGGTACCCTCTCCCTCGGCGGCGGAACCCCT
GGGGGGGCCGCAGCTGGGGGAAGGAAGAGCTTGCCGTACAGCGGGGGAGC
GGGCGGGAGCAGCAGGTTAGACCCCTACGGCGGTAGCGGCGGCGGGAACA
ACGTCAGCAGCCACCACATGATGGACGGCTCGAGAGGGGCAGCTAATGCC
AGCGGCGCCGGCATCGGGCTTCACGCCGGGGGGATGATGCCTCCGTCCCC
GTACAACGGCTCGCAGATGTCGCCCTACGGGGCCCCCCAGCAGATGCCCC
AGGCGGCGCTCATGGGGGGCATGCCGCCCCTCACACCAGAGCTGCACGCG
GGGAGTACGATGGGGTATCAACTGGTGAGCGTCGGGTCACACATTGACAG
AGCGCGCGCGGTTCACAGATGGCGCATTGCAATAGGCTTAAGAAATCTCT
GGAAAAGGGCGGCGCTCAGCGACGTCACTCCCTGACGAGTGACCATGACC
TCGTTGTTACCCGAACCACTCACTGCGCTCTCACGGTTTTTCATTAAGAG
CCGGCCGTTTTTGGAGTTTGCGTTCTTCCATGTAAAGACTGTGTGATCGC
TTTCCTTTGTGCGTATGTACGATGGTGATTTACCACGTAAACATTGGAAA
TAGAGGGGCCGATGTGACGCAAACATGAGTATCCCAATGGTCGCTACATT
TACAAAGCAGGGTAGTACTTACGTTTTGACGCAACAGAGTGCGGTGATAA
TGAAGTGGTACATATGGGGTCACGATGTATCGTCATGTGTGTCATGTTGA
CTCTTATTGTTTTCATTTTTGCCGGACGTCCCCCATTTCTCTTTGCAAGC
AGGATGCTCGGCACTTGCCCCAGCTTCCACCCCCAGACCCTCGATACGAC
ACCAGGATGCAGGGGGACCAGCAGCAGCGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13669:1194..2224-

>mRNA_Ecto-sp13_S_contig13669.2892.1 ID=mRNA_Ecto-sp13_S_contig13669.2892.1|Name=mRNA_Ecto-sp13_S_contig13669.2892.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=555bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13669:1194..2224- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTACGGCCACGGGCCCCCCGGCGACGTCAACAAGCCGCATTCGCAGTT
CTCCGTGACTCATCACCGAGAAGGGTACGGTGGTGCCGCCGGGGGCGACG
GCGATATCGTCGGGGCCATGGGTACCCTCTCCCTCGGCGGCGGAACCCCT
GGGGGGGCCGCAGCTGGGGGAAGGAAGAGCTTGCCGTACAGCGGGGGAGC
GGGCGGGAGCAGCAGGTTAGACCCCTACGGCGGTAGCGGCGGCGGGAACA
ACGTCAGCAGCCACCACATGATGGACGGCTCGAGAGGGGCAGCTAATGCC
AGCGGCGCCGGCATCGGGCTTCACGCCGGGGGGATGATGCCTCCGTCCCC
GTACAACGGCTCGCAGATGTCGCCCTACGGGGCCCCCCAGCAGATGCCCC
AGGCGGCGCTCATGGGGGGCATGCCGCCCCTCACACCAGAGCTGCACGCG
GGGAGTACGATGGGGTATCAACTGCAGGATGCTCGGCACTTGCCCCAGCT
TCCACCCCCAGACCCTCGATACGACACCAGGATGCAGGGGGACCAGCAGC
AGCGC
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