prot_Ecto-sp13_S_contig13669.2892.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13669.2892.1
Unique Nameprot_Ecto-sp13_S_contig13669.2892.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length185
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13669.2892.1 vs. uniprot
Match: D7FWZ0_ECTSI (PUM-HD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWZ0_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 1.010e-66
Identity = 139/147 (94.56%), Postives = 140/147 (95.24%), Query Frame = 0 
Query:   40 MGTLSLGGG-TPGGAAAGGRKSLPYSGXXXXXXXXXXXXXXXXXXNVSSHHMMDGSRGAANASGAGIGLHAGGMMPPSPYNGSQMSPYGAPQQMPQAALMGGMPPLTPELHAGSTMGYQLQDARHLPQLPPPDPRYDTRMQGDQQQR 185
            MGTLSLGGG  PGGAAAGGRKSLPY  XXXXXXXXXXXXXXXXXX+ SSHHMMDGSRGAA ASGAGIGLHAGGMMPPSPYNGSQMSPYGAPQQMPQAALMGGMPPLTPELHAGSTMGYQL DARHLPQLPPPDPRYDTRMQGDQQQR
Sbjct:    1 MGTLSLGGGGVPGGAAAGGRKSLPYXXXXXXXXXXXXXXXXXXXXSGSSHHMMDGSRGAATASGAGIGLHAGGMMPPSPYNGSQMSPYGAPQQMPQAALMGGMPPLTPELHAGSTMGYQL-DARHLPQLPPPDPRYDTRMQGDQQQR 146
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BLAST of mRNA_Ecto-sp13_S_contig13669.2892.1 vs. uniprot
Match: A0A6H5KS31_9PHAE (PUM-HD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS31_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 2.700e-49
Identity = 92/95 (96.84%), Postives = 92/95 (96.84%), Query Frame = 0 
Query:   90 MMDGSRGAANASGAGIGLHAGGMMPPSPYNGSQMSPYGAPQQMPQAALMGGMPPLTPELHAGSTMGYQLQDARHLPQLPPPDPRYDTRMQGDQQQ 184
            MMDG RGAA ASGAGIGLHAGGMMPPSPYNGSQMSPYGAPQQMPQAALMGGMPPLTPELHAGSTMGYQL DARHLPQLPPPDPRYDTRMQGDQQQ
Sbjct:    1 MMDGLRGAAIASGAGIGLHAGGMMPPSPYNGSQMSPYGAPQQMPQAALMGGMPPLTPELHAGSTMGYQL-DARHLPQLPPPDPRYDTRMQGDQQQ 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13669.2892.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWZ0_ECTSI1.010e-6694.56PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KS31_9PHAE2.700e-4996.84PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13669contigEcto-sp13_S_contig13669:1195..2224 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13669.2892.1mRNA_Ecto-sp13_S_contig13669.2892.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13669 1194..2224 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13669.2892.1 ID=prot_Ecto-sp13_S_contig13669.2892.1|Name=mRNA_Ecto-sp13_S_contig13669.2892.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=185bp
RYGHGPPGDVNKPHSQFSVTHHREGYGGAAGGDGDIVGAMGTLSLGGGTP
GGAAAGGRKSLPYSGGAGGSSRLDPYGGSGGGNNVSSHHMMDGSRGAANA
SGAGIGLHAGGMMPPSPYNGSQMSPYGAPQQMPQAALMGGMPPLTPELHA
GSTMGYQLQDARHLPQLPPPDPRYDTRMQGDQQQR
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