mRNA_Ecto-sp13_S_contig13659.2885.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13659.2885.1
Unique NamemRNA_Ecto-sp13_S_contig13659.2885.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13659.2885.1 vs. uniprot
Match: D8LBK9_ECTSI (OmpA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK9_ECTSI)

HSP 1 Score: 625 bits (1612), Expect = 1.200e-202
Identity = 383/448 (85.49%), Postives = 386/448 (86.16%), Query Frame = 1
Query:    1 RASDLAGNVAATSYFDWTVDTNVPDTVVVACPSSVASSPLATFKILDTVGAEQDEGHFEYSRLDPVDDAAVWATTSNTTLEFLGLQDGTHVLTVRARETLAEGGSSDQVPEVVTWEVDTECPDTTFVVLPEVVTHLTSTVLVVEGGPDAASFEYALDPIETNT--DNDHDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVVWQQGDSSGVIHLYDLEEGRHEIRVRAVDSAGNADPSPATYSWIVDRAGVYGHPSMVTDVVAEGGNKQAFVQWSAAADDGGGELTKYVVIASTAYADINVEAITSVHATEDVEEGEGEAGQDEAAGGVAGGGGGVLPTEATVEGLTNGLVYSFQVVAANAFGYSTRSLPSNKVVTHDPADPCGLVTCGDHGSCFVQRSQSNALRGYCVCHPG 1338
            RASDLAGNVAATSYFDWTVDTNVPDTVVVACPSSVASSP+ATFKILDTVGAEQDEGHFEY RLDP+DD A WATTSNTTLEFLGLQDGTH LTVRARETLAEGGSSDQVPEVVTWEVDTECPDTTFVVLPEVVTHLTSTVLVVEGGPDAASFEYALDPIETNT  DNDHD     XXXXXXXX     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       AGVVWQQGDSSGVIHLYDLEEGRHEIRVRAVDSAGNADPSPATYSWIVDRAGVYGHPSMVTDVVAEGGNKQA VQWSAAADDGGG+LTKYVVIASTAYADINVEA                                      TVEGLTNGLVYSFQVVAANAFGYSTRSLPSNKVVTHDPADPCGLVTCGDHGSCFVQRSQSNALRGYCVCHPG
Sbjct: 1477 RASDLAGNVAATSYFDWTVDTNVPDTVVVACPSSVASSPMATFKILDTVGAEQDEGHFEY-RLDPLDDDAAWATTSNTTLEFLGLQDGTHALTVRARETLAEGGSSDQVPEVVTWEVDTECPDTTFVVLPEVVTHLTSTVLVVEGGPDAASFEYALDPIETNTNTDNDHD-----XXXXXXXXAEEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGEGEEAGVVWQQGDSSGVIHLYDLEEGRHEIRVRAVDSAGNADPSPATYSWIVDRAGVYGHPSMVTDVVAEGGNKQAIVQWSAAADDGGGDLTKYVVIASTAYADINVEA--------------------------------------TVEGLTNGLVYSFQVVAANAFGYSTRSLPSNKVVTHDPADPCGLVTCGDHGSCFVQRSQSNALRGYCVCHPG 1880          
BLAST of mRNA_Ecto-sp13_S_contig13659.2885.1 vs. uniprot
Match: A0A6H5K857_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K857_9PHAE)

HSP 1 Score: 482 bits (1241), Expect = 1.110e-150
Identity = 302/338 (89.35%), Postives = 306/338 (90.53%), Query Frame = 1
Query:    1 RASDLAGNVAATSYFDWTVDTNVPDTVVVACPSSVASSPLATFKILDTVGAEQDEGHFEYSRLDPVDDAAVWATTSNTTLEFLGLQDGTHVLTVRARETLAEGGSSDQVPEVVTWEVDTECPDTTFVVLPEVVTHLTSTVLVVEGGPDAASFEYALDPIETNTDNDHDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVVWQQGDSSGVIHLYDLEEGRHEIRVRAVDSAGNADPSPATYSWIVDRAGVYGHPSMVTDVVAEGGNKQAFVQWSAAADDGGGELTKYVVIASTAYADINVEAIT 1014
            RASDLAGNVAATSYFDWTVDTNVPDTVVVACPSSVASSPLATFKILDTVGAEQDEGHFEY RLDP+DD   W TTSNTTLEF+GLQDGTH LTVRARETLAEGGSSDQVPEVVTWEVDTECPDTTFVVLPEVVTHLTSTVLVVEGGPDAASFEY LDPIETN DN               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        AGVVW+QGDSSGVIHLYDLEEGRHEIRVRAVDSAGNADPSPATYSWIVDRA VYGHPSMVTDVVAEGGNKQAFVQWSAAADDGGG+LTKYVVIASTAYADINVEAIT
Sbjct: 1283 RASDLAGNVAATSYFDWTVDTNVPDTVVVACPSSVASSPLATFKILDTVGAEQDEGHFEY-RLDPLDDDTAWTTTSNTTLEFMGLQDGTHALTVRARETLAEGGSSDQVPEVVTWEVDTECPDTTFVVLPEVVTHLTSTVLVVEGGPDAASFEYTLDPIETNADN---------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEGKGEEAGVVWEQGDSSGVIHLYDLEEGRHEIRVRAVDSAGNADPSPATYSWIVDRADVYGHPSMVTDVVAEGGNKQAFVQWSAAADDGGGDLTKYVVIASTAYADINVEAIT 1604          
BLAST of mRNA_Ecto-sp13_S_contig13659.2885.1 vs. uniprot
Match: A0A835Z7B5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7B5_9STRA)

HSP 1 Score: 133 bits (334), Expect = 5.390e-33
Identity = 94/261 (36.02%), Postives = 118/261 (45.21%), Query Frame = 1
Query:  133 ILDTVGAEQDEG-HFEYSRLDPVDDAAVWATTSNTTLEFLGLQDGTHVLTVRARETLAEGGSSDQVPEVVTWEVDTECPDTTFVVLPEVVTHLTSTVLVVEGGPDAASFEYALDPIETNTDNDHDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVV--W-QQGDSSGVIHLYDLEEGRHEIRVRAVDSAGNADPSPATYSWIVDRAGVYGHPSMVTDVVAEGGNK 903
            +LDTVG     G H+E+     +D+A  W   +   +E  GL +G+H +T+RA         +D VP    W VDT  PDT+ VV P  VTHL S +LV  G    A+FEY LD       N                                                                  AGV   W    D++ V+HLYDL EG H +RVRAVD+AGNAD SPA + WIVDRAGVYG PSM +DVVA GG++
Sbjct:    1 LLDTVGGGSGGGGHYEWR----LDEAQHWRRAAQPLIEVRGLSEGSHSVTIRAVRGGXXXXXADAVPVRYAWTVDTRAPDTSIVVYPSTVTHLRSAILVFSGSEPGATFEYRLDGGAETALN-------------------------------------------------------VTAAAAAAAPAAGVAETWLAPPDNTSVLHLYDLAEGAHVLRVRAVDAAGNADASPAVHKWIVDRAGVYGPPSMPSDVVAGGGDQ 202          
BLAST of mRNA_Ecto-sp13_S_contig13659.2885.1 vs. uniprot
Match: UPI001F082607 (OmpA family protein n=1 Tax=Myxococcus vastator TaxID=2709664 RepID=UPI001F082607)

HSP 1 Score: 90.9 bits (224), Expect = 1.200e-15
Identity = 83/283 (29.33%), Postives = 106/283 (37.46%), Query Frame = 1
Query:    1 RASDLAGNVAAT-SYFDWTVDTNVPDTVVVACPSSVASSPLATFKILDTVGAEQDEGHFEYSRLDPVDDAAVWATTSNTTLEFLGLQDGTHVLTVRARETLAEGGSSDQVPEVVTWEVDTECPDTTFVVLPEVVTHLTSTVLVVEGGPDAASFEYALD--PIETNTDNDHDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVVWQQGDSSGVIHLYDLEEGRHEIRVRAVDSAGNADPSPATYSWIVD 840
            RA D AGNV  T + ++WTVDT  PDT +V+ P +  +S  ATF        + +E    Y     +D A V   T+  T  F GL DG+H L V A +   E G++D  P   TW VD   PDTT V  P  VT+ TS          + ++E +LD  P    TD                                                                                     L EG H + VRAVD AGN DP+PATY+W VD
Sbjct:  309 RAVDSAGNVDPTPAEYEWTVDTTAPDTAIVSAPPATTTSSSATFDF------DSNESPVTYQC--SLDGAPVVPCTNPVT--FTGLADGSHTLVVFAVD---EAGNADVTPATYTWTVDATAPDTTIVSGPPAVTNSTSATFDFSSNESSVTYECSLDGGPFVPCTDPQT-------------------------------------------------------------------------------FTGLAEGNHTLEVRAVDVAGNVDPTPATYAWTVD 499          
BLAST of mRNA_Ecto-sp13_S_contig13659.2885.1 vs. uniprot
Match: UPI001F50C2B8 (Ig-like domain-containing protein n=2 Tax=Pyxidicoccus sp. SCPEA002 TaxID=2813578 RepID=UPI001F50C2B8)

HSP 1 Score: 90.5 bits (223), Expect = 1.790e-15
Identity = 86/306 (28.10%), Postives = 115/306 (37.58%), Query Frame = 1
Query:    1 RASDLAGNVAAT-SYFDWTVDTNVPDTVVVACPSSVASSPLATFKILDTVGAEQDEGHFEYSRLDPVDDAAVWATTSNTTLEFLGLQDGTHVLTVRARETLAEGGSSDQVPEVVTWEVDTECPDTTFVVLPEVVTHLTSTVLVVEGGPDAASFEYALDPIETNTDNDHDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVVWQQGDSSGV--------IHLYDLEEGRHEIRVRAVDSAGNADPSPATYSWIVDRAG----VYGHPSMVTD 879
            RA D AGNV  T + + WTVDT+ PDT +V+ P+   +S  ATF          +E    Y     +D AA  A T   T  F GL DG+H L+VRA +     G+ D  P   TW VD   PDTT V  P  VT+ T+            ++E +LD        D                                                                    V  Q    G         +    L +G H + VRAVD+AGN DP+PAT++W VDR      +   P++VT+
Sbjct: 1134 RAVDSAGNVDPTPATYTWTVDTSPPDTTIVSGPTGSTTSTSATFDF------SSNESPVTYQC--SLDGAAFTACTDPVT--FTGLADGSHTLSVRAVDA---AGNVDPTPATRTWTVDRTAPDTTIVSGPATVTNATTATFDFTSNESPVTYECSLDGAAFTACTDPVTFSGLADGGHTLSVRARDAAGNVDPTPATYAWTVDRTAPDTTIVSGPPALTSSTSATFDFSSNESPVTYQCSLDGAAFAACTDPVTFSGLADGNHTLSVRAVDAAGNVDPTPATHAWTVDRTAPDTTIVSGPALVTN 1426          
BLAST of mRNA_Ecto-sp13_S_contig13659.2885.1 vs. uniprot
Match: A0A0G2ZEH0_9DELT (Ig-like protein group 3 n=1 Tax=Archangium gephyra TaxID=48 RepID=A0A0G2ZEH0_9DELT)

HSP 1 Score: 89.7 bits (221), Expect = 2.700e-15
Identity = 82/290 (28.28%), Postives = 114/290 (39.31%), Query Frame = 1
Query:    1 RASDLAGNVAAT-SYFDWTVDTNVPDTVVVACPSSVASSPLATFKILDTVGAEQDEGHFEYSRLDPVDDAAVWATTSNTTLEFLGLQDGTHVLTVRARETLAEGGSSDQVPEVVTWEVDTECPDTTFVVLPEVVTHLTSTVLVVEGGPDAASFEYALDPIETNTDNDHDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVVWQQG-------DSSGVIHLYDLEEGRHEIRVRAVDSAGNADPSPATYSWIVDRA 846
            RA D+AGNV  T + + WTVD  VPDT +V+ P ++ +SP ATF      GA         + +  +D A  ++  S+    F  L DG H L V A +     G+ D  P V TW VD   PDTT V  P  +T++TS           A+FE +LD        D +                                                               AG  ++           +G +    L +G H  +VRAVD+AGN DP+PA+Y+W VD A
Sbjct:  779 RARDVAGNVDPTPASYTWTVDLTVPDTTIVSGPPALTNSPSATFDFSSEAGA---------TFMCRLDTALTFSPCSDPET-FTALGDGAHRLEVSAVDA---AGNMDPTPAVYTWTVDLTPPDTTIVSGPPSLTNVTSATFDFSSEA-GATFECSLDGAAFTACADPETFTGLTEKAYTLQVRARDAAGNVDPTPASYTWTVDFSAPETTLVSNPPNPSNSPDATFDFSSEAGATFECSLDGAPFTPCTGPVSFTGLGDGSHTFQVRAVDAAGNVDPTPASYTWTVDAA 1054          
BLAST of mRNA_Ecto-sp13_S_contig13659.2885.1 vs. uniprot
Match: UPI001F0823DD (Ig-like domain-containing protein n=1 Tax=Pyxidicoccus trucidator TaxID=2709662 RepID=UPI001F0823DD)

HSP 1 Score: 88.6 bits (218), Expect = 7.300e-15
Identity = 82/289 (28.37%), Postives = 110/289 (38.06%), Query Frame = 1
Query:    1 RASDLAGNVAAT-SYFDWTVDTNVPDTVVVACPSSVASSPLATFKILDTVGAEQDEGHFEYSRLDPVDDAAVWATTSNTTLEFLGLQDGTHVLTVRARETLAEGGSSDQVPEVVTWEVDTECPDTTFVVLPEVVTHLTSTVLVVEGGPDAASFEYALDPIETNTDNDHDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVVWQQGDSSGV--------IHLYDLEEGRHEIRVRAVDSAGNADPSPATYSWIVD 840
            RA D AGNV  T +   WTVDT+ PDT +V+ P++V S+  ATF       + +    +E S    +D AA  A T   T  F GL +G H L VRAR+     G+ D  P    W VDT  PDTT V  P  +T+ T+            +++ +LD        D                                                                    V  Q    G         + L ++  G H + VRAVD+AGN DP+PATY+W VD
Sbjct:  972 RAVDAAGNVDPTPATRSWTVDTSAPDTTIVSGPAAVTSATTATFDF----SSNESPVTYECS----LDGAAFVACTDPVT--FSGLANGNHTLAVRARDA---AGNVDPTPATHAWTVDTTVPDTTIVSGPPALTNSTTATFDFSSNESPVTYQCSLDGAAFVACTDPRTFTGLANGNHTLAVRAVDAAGNVDPTPATHAWTVDATVPDTTIVSGPALVTNATTATFDFSSNESPVTYQCSVDGAAFAACTDPLTLSNVSAGNHTLAVRAVDAAGNVDPTPATYAWTVD 1247          
BLAST of mRNA_Ecto-sp13_S_contig13659.2885.1 vs. uniprot
Match: UPI001F08862D (Ig-like domain-containing protein n=1 Tax=Pyxidicoccus caerfyrddinensis TaxID=2709663 RepID=UPI001F08862D)

HSP 1 Score: 87.8 bits (216), Expect = 1.320e-14
Identity = 83/290 (28.62%), Postives = 109/290 (37.59%), Query Frame = 1
Query:    1 RASDLAGNVAAT-SYFDWTVDTNVPDTVVVACPSSVASSPLATFKILDTVGAEQDEGHFEYSRLDPVDDAAVWATTSNTTLEFLGLQDGTHVLTVRARETLAEGGSSDQVPEVVTWEVDTECPDTTFVVLPEVVTHLTSTVLVVEGGPDAASFEYALDPIETNTDNDHDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVVWQQGDSSGV--------IHLYDLEEGRHEIRVRAVDSAGNADPSPATYSWIVDR 843
            RA D AGNV  T +   WTVDT+ PDT +V+ P++V ++  ATF       + +    +E S    +D AA  A T   T  F GL  G H L+VRAR+     G+ D  P    W VDT  PDTT V  P  +T+  S            +++ +LD        D                                                                    V  Q    G         +    L EG H + VRAVD+AGN DP+PATY+W VDR
Sbjct: 1192 RAVDAAGNVDPTPATRAWTVDTSAPDTTIVSGPATVTNATTATFDFT----SNESPVTYECS----LDGAAFVACTDPVT--FSGLAQGNHTLSVRARDA---AGNVDASPATYAWTVDTTAPDTTIVSGPPALTNSNSATFDFSSNESPVTYQCSLDGAAFVACTDPRTYTGLADGNHTLAVRAVDAAGNVDASPATHAWTVDTTPPNTVIDSGPAAQTNATTATFNFSSPDSPVTYQCSLDGAAFTACTDPVTFTGLVEGGHTLAVRAVDAAGNVDPTPATYNWTVDR 1468          
BLAST of mRNA_Ecto-sp13_S_contig13659.2885.1 vs. uniprot
Match: A0A4Y6CFA7_MYXXA (Cell envelope biogenesis protein OmpA n=19 Tax=Proteobacteria TaxID=1224 RepID=A0A4Y6CFA7_MYXXA)

HSP 1 Score: 87.0 bits (214), Expect = 2.260e-14
Identity = 84/283 (29.68%), Postives = 105/283 (37.10%), Query Frame = 1
Query:    1 RASDLAGNVAAT-SYFDWTVDTNVPDTVVVACPSSVASSPLATFKILDTVGAEQDEGHFEYSRLDPVDDAAVWATTSNTTLEFLGLQDGTHVLTVRARETLAEGGSSDQVPEVVTWEVDTECPDTTFVVLPEVVTHLTSTVLVVEGGPDAASFEYALD--PIETNTDNDHDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVVWQQGDSSGVIHLYDLEEGRHEIRVRAVDSAGNADPSPATYSWIVD 840
            RA D AGNV  T + + WTVDT  PDT +V+ PS   +S  ATF          +E    Y     +D A   A +   TL   GL DG H L VRA +     G+ D  P   TW VD   PDTT V  P  VT+ TS            +++ +LD  P  T TD                                                                         Q  ++       L EG H + VRAVD+AGN DP+PATY+W VD
Sbjct:  608 RAVDAAGNVDPTPATYAWTVDTTAPDTTIVSGPSGTTTSSSATFDF------SSNESPVTYQC--SLDGAPFTACSDPQTLT--GLADGEHTLAVRAVDA---AGNEDPTPATRTWTVDATAPDTTIVSGPAAVTNATSATFDFSSNESPVTYQCSLDGAPFATCTD------------------------------------------------------------------------PQSYTA-------LPEGEHTLAVRAVDAAGNMDPTPATYAWTVD 798          
BLAST of mRNA_Ecto-sp13_S_contig13659.2885.1 vs. uniprot
Match: A0A848LS83_9DELT (OmpA family protein n=1 Tax=Pyxidicoccus fallax TaxID=394095 RepID=A0A848LS83_9DELT)

HSP 1 Score: 86.7 bits (213), Expect = 3.060e-14
Identity = 83/290 (28.62%), Postives = 107/290 (36.90%), Query Frame = 1
Query:    1 RASDLAGNVAAT-SYFDWTVDTNVPDTVVVACPSSVASSPLATFKILDTVGAEQDEGHFEYSRLDPVDDAAVWATTSNTTLEFLGLQDGTHVLTVRARETLAEGGSSDQVPEVVTWEVDTECPDTTFVVLPEVVTHLTSTVLVVEGGPDAASFEYALDPIETNTDNDHDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVVWQQGDSSGVI---------HLYDLEEGRHEIRVRAVDSAGNADPSPATYSWIVD 840
            RA D AGNV  T +   WTVDT  PDT +V+ P++V ++  ATF       +      FE S    +D AA  A T   T  F GL +G H L+VRAR+T    G+ D  P    W +D+  PDTT V  P  VT  TS            ++E +LD        D                                                                    V  +    G +             L  G H + VRAVD+AGN DP+PATY+W VD
Sbjct:  502 RAVDAAGNVDPTPATRTWTVDTVAPDTTIVSGPATVTNATSATFDF----SSNDATAPFECS----LDGAAYVACTDPRT--FTGLAEGNHTLSVRARDT---AGNVDATPATYAWTIDSTVPDTTIVSGPSGVTASTSATFDFSSPESPVTYECSLDGATFAACTDPQTFTGLAQGSHTLAVRARDAAGNVDPTPATRTWTVDTVAPDTTFTSTPPTRSNSAVANFDFNSNESPVTYECRLDGAVLFTACADPSSFTGLTNGSHTLEVRAVDAAGNVDPTPATYTWTVD 778          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13659.2885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBK9_ECTSI1.200e-20285.49OmpA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K857_9PHAE1.110e-15089.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z7B5_9STRA5.390e-3336.02Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
UPI001F0826071.200e-1529.33OmpA family protein n=1 Tax=Myxococcus vastator Ta... [more]
UPI001F50C2B81.790e-1528.10Ig-like domain-containing protein n=2 Tax=Pyxidico... [more]
A0A0G2ZEH0_9DELT2.700e-1528.28Ig-like protein group 3 n=1 Tax=Archangium gephyra... [more]
UPI001F0823DD7.300e-1528.37Ig-like domain-containing protein n=1 Tax=Pyxidico... [more]
UPI001F08862D1.320e-1428.62Ig-like domain-containing protein n=1 Tax=Pyxidico... [more]
A0A4Y6CFA7_MYXXA2.260e-1429.68Cell envelope biogenesis protein OmpA n=19 Tax=Pro... [more]
A0A848LS83_9DELT3.060e-1428.62OmpA family protein n=1 Tax=Pyxidicoccus fallax Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13659contigEcto-sp13_S_contig13659:547..4631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score627.5
Seed ortholog evalue4.9e-177
Seed eggNOG ortholog2880.D8LBK9
Model size1342
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.cytoskeletal protein binding
EggNOG OGsKOG0613@1,KOG0613@2759
Cds size1341
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13659.2885.1prot_Ecto-sp13_S_contig13659.2885.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13659 547..4631 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462729.1234803-CDS-Ecto-sp13_S_contig13659:546..6241681462729.1234803-CDS-Ecto-sp13_S_contig13659:546..624Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13659 547..624 +
1681462729.134756-CDS-Ecto-sp13_S_contig13659:869..9731681462729.134756-CDS-Ecto-sp13_S_contig13659:869..973Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13659 870..973 +
1681462729.1435113-CDS-Ecto-sp13_S_contig13659:1501..16431681462729.1435113-CDS-Ecto-sp13_S_contig13659:1501..1643Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13659 1502..1643 +
1681462729.151543-CDS-Ecto-sp13_S_contig13659:2011..24401681462729.151543-CDS-Ecto-sp13_S_contig13659:2011..2440Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13659 2012..2440 +
1681462729.16003-CDS-Ecto-sp13_S_contig13659:2843..29961681462729.16003-CDS-Ecto-sp13_S_contig13659:2843..2996Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13659 2844..2996 +
1681462729.17518-CDS-Ecto-sp13_S_contig13659:3408..37201681462729.17518-CDS-Ecto-sp13_S_contig13659:3408..3720Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13659 3409..3720 +
1681462729.1859367-CDS-Ecto-sp13_S_contig13659:4508..46311681462729.1859367-CDS-Ecto-sp13_S_contig13659:4508..4631Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13659 4509..4631 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13659.2885.1

>prot_Ecto-sp13_S_contig13659.2885.1 ID=prot_Ecto-sp13_S_contig13659.2885.1|Name=mRNA_Ecto-sp13_S_contig13659.2885.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=447bp
RASDLAGNVAATSYFDWTVDTNVPDTVVVACPSSVASSPLATFKILDTVG
AEQDEGHFEYSRLDPVDDAAVWATTSNTTLEFLGLQDGTHVLTVRARETL
AEGGSSDQVPEVVTWEVDTECPDTTFVVLPEVVTHLTSTVLVVEGGPDAA
SFEYALDPIETNTDNDHDDGDDDDDDDDAEEAGSGGVSSGGSSGGGGTAA
SRDSSSGSPSSSSSSSSRTTSGGEGGGGGEEAGVVWQQGDSSGVIHLYDL
EEGRHEIRVRAVDSAGNADPSPATYSWIVDRAGVYGHPSMVTDVVAEGGN
KQAFVQWSAAADDGGGELTKYVVIASTAYADINVEAITSVHATEDVEEGE
GEAGQDEAAGGVAGGGGGVLPTEATVEGLTNGLVYSFQVVAANAFGYSTR
SLPSNKVVTHDPADPCGLVTCGDHGSCFVQRSQSNALRGYCVCHPG*
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mRNA from alignment at Ecto-sp13_S_contig13659:547..4631+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13659.2885.1 ID=mRNA_Ecto-sp13_S_contig13659.2885.1|Name=mRNA_Ecto-sp13_S_contig13659.2885.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4085bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13659:547..4631+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGCTAGCGACCTCGCGGGCAACGTGGCAGCTACTTCATACTTCGATTG GACCGTTGACACCAACGTCCCAGACACGGTGAGTTTGTGCACAGGAGGAG GCCTGCGGCTGTGAGGTGATGTACACACACAAGACTAGCCGATAGGCTGT GTGGTGTTTTGCTAGGCGTCAGTGGTGGTTGTAACAACACGCAGGGTAAA ACATTTGGCAAGTAGTGTGGTGAAATTCCTGGCGCAGGTGTGTTGACCAT TCCAACACTCCTTCCCCGCTGTTGTTGCTGTTGTTGTTGTTGTTGTTGTG TTTGGTTACATGTCAACCAATAGGTGGTCGTAGCGTGCCCGTCGAGCGTG GCTTCGTCTCCTCTGGCCACCTTTAAGATCCTCGACACCGTGGGGGCGGA GCAGGATGAGGGGCACTTCGAATACAGGTATACCTTCTGAGCTCTAGGCA CAAGAGATGACAAGTTCTTCCCGCCATGTCGGCTTGGTTGATTTTGATTG ATGAATTGTTATAGCGGTTCATCCCTCGTAGGATTGAACATAAATAGCAC GTTGCGAACGAATGCTGTTGTAGCACAAAGCAGGTGTGCGATCGAAGGCC CGATTGCTCTGCAACCAAACGAAAGGTTGGCTGCAAATATCAAACAGGGG GGTGTTCTTGGTTGCGTACACAAGCGATGCCTGCAAACCGGTCGCACATC TACCGGTACGTGTGTTATATTTAAGGGGCAGAGCCGAGATCGGAACAGTT TTCAGTGTGAAGACGACAGCAACAACAAGACCTGTGCGCTAGCCCGAGCA CGGTATGTGTAGGTTGCATACTGCATTGCGCTGCGCCTGCCGGTGTCGAC GTGTATATACATGTTTCGTTTCTTATCCCTCGCTTATTTTTGCTGTTGCT GCTGCTGCTGTTGCTGTTGTATATTTCTTTTTTTGTGTGCGATGGTGGGA GAGAGCAGACTGGACCCCGTGGACGACGCCGCCGTTTGGGCCACCACGTC CAACACCACCCTCGAGTTCTTGGGGCTGCAAGACGGCACGCACGTGCTGA CAGTGAGGGCTCGCGAGACCCTGGCGGAAGGAGGTAGCAGCGACCAGGTG AATGAGTGGCCACAGGGGTAGAGCAGTGTTTTTTTTTACCGTATACCGTG CCTTTCTTTGTCGACGTTTTTATGGGGGGGGAGGGGGGGGGGCGTGGTTC ATGGTGCGCGCGTCGTACGGTTGTTTTGTTTTTGTATTACTGCCGCGTTT TTTTGGCGTGTTCTATCGTGTCTCTCTGTCGGTGGTTTTGAACGCATTTA CATTTTCACGTGGTGCGCGTTATGTGATTGTTTTTGTTTTTTCTTCACTG CTCTGGTTATTTTTTGGTGTGTCTTGCGGGGGGGCCGCTCTTTCTCAAGA CACCACACCCCCGCTCGCTCGCTGGTTGGTTTGCCCTGCGCCAACGCCAC GCTGCGCTACGCCAGGTGCCGGAGGTGGTGACCTGGGAGGTGGACACGGA GTGCCCGGACACGACCTTCGTCGTCCTGCCGGAGGTCGTGACCCACCTCA CCAGCACGGTGCTCGTGGTGGAGGGGGGTCCGGACGCGGCATCCTTCGAG TACGCCCTCGACCCCATCGAGACCAACACCGATAACGACCACGACGATGG TGATGACGATGATGATGACGATGATGCCGAGGAGGCCGGCAGCGGTGGCG TGTCGAGCGGGGGCAGCAGTGGCGGGGGTGGGACGGCGGCGAGCCGTGAT TCTTCTTCTGGGTCGCCGTCGTCGTCGTCGTCGTCGTCGTCGAGGACGAC TTCGGGCGGGGAGGGGGGGGGGGGGGGGGAGGAGGCCGGGGTGGTTTGGC AGCAGGGAGATAGCTCGGGCGTGATTCATCTCTACGACTTGGAGGTTCGT GGTTTTGGTGAACGGCGACGGTCGTGGTTTTCGGGTCCGGTGGCGTGTCC CTTTCTTATCTATTTATTCCTTACTAAAACAAACCAAATTCTTCTCTTCC ACGGCTATAAGAAGCCGCGATAGATTAGCAATTAGTAATTCATGCCGTGT GTGTGGGGATTTGTAATAGGCTAATTTTGTTTTTTAACAGCCTGGTGAGT CCGATGCGTGTGTGAGTGTGAGTGTTGGACACACGCTCCCTGTCACTCTT TCTCTCTCTCTCTCTCTCTCCTTTCCCTGACAATTACCATCGCTCTCTTT CCGTCCTTGCTGCTGCTGTTGCTGTTGATGCTGCTGCGTCTTCCTTGTCT TGGTTTCCGGTCGTCCTGTTATCGTCGTGCGCATACACGCCGTGTAGGAG GGACGGCACGAGATCAGGGTGAGGGCTGTGGATTCGGCGGGCAATGCGGA CCCGTCGCCGGCGACGTACAGCTGGATCGTCGACAGAGCGGGTGTGTACG GGCACCCGAGCATGGTGACAGACGTCGTGGCGGAGGGCGGCAACAAGCAG GTGATATAAAACCCTCGAATTCAGCCAAGCGTGCCCGTCTGTACTTCGTG TGTTCCGTGTAGTTGTTCTCTCCTCGTGTTTCGAATATTTTCAATATATC ACATTATTATTTTAATAGTCGATCGTTCGCTCAAATTGATCTCTCTACAC GGGTGACACGAAAAACAAAGGGAGCATCGGGCCGAAATCGAATCCACCAA ATAGTTCGCGAAAATCGATTCCATTTGCTCTCTAGTCCTGGCTAGCCTGA TAGGTGCAATCAATCGAAGTTGAAAGGAATCGTAATGAGAATAGGACAAC TTGTCTACAGCAGCAGCGCATATGTAGAGAATAAAGAACTAAATCAACAA GGATTATGCCGTAGTCTTAGGGCCGTTTGTCCGCACCCCTCCGCATTACT GGCTGGTTTTAGGCGTTCGTGCAGTGGTCCGCCGCTGCCGACGACGGCGG CGGAGAGCTGACCAAGTACGTCGTCATCGCCTCCACCGCCTACGCCGACA TCAATGTCGAGGCCATCACGTCCGTGCACGCGACCGAAGATGTCGAGGAA GGGGAAGGGGAAGCGGGTCAGGACGAGGCGGCCGGCGGTGTGGCGGGGGG GGGGGGGGGGGTGTTGCCGACGGAGGCTACCGTAGAAGGGCTGACGAACG GCCTGGTTTACAGCTTCCAGGTGGTGGCCGCTAATGCCTTCGGGTACAGC ACTCGCAGCCTGCCCTCCAACAAGGTATGGATGGGACGTGATGGGAAGGG ATGGGATGGAATAAGACGGGATGGGATGGGATGGAAGGGACGAGAGGGGA TGGAAGGGACGGGCTGGAATGTCATGGGACACAATGGGACACGATGGAGC ATTCATTTTTTTAGCTAAAAGTGCGCATTGTTTGTCACTTCGTCGCTCTC CCTGCATTCCCCAGCCGCGATGAGTACTGCTTGCACCACATAGTTGTCTC TGATGCTTTTACCTTTCGGGTACTAGATTAAGAGCCCATCAAGTTAGTGT TTGTTCAATGGTTTCGCGACAAATTCTCCCGTCTTTTTTTCGTCCATCAG TCGCTCGCAGTTGTTCCGCCTTCGTTCTTACCGAAGGGCTGGTCCGTAAA TTACGAGACCCGATGCAGTAAGACACAGAGGAATCGTAGTACGAGATTTC GATTCTGAAGGTTGGACTATTGACCATATGGCGAGAAGGCAGAGTCGCGT ATACATATCCTTCGACGACGATGGATGGGCGATGGATGTCACAGCAGTTA TACACAATATTGTTTTGGTGCTTCTTTTTTTTTGTGGTTTGCCCGTTCAC CCTTACTCATCTCTTCTTGGTGACGCCCTTTCTTCGCATCATGTTTCTTC TTAATTCGCATGTTCTTCGCCCCGCCCTGACATTCGTTAACGCCTCCCGT ATGTGTTTTTTTTGTTCTTGGCCGTCTTTCTGCTGCTTGCTGCTTGCGGT GTGCGGCCGTTCTCCTTTTGCCTGCGCGAACGAATCCAACCGTGGATTCA TGGCCAACCAAGGTTGTGACGCACGACCCCGCAGACCCTTGCGGCCTGGT GACTTGCGGGGACCACGGGTCGTGCTTCGTGCAGCGCAGCCAGTCCAACG CGCTGAGAGGGTACTGCGTCTGCCACCCAGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13659:547..4631+

>mRNA_Ecto-sp13_S_contig13659.2885.1 ID=mRNA_Ecto-sp13_S_contig13659.2885.1|Name=mRNA_Ecto-sp13_S_contig13659.2885.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1341bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13659:547..4631+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGCTAGCGACCTCGCGGGCAACGTGGCAGCTACTTCATACTTCGATTG
GACCGTTGACACCAACGTCCCAGACACGGTGGTCGTAGCGTGCCCGTCGA
GCGTGGCTTCGTCTCCTCTGGCCACCTTTAAGATCCTCGACACCGTGGGG
GCGGAGCAGGATGAGGGGCACTTCGAATACAGCAGACTGGACCCCGTGGA
CGACGCCGCCGTTTGGGCCACCACGTCCAACACCACCCTCGAGTTCTTGG
GGCTGCAAGACGGCACGCACGTGCTGACAGTGAGGGCTCGCGAGACCCTG
GCGGAAGGAGGTAGCAGCGACCAGGTGCCGGAGGTGGTGACCTGGGAGGT
GGACACGGAGTGCCCGGACACGACCTTCGTCGTCCTGCCGGAGGTCGTGA
CCCACCTCACCAGCACGGTGCTCGTGGTGGAGGGGGGTCCGGACGCGGCA
TCCTTCGAGTACGCCCTCGACCCCATCGAGACCAACACCGATAACGACCA
CGACGATGGTGATGACGATGATGATGACGATGATGCCGAGGAGGCCGGCA
GCGGTGGCGTGTCGAGCGGGGGCAGCAGTGGCGGGGGTGGGACGGCGGCG
AGCCGTGATTCTTCTTCTGGGTCGCCGTCGTCGTCGTCGTCGTCGTCGTC
GAGGACGACTTCGGGCGGGGAGGGGGGGGGGGGGGGGGAGGAGGCCGGGG
TGGTTTGGCAGCAGGGAGATAGCTCGGGCGTGATTCATCTCTACGACTTG
GAGGAGGGACGGCACGAGATCAGGGTGAGGGCTGTGGATTCGGCGGGCAA
TGCGGACCCGTCGCCGGCGACGTACAGCTGGATCGTCGACAGAGCGGGTG
TGTACGGGCACCCGAGCATGGTGACAGACGTCGTGGCGGAGGGCGGCAAC
AAGCAGGCGTTCGTGCAGTGGTCCGCCGCTGCCGACGACGGCGGCGGAGA
GCTGACCAAGTACGTCGTCATCGCCTCCACCGCCTACGCCGACATCAATG
TCGAGGCCATCACGTCCGTGCACGCGACCGAAGATGTCGAGGAAGGGGAA
GGGGAAGCGGGTCAGGACGAGGCGGCCGGCGGTGTGGCGGGGGGGGGGGG
GGGGGTGTTGCCGACGGAGGCTACCGTAGAAGGGCTGACGAACGGCCTGG
TTTACAGCTTCCAGGTGGTGGCCGCTAATGCCTTCGGGTACAGCACTCGC
AGCCTGCCCTCCAACAAGGTTGTGACGCACGACCCCGCAGACCCTTGCGG
CCTGGTGACTTGCGGGGACCACGGGTCGTGCTTCGTGCAGCGCAGCCAGT
CCAACGCGCTGAGAGGGTACTGCGTCTGCCACCCAGGGTGA
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