mRNA_Ecto-sp13_S_contig13659.2885.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13659.2885.1 vs. uniprot
Match: D8LBK9_ECTSI (OmpA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK9_ECTSI) HSP 1 Score: 625 bits (1612), Expect = 1.200e-202 Identity = 383/448 (85.49%), Postives = 386/448 (86.16%), Query Frame = 1
Query: 1 RASDLAGNVAATSYFDWTVDTNVPDTVVVACPSSVASSPLATFKILDTVGAEQDEGHFEYSRLDPVDDAAVWATTSNTTLEFLGLQDGTHVLTVRARETLAEGGSSDQVPEVVTWEVDTECPDTTFVVLPEVVTHLTSTVLVVEGGPDAASFEYALDPIETNT--DNDHDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVVWQQGDSSGVIHLYDLEEGRHEIRVRAVDSAGNADPSPATYSWIVDRAGVYGHPSMVTDVVAEGGNKQAFVQWSAAADDGGGELTKYVVIASTAYADINVEAITSVHATEDVEEGEGEAGQDEAAGGVAGGGGGVLPTEATVEGLTNGLVYSFQVVAANAFGYSTRSLPSNKVVTHDPADPCGLVTCGDHGSCFVQRSQSNALRGYCVCHPG 1338
RASDLAGNVAATSYFDWTVDTNVPDTVVVACPSSVASSP+ATFKILDTVGAEQDEGHFEY RLDP+DD A WATTSNTTLEFLGLQDGTH LTVRARETLAEGGSSDQVPEVVTWEVDTECPDTTFVVLPEVVTHLTSTVLVVEGGPDAASFEYALDPIETNT DNDHD XXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AGVVWQQGDSSGVIHLYDLEEGRHEIRVRAVDSAGNADPSPATYSWIVDRAGVYGHPSMVTDVVAEGGNKQA VQWSAAADDGGG+LTKYVVIASTAYADINVEA TVEGLTNGLVYSFQVVAANAFGYSTRSLPSNKVVTHDPADPCGLVTCGDHGSCFVQRSQSNALRGYCVCHPG
Sbjct: 1477 RASDLAGNVAATSYFDWTVDTNVPDTVVVACPSSVASSPMATFKILDTVGAEQDEGHFEY-RLDPLDDDAAWATTSNTTLEFLGLQDGTHALTVRARETLAEGGSSDQVPEVVTWEVDTECPDTTFVVLPEVVTHLTSTVLVVEGGPDAASFEYALDPIETNTNTDNDHD-----XXXXXXXXAEEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGEGEEAGVVWQQGDSSGVIHLYDLEEGRHEIRVRAVDSAGNADPSPATYSWIVDRAGVYGHPSMVTDVVAEGGNKQAIVQWSAAADDGGGDLTKYVVIASTAYADINVEA--------------------------------------TVEGLTNGLVYSFQVVAANAFGYSTRSLPSNKVVTHDPADPCGLVTCGDHGSCFVQRSQSNALRGYCVCHPG 1880
BLAST of mRNA_Ecto-sp13_S_contig13659.2885.1 vs. uniprot
Match: A0A6H5K857_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K857_9PHAE) HSP 1 Score: 482 bits (1241), Expect = 1.110e-150 Identity = 302/338 (89.35%), Postives = 306/338 (90.53%), Query Frame = 1
Query: 1 RASDLAGNVAATSYFDWTVDTNVPDTVVVACPSSVASSPLATFKILDTVGAEQDEGHFEYSRLDPVDDAAVWATTSNTTLEFLGLQDGTHVLTVRARETLAEGGSSDQVPEVVTWEVDTECPDTTFVVLPEVVTHLTSTVLVVEGGPDAASFEYALDPIETNTDNDHDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVVWQQGDSSGVIHLYDLEEGRHEIRVRAVDSAGNADPSPATYSWIVDRAGVYGHPSMVTDVVAEGGNKQAFVQWSAAADDGGGELTKYVVIASTAYADINVEAIT 1014
RASDLAGNVAATSYFDWTVDTNVPDTVVVACPSSVASSPLATFKILDTVGAEQDEGHFEY RLDP+DD W TTSNTTLEF+GLQDGTH LTVRARETLAEGGSSDQVPEVVTWEVDTECPDTTFVVLPEVVTHLTSTVLVVEGGPDAASFEY LDPIETN DN XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AGVVW+QGDSSGVIHLYDLEEGRHEIRVRAVDSAGNADPSPATYSWIVDRA VYGHPSMVTDVVAEGGNKQAFVQWSAAADDGGG+LTKYVVIASTAYADINVEAIT
Sbjct: 1283 RASDLAGNVAATSYFDWTVDTNVPDTVVVACPSSVASSPLATFKILDTVGAEQDEGHFEY-RLDPLDDDTAWTTTSNTTLEFMGLQDGTHALTVRARETLAEGGSSDQVPEVVTWEVDTECPDTTFVVLPEVVTHLTSTVLVVEGGPDAASFEYTLDPIETNADN---------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEGKGEEAGVVWEQGDSSGVIHLYDLEEGRHEIRVRAVDSAGNADPSPATYSWIVDRADVYGHPSMVTDVVAEGGNKQAFVQWSAAADDGGGDLTKYVVIASTAYADINVEAIT 1604
BLAST of mRNA_Ecto-sp13_S_contig13659.2885.1 vs. uniprot
Match: A0A835Z7B5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7B5_9STRA) HSP 1 Score: 133 bits (334), Expect = 5.390e-33 Identity = 94/261 (36.02%), Postives = 118/261 (45.21%), Query Frame = 1
Query: 133 ILDTVGAEQDEG-HFEYSRLDPVDDAAVWATTSNTTLEFLGLQDGTHVLTVRARETLAEGGSSDQVPEVVTWEVDTECPDTTFVVLPEVVTHLTSTVLVVEGGPDAASFEYALDPIETNTDNDHDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVV--W-QQGDSSGVIHLYDLEEGRHEIRVRAVDSAGNADPSPATYSWIVDRAGVYGHPSMVTDVVAEGGNK 903
+LDTVG G H+E+ +D+A W + +E GL +G+H +T+RA +D VP W VDT PDT+ VV P VTHL S +LV G A+FEY LD N AGV W D++ V+HLYDL EG H +RVRAVD+AGNAD SPA + WIVDRAGVYG PSM +DVVA GG++
Sbjct: 1 LLDTVGGGSGGGGHYEWR----LDEAQHWRRAAQPLIEVRGLSEGSHSVTIRAVRGGXXXXXADAVPVRYAWTVDTRAPDTSIVVYPSTVTHLRSAILVFSGSEPGATFEYRLDGGAETALN-------------------------------------------------------VTAAAAAAAPAAGVAETWLAPPDNTSVLHLYDLAEGAHVLRVRAVDAAGNADASPAVHKWIVDRAGVYGPPSMPSDVVAGGGDQ 202
BLAST of mRNA_Ecto-sp13_S_contig13659.2885.1 vs. uniprot
Match: UPI001F082607 (OmpA family protein n=1 Tax=Myxococcus vastator TaxID=2709664 RepID=UPI001F082607) HSP 1 Score: 90.9 bits (224), Expect = 1.200e-15 Identity = 83/283 (29.33%), Postives = 106/283 (37.46%), Query Frame = 1
Query: 1 RASDLAGNVAAT-SYFDWTVDTNVPDTVVVACPSSVASSPLATFKILDTVGAEQDEGHFEYSRLDPVDDAAVWATTSNTTLEFLGLQDGTHVLTVRARETLAEGGSSDQVPEVVTWEVDTECPDTTFVVLPEVVTHLTSTVLVVEGGPDAASFEYALD--PIETNTDNDHDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVVWQQGDSSGVIHLYDLEEGRHEIRVRAVDSAGNADPSPATYSWIVD 840
RA D AGNV T + ++WTVDT PDT +V+ P + +S ATF + +E Y +D A V T+ T F GL DG+H L V A + E G++D P TW VD PDTT V P VT+ TS + ++E +LD P TD L EG H + VRAVD AGN DP+PATY+W VD
Sbjct: 309 RAVDSAGNVDPTPAEYEWTVDTTAPDTAIVSAPPATTTSSSATFDF------DSNESPVTYQC--SLDGAPVVPCTNPVT--FTGLADGSHTLVVFAVD---EAGNADVTPATYTWTVDATAPDTTIVSGPPAVTNSTSATFDFSSNESSVTYECSLDGGPFVPCTDPQT-------------------------------------------------------------------------------FTGLAEGNHTLEVRAVDVAGNVDPTPATYAWTVD 499
BLAST of mRNA_Ecto-sp13_S_contig13659.2885.1 vs. uniprot
Match: UPI001F50C2B8 (Ig-like domain-containing protein n=2 Tax=Pyxidicoccus sp. SCPEA002 TaxID=2813578 RepID=UPI001F50C2B8) HSP 1 Score: 90.5 bits (223), Expect = 1.790e-15 Identity = 86/306 (28.10%), Postives = 115/306 (37.58%), Query Frame = 1
Query: 1 RASDLAGNVAAT-SYFDWTVDTNVPDTVVVACPSSVASSPLATFKILDTVGAEQDEGHFEYSRLDPVDDAAVWATTSNTTLEFLGLQDGTHVLTVRARETLAEGGSSDQVPEVVTWEVDTECPDTTFVVLPEVVTHLTSTVLVVEGGPDAASFEYALDPIETNTDNDHDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVVWQQGDSSGV--------IHLYDLEEGRHEIRVRAVDSAGNADPSPATYSWIVDRAG----VYGHPSMVTD 879
RA D AGNV T + + WTVDT+ PDT +V+ P+ +S ATF +E Y +D AA A T T F GL DG+H L+VRA + G+ D P TW VD PDTT V P VT+ T+ ++E +LD D V Q G + L +G H + VRAVD+AGN DP+PAT++W VDR + P++VT+
Sbjct: 1134 RAVDSAGNVDPTPATYTWTVDTSPPDTTIVSGPTGSTTSTSATFDF------SSNESPVTYQC--SLDGAAFTACTDPVT--FTGLADGSHTLSVRAVDA---AGNVDPTPATRTWTVDRTAPDTTIVSGPATVTNATTATFDFTSNESPVTYECSLDGAAFTACTDPVTFSGLADGGHTLSVRARDAAGNVDPTPATYAWTVDRTAPDTTIVSGPPALTSSTSATFDFSSNESPVTYQCSLDGAAFAACTDPVTFSGLADGNHTLSVRAVDAAGNVDPTPATHAWTVDRTAPDTTIVSGPALVTN 1426
BLAST of mRNA_Ecto-sp13_S_contig13659.2885.1 vs. uniprot
Match: A0A0G2ZEH0_9DELT (Ig-like protein group 3 n=1 Tax=Archangium gephyra TaxID=48 RepID=A0A0G2ZEH0_9DELT) HSP 1 Score: 89.7 bits (221), Expect = 2.700e-15 Identity = 82/290 (28.28%), Postives = 114/290 (39.31%), Query Frame = 1
Query: 1 RASDLAGNVAAT-SYFDWTVDTNVPDTVVVACPSSVASSPLATFKILDTVGAEQDEGHFEYSRLDPVDDAAVWATTSNTTLEFLGLQDGTHVLTVRARETLAEGGSSDQVPEVVTWEVDTECPDTTFVVLPEVVTHLTSTVLVVEGGPDAASFEYALDPIETNTDNDHDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVVWQQG-------DSSGVIHLYDLEEGRHEIRVRAVDSAGNADPSPATYSWIVDRA 846
RA D+AGNV T + + WTVD VPDT +V+ P ++ +SP ATF GA + + +D A ++ S+ F L DG H L V A + G+ D P V TW VD PDTT V P +T++TS A+FE +LD D + AG ++ +G + L +G H +VRAVD+AGN DP+PA+Y+W VD A
Sbjct: 779 RARDVAGNVDPTPASYTWTVDLTVPDTTIVSGPPALTNSPSATFDFSSEAGA---------TFMCRLDTALTFSPCSDPET-FTALGDGAHRLEVSAVDA---AGNMDPTPAVYTWTVDLTPPDTTIVSGPPSLTNVTSATFDFSSEA-GATFECSLDGAAFTACADPETFTGLTEKAYTLQVRARDAAGNVDPTPASYTWTVDFSAPETTLVSNPPNPSNSPDATFDFSSEAGATFECSLDGAPFTPCTGPVSFTGLGDGSHTFQVRAVDAAGNVDPTPASYTWTVDAA 1054
BLAST of mRNA_Ecto-sp13_S_contig13659.2885.1 vs. uniprot
Match: UPI001F0823DD (Ig-like domain-containing protein n=1 Tax=Pyxidicoccus trucidator TaxID=2709662 RepID=UPI001F0823DD) HSP 1 Score: 88.6 bits (218), Expect = 7.300e-15 Identity = 82/289 (28.37%), Postives = 110/289 (38.06%), Query Frame = 1
Query: 1 RASDLAGNVAAT-SYFDWTVDTNVPDTVVVACPSSVASSPLATFKILDTVGAEQDEGHFEYSRLDPVDDAAVWATTSNTTLEFLGLQDGTHVLTVRARETLAEGGSSDQVPEVVTWEVDTECPDTTFVVLPEVVTHLTSTVLVVEGGPDAASFEYALDPIETNTDNDHDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVVWQQGDSSGV--------IHLYDLEEGRHEIRVRAVDSAGNADPSPATYSWIVD 840
RA D AGNV T + WTVDT+ PDT +V+ P++V S+ ATF + + +E S +D AA A T T F GL +G H L VRAR+ G+ D P W VDT PDTT V P +T+ T+ +++ +LD D V Q G + L ++ G H + VRAVD+AGN DP+PATY+W VD
Sbjct: 972 RAVDAAGNVDPTPATRSWTVDTSAPDTTIVSGPAAVTSATTATFDF----SSNESPVTYECS----LDGAAFVACTDPVT--FSGLANGNHTLAVRARDA---AGNVDPTPATHAWTVDTTVPDTTIVSGPPALTNSTTATFDFSSNESPVTYQCSLDGAAFVACTDPRTFTGLANGNHTLAVRAVDAAGNVDPTPATHAWTVDATVPDTTIVSGPALVTNATTATFDFSSNESPVTYQCSVDGAAFAACTDPLTLSNVSAGNHTLAVRAVDAAGNVDPTPATYAWTVD 1247
BLAST of mRNA_Ecto-sp13_S_contig13659.2885.1 vs. uniprot
Match: UPI001F08862D (Ig-like domain-containing protein n=1 Tax=Pyxidicoccus caerfyrddinensis TaxID=2709663 RepID=UPI001F08862D) HSP 1 Score: 87.8 bits (216), Expect = 1.320e-14 Identity = 83/290 (28.62%), Postives = 109/290 (37.59%), Query Frame = 1
Query: 1 RASDLAGNVAAT-SYFDWTVDTNVPDTVVVACPSSVASSPLATFKILDTVGAEQDEGHFEYSRLDPVDDAAVWATTSNTTLEFLGLQDGTHVLTVRARETLAEGGSSDQVPEVVTWEVDTECPDTTFVVLPEVVTHLTSTVLVVEGGPDAASFEYALDPIETNTDNDHDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVVWQQGDSSGV--------IHLYDLEEGRHEIRVRAVDSAGNADPSPATYSWIVDR 843
RA D AGNV T + WTVDT+ PDT +V+ P++V ++ ATF + + +E S +D AA A T T F GL G H L+VRAR+ G+ D P W VDT PDTT V P +T+ S +++ +LD D V Q G + L EG H + VRAVD+AGN DP+PATY+W VDR
Sbjct: 1192 RAVDAAGNVDPTPATRAWTVDTSAPDTTIVSGPATVTNATTATFDFT----SNESPVTYECS----LDGAAFVACTDPVT--FSGLAQGNHTLSVRARDA---AGNVDASPATYAWTVDTTAPDTTIVSGPPALTNSNSATFDFSSNESPVTYQCSLDGAAFVACTDPRTYTGLADGNHTLAVRAVDAAGNVDASPATHAWTVDTTPPNTVIDSGPAAQTNATTATFNFSSPDSPVTYQCSLDGAAFTACTDPVTFTGLVEGGHTLAVRAVDAAGNVDPTPATYNWTVDR 1468
BLAST of mRNA_Ecto-sp13_S_contig13659.2885.1 vs. uniprot
Match: A0A4Y6CFA7_MYXXA (Cell envelope biogenesis protein OmpA n=19 Tax=Proteobacteria TaxID=1224 RepID=A0A4Y6CFA7_MYXXA) HSP 1 Score: 87.0 bits (214), Expect = 2.260e-14 Identity = 84/283 (29.68%), Postives = 105/283 (37.10%), Query Frame = 1
Query: 1 RASDLAGNVAAT-SYFDWTVDTNVPDTVVVACPSSVASSPLATFKILDTVGAEQDEGHFEYSRLDPVDDAAVWATTSNTTLEFLGLQDGTHVLTVRARETLAEGGSSDQVPEVVTWEVDTECPDTTFVVLPEVVTHLTSTVLVVEGGPDAASFEYALD--PIETNTDNDHDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVVWQQGDSSGVIHLYDLEEGRHEIRVRAVDSAGNADPSPATYSWIVD 840
RA D AGNV T + + WTVDT PDT +V+ PS +S ATF +E Y +D A A + TL GL DG H L VRA + G+ D P TW VD PDTT V P VT+ TS +++ +LD P T TD Q ++ L EG H + VRAVD+AGN DP+PATY+W VD
Sbjct: 608 RAVDAAGNVDPTPATYAWTVDTTAPDTTIVSGPSGTTTSSSATFDF------SSNESPVTYQC--SLDGAPFTACSDPQTLT--GLADGEHTLAVRAVDA---AGNEDPTPATRTWTVDATAPDTTIVSGPAAVTNATSATFDFSSNESPVTYQCSLDGAPFATCTD------------------------------------------------------------------------PQSYTA-------LPEGEHTLAVRAVDAAGNMDPTPATYAWTVD 798
BLAST of mRNA_Ecto-sp13_S_contig13659.2885.1 vs. uniprot
Match: A0A848LS83_9DELT (OmpA family protein n=1 Tax=Pyxidicoccus fallax TaxID=394095 RepID=A0A848LS83_9DELT) HSP 1 Score: 86.7 bits (213), Expect = 3.060e-14 Identity = 83/290 (28.62%), Postives = 107/290 (36.90%), Query Frame = 1
Query: 1 RASDLAGNVAAT-SYFDWTVDTNVPDTVVVACPSSVASSPLATFKILDTVGAEQDEGHFEYSRLDPVDDAAVWATTSNTTLEFLGLQDGTHVLTVRARETLAEGGSSDQVPEVVTWEVDTECPDTTFVVLPEVVTHLTSTVLVVEGGPDAASFEYALDPIETNTDNDHDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVVWQQGDSSGVI---------HLYDLEEGRHEIRVRAVDSAGNADPSPATYSWIVD 840
RA D AGNV T + WTVDT PDT +V+ P++V ++ ATF + FE S +D AA A T T F GL +G H L+VRAR+T G+ D P W +D+ PDTT V P VT TS ++E +LD D V + G + L G H + VRAVD+AGN DP+PATY+W VD
Sbjct: 502 RAVDAAGNVDPTPATRTWTVDTVAPDTTIVSGPATVTNATSATFDF----SSNDATAPFECS----LDGAAYVACTDPRT--FTGLAEGNHTLSVRARDT---AGNVDATPATYAWTIDSTVPDTTIVSGPSGVTASTSATFDFSSPESPVTYECSLDGATFAACTDPQTFTGLAQGSHTLAVRARDAAGNVDPTPATRTWTVDTVAPDTTFTSTPPTRSNSAVANFDFNSNESPVTYECRLDGAVLFTACADPSSFTGLTNGSHTLEVRAVDAAGNVDPTPATYTWTVD 778 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13659.2885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13659.2885.1 >prot_Ecto-sp13_S_contig13659.2885.1 ID=prot_Ecto-sp13_S_contig13659.2885.1|Name=mRNA_Ecto-sp13_S_contig13659.2885.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=447bp RASDLAGNVAATSYFDWTVDTNVPDTVVVACPSSVASSPLATFKILDTVGback to top mRNA from alignment at Ecto-sp13_S_contig13659:547..4631+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13659.2885.1 ID=mRNA_Ecto-sp13_S_contig13659.2885.1|Name=mRNA_Ecto-sp13_S_contig13659.2885.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4085bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13659:547..4631+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13659:547..4631+ >mRNA_Ecto-sp13_S_contig13659.2885.1 ID=mRNA_Ecto-sp13_S_contig13659.2885.1|Name=mRNA_Ecto-sp13_S_contig13659.2885.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1341bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13659:547..4631+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |