mRNA_Ecto-sp13_S_contig13650.2880.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13650.2880.1
Unique NamemRNA_Ecto-sp13_S_contig13650.2880.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13650.2880.1 vs. uniprot
Match: A0A6H5KLT5_9PHAE (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLT5_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 4.410e-52
Identity = 82/84 (97.62%), Postives = 83/84 (98.81%), Query Frame = 1
Query:    1 QLFINFGDNTFLDKSGFSPIGRVVVGMDVADRLYKGYGEGAPQGNGPNQGKIQSQGNAYLKGSFPKLSYIKSSTSVARPAEGDY 252
            QLFINFGDNTFLDKSGFSPIGRVVVGMDVADRLYKGYGEGAPQGNGPNQGKIQSQGNAYLKGSFPKLSYIKS+TSV RPAEGDY
Sbjct:  199 QLFINFGDNTFLDKSGFSPIGRVVVGMDVADRLYKGYGEGAPQGNGPNQGKIQSQGNAYLKGSFPKLSYIKSATSVPRPAEGDY 282          
BLAST of mRNA_Ecto-sp13_S_contig13650.2880.1 vs. uniprot
Match: A0A1V5XKF9_9DELT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Deltaproteobacteria bacterium ADurb.Bin207 TaxID=1852869 RepID=A0A1V5XKF9_9DELT)

HSP 1 Score: 120 bits (301), Expect = 5.670e-32
Identity = 52/74 (70.27%), Postives = 63/74 (85.14%), Query Frame = 1
Query:    1 QLFINFGDNTFLDKSGFSPIGRVVVGMDVADRLYKGYGEGAPQGNGPNQGKIQSQGNAYLKGSFPKLSYIKSST 222
            Q+FINFGDN+ LD  GFSP G+V+ GMDV D+LYKGYGEGAP G+GP QG++Q QGN+YLK SFPKL YIK++T
Sbjct:  173 QMFINFGDNSRLDSQGFSPFGKVITGMDVVDKLYKGYGEGAPVGDGPEQGRLQFQGNSYLKSSFPKLDYIKTAT 246          
BLAST of mRNA_Ecto-sp13_S_contig13650.2880.1 vs. uniprot
Match: A0A5C5X4P5_9PLAN (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Thalassoglobus neptunius TaxID=1938619 RepID=A0A5C5X4P5_9PLAN)

HSP 1 Score: 117 bits (294), Expect = 4.240e-31
Identity = 54/76 (71.05%), Postives = 59/76 (77.63%), Query Frame = 1
Query:    1 QLFINFGDNTFLDKSGFSPIGRVVVGMDVADRLYKGYGEGAPQGNGPNQGKIQSQGNAYLKGSFPKLSYIKSSTSV 228
            QLFINFGDN+FLD  GFSP G VV GM+V D LY  YGEGAP G GPNQG+IQ +GNAYL   FPKL YIKS+T V
Sbjct:  156 QLFINFGDNSFLDNQGFSPFGEVVEGMEVVDSLYAEYGEGAPSGRGPNQGRIQQEGNAYLNEKFPKLDYIKSATIV 231          
BLAST of mRNA_Ecto-sp13_S_contig13650.2880.1 vs. uniprot
Match: A0A517QVD7_9PLAN (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Thalassoglobus polymorphus TaxID=2527994 RepID=A0A517QVD7_9PLAN)

HSP 1 Score: 115 bits (288), Expect = 7.560e-31
Identity = 50/76 (65.79%), Postives = 60/76 (78.95%), Query Frame = 1
Query:    1 QLFINFGDNTFLDKSGFSPIGRVVVGMDVADRLYKGYGEGAPQGNGPNQGKIQSQGNAYLKGSFPKLSYIKSSTSV 228
            Q+FINFGDN+FLD  GF+P G+V  GM+V D LY GYGEGAPQG GP QG++QS+GN YLK  FP+L YIK +T V
Sbjct:   98 QVFINFGDNSFLDNQGFAPFGKVTEGMEVVDALYAGYGEGAPQGRGPGQGQVQSKGNEYLKADFPELDYIKQATVV 173          
BLAST of mRNA_Ecto-sp13_S_contig13650.2880.1 vs. uniprot
Match: A0A3E1EN89_9BACT (Peptidylprolyl isomerase n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A3E1EN89_9BACT)

HSP 1 Score: 117 bits (292), Expect = 8.260e-31
Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 1
Query:    1 QLFINFGDNTFLDKSGFSPIGRVVVGMDVADRLYKGYGEGAPQGNGPNQGKIQSQGNAYLKGSFPKLSYIKSSTSV 228
            Q FINFGDNT LD  GFSP G++  GMDV D++YKGYGEGAP+GNGP+Q + QS+GNAY K  FPKL YIKS+T V
Sbjct:  155 QFFINFGDNTQLDTMGFSPFGKITEGMDVVDKIYKGYGEGAPRGNGPDQMRAQSEGNAYFKKEFPKLDYIKSATLV 230          
BLAST of mRNA_Ecto-sp13_S_contig13650.2880.1 vs. uniprot
Match: A0A7S2CBJ7_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CBJ7_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.950e-30
Identity = 51/74 (68.92%), Postives = 59/74 (79.73%), Query Frame = 1
Query:    1 QLFINFGDNTFLDKSGFSPIGRVVVGMDVADRLYKGYGEGAPQGNGPNQGKIQSQGNAYLKGSFPKLSYIKSST 222
            Q+F N+GDN FLD+ GFSP G V  GMD+ ++LY GYGEGAP G GPNQGKIQ  GNAYLK SFPKLSYIK ++
Sbjct:  194 QIFFNYGDNQFLDRQGFSPFGTVKSGMDIVEKLYSGYGEGAPSGKGPNQGKIQKDGNAYLKESFPKLSYIKKAS 267          
BLAST of mRNA_Ecto-sp13_S_contig13650.2880.1 vs. uniprot
Match: A0A522Z3T8_9BACT (Peptidylprolyl isomerase (Fragment) n=1 Tax=bacterium TaxID=1869227 RepID=A0A522Z3T8_9BACT)

HSP 1 Score: 111 bits (277), Expect = 5.900e-30
Identity = 49/74 (66.22%), Postives = 60/74 (81.08%), Query Frame = 1
Query:    1 QLFINFGDNTFLDKSGFSPIGRVVVGMDVADRLYKGYGEGAPQGNGPNQGKIQSQGNAYLKGSFPKLSYIKSST 222
            Q FINF DN+ LD  GF+P G+VV GMDV D+L K YGEGAP+GNGP+QG+IQS+GN YLK  FP+L YIKS++
Sbjct:   35 QFFINFKDNSMLDSMGFTPFGKVVAGMDVVDKLNKEYGEGAPRGNGPDQGRIQSEGNTYLKKDFPRLDYIKSAS 108          
BLAST of mRNA_Ecto-sp13_S_contig13650.2880.1 vs. uniprot
Match: A0A838IBD0_9DELT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Bradymonadaceae bacterium TaxID=2740543 RepID=A0A838IBD0_9DELT)

HSP 1 Score: 113 bits (283), Expect = 6.120e-30
Identity = 51/76 (67.11%), Postives = 61/76 (80.26%), Query Frame = 1
Query:    1 QLFINFGDNTFLDKSGFSPIGRVVVGMDVADRLYKGYGEGAPQGNGPNQGKIQSQGNAYLKGSFPKLSYIKSSTSV 228
            QLFINFG N  LD  GF+P+G+VV GMDV + LY GYGEGAPQG GP+QG++Q++GN YLK SFP+L YIKS T V
Sbjct:  111 QLFINFGQNAGLDPQGFAPLGKVVEGMDVVNSLYAGYGEGAPQGRGPSQGRMQAEGNTYLKSSFPELDYIKSVTIV 186          
BLAST of mRNA_Ecto-sp13_S_contig13650.2880.1 vs. uniprot
Match: A0A7S2RJE7_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJE7_9STRA)

HSP 1 Score: 116 bits (290), Expect = 6.710e-30
Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 1
Query:    1 QLFINFGDNTFLDKSGFSPIGRVVVGMDVADRLYKGYGEGAPQGNGPNQGKIQSQGNAYLKGSFPKLSYIKSSTSV 228
            Q+FINF DN FLD+SGFSP   V  GMD+ ++LY GYGEGAP GNGPNQG IQS+GNAYL  S+PKLS+IKS+  V
Sbjct:  209 QVFINFKDNKFLDRSGFSPFAEVTSGMDIVEKLYSGYGEGAPNGNGPNQGLIQSKGNAYLSASYPKLSFIKSAKVV 284          
BLAST of mRNA_Ecto-sp13_S_contig13650.2880.1 vs. uniprot
Match: A0A539EH08_9BACT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Elusimicrobia bacterium TaxID=2030800 RepID=A0A539EH08_9BACT)

HSP 1 Score: 114 bits (286), Expect = 8.740e-30
Identity = 50/72 (69.44%), Postives = 59/72 (81.94%), Query Frame = 1
Query:    1 QLFINFGDNTFLDKSGFSPIGRVVVGMDVADRLYKGYGEGAPQGNGPNQGKIQSQGNAYLKGSFPKLSYIKS 216
            Q FINF DN  LD  GF+P G+VV+GMDV D+LYKGYGEGAPQG GP+QG++Q++GNAYLK  FPKL YI S
Sbjct:  167 QFFINFKDNGMLDSMGFTPFGKVVLGMDVVDKLYKGYGEGAPQGGGPDQGRVQAEGNAYLKKDFPKLDYITS 238          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13650.2880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLT5_9PHAE4.410e-5297.62Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A1V5XKF9_9DELT5.670e-3270.27Peptidyl-prolyl cis-trans isomerase n=1 Tax=Deltap... [more]
A0A5C5X4P5_9PLAN4.240e-3171.05Peptidyl-prolyl cis-trans isomerase n=1 Tax=Thalas... [more]
A0A517QVD7_9PLAN7.560e-3165.79Peptidyl-prolyl cis-trans isomerase n=1 Tax=Thalas... [more]
A0A3E1EN89_9BACT8.260e-3168.42Peptidylprolyl isomerase n=1 Tax=Verrucomicrobia b... [more]
A0A7S2CBJ7_9STRA1.950e-3068.92Peptidyl-prolyl cis-trans isomerase n=1 Tax=Floren... [more]
A0A522Z3T8_9BACT5.900e-3066.22Peptidylprolyl isomerase (Fragment) n=1 Tax=bacter... [more]
A0A838IBD0_9DELT6.120e-3067.11Peptidyl-prolyl cis-trans isomerase n=1 Tax=Bradym... [more]
A0A7S2RJE7_9STRA6.710e-3068.42Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhizoc... [more]
A0A539EH08_9BACT8.740e-3069.44Peptidyl-prolyl cis-trans isomerase n=1 Tax=Elusim... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13650contigEcto-sp13_S_contig13650:467..1344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score137.1
Seed ortholog evalue3.8e-30
Seed eggNOG ortholog2880.D8LSI0
Model size255
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
EggNOG OGs2S3DM@2759,COG0652@1
Cds size255
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462728.8965082-CDS-Ecto-sp13_S_contig13650:466..5321681462728.8965082-CDS-Ecto-sp13_S_contig13650:466..532Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13650 467..532 +
1681462728.9091172-CDS-Ecto-sp13_S_contig13650:1155..13441681462728.9091172-CDS-Ecto-sp13_S_contig13650:1155..1344Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13650 1156..1344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13650.2880.1prot_Ecto-sp13_S_contig13650.2880.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13650 467..1344 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13650.2880.1

>prot_Ecto-sp13_S_contig13650.2880.1 ID=prot_Ecto-sp13_S_contig13650.2880.1|Name=mRNA_Ecto-sp13_S_contig13650.2880.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
QLFINFGDNTFLDKSGFSPIGRVVVGMDVADRLYKGYGEGAPQGNGPNQG
KIQSQGNAYLKGSFPKLSYIKSSTSVARPAEGDY*
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mRNA from alignment at Ecto-sp13_S_contig13650:467..1344+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13650.2880.1 ID=mRNA_Ecto-sp13_S_contig13650.2880.1|Name=mRNA_Ecto-sp13_S_contig13650.2880.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=878bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13650:467..1344+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTGTTCATCAACTTCGGCGACAACACGTTTTTGGACAAGAGCGGGTT CTCGCCAATTGGCAGAGTAAGTGAAACCAGTGGGATGTGGTTCTGGTGGT TTTCGTTCCAGAGACAGAGAGACAAGGGAGAGAGAGGAGAGAGAGGAGAG AGAGAGCAGAGAGAGAGGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGA GAGAGGGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAAACGGC GATTGGGTTGCAATAATTGAGGCTGGTCTTATAGCCTCAACTTCGGTCGG CGCGGCGAGTTTGAGACCCAATCAAGTTTGCGTTTGCCCAAAATCTTGAG TCTGTGGGTCTGTGTCAGAGGATATCTCCTGAAGCACCGGGAAAAGTGCG GTCCAATTTTTGGTCAGGAAAATATAGTTTTTGCATGGTACAATCTCTCT CTCCTTGGAGTTGTCCTTCCGGAATTCTTTCTCCTTTCGTTCCTACAAAT ATTGCGCGACTTCGAGGCCATGACTCTTGTCATACCACACGAAGCCACGT AAATGAAATCGACGCATGTCTGCTTGCTAGCGCATCTCCTTCCCCCCTCA TCCCGTCAAAAGACGACCGACGTGCTACCCATTGACCCTTGAAAACGCGC TTGCCCTCCCGACTCCCCTGTGTCCCGCTTTGACCAAAGGTTGTGGTGGG CATGGACGTTGCGGATAGGCTGTACAAGGGCTACGGGGAGGGGGCCCCTC AGGGCAACGGGCCAAACCAGGGCAAGATCCAGAGCCAGGGCAACGCCTAC CTCAAGGGGTCGTTCCCGAAGCTGAGCTACATCAAGTCGTCGACGTCCGT AGCGCGCCCAGCTGAGGGGGACTACTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13650:467..1344+

>mRNA_Ecto-sp13_S_contig13650.2880.1 ID=mRNA_Ecto-sp13_S_contig13650.2880.1|Name=mRNA_Ecto-sp13_S_contig13650.2880.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13650:467..1344+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTGTTCATCAACTTCGGCGACAACACGTTTTTGGACAAGAGCGGGTT
CTCGCCAATTGGCAGAGTTGTGGTGGGCATGGACGTTGCGGATAGGCTGT
ACAAGGGCTACGGGGAGGGGGCCCCTCAGGGCAACGGGCCAAACCAGGGC
AAGATCCAGAGCCAGGGCAACGCCTACCTCAAGGGGTCGTTCCCGAAGCT
GAGCTACATCAAGTCGTCGACGTCCGTAGCGCGCCCAGCTGAGGGGGACT
ACTAG
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