mRNA_Ecto-sp13_S_contig13649.2878.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13649.2878.1
Unique NamemRNA_Ecto-sp13_S_contig13649.2878.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13649.2878.1 vs. uniprot
Match: D8LG95_ECTSI (Peptidase S1 and S6, chymotrypsin/Hap n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG95_ECTSI)

HSP 1 Score: 635 bits (1639), Expect = 2.490e-221
Identity = 310/316 (98.10%), Postives = 311/316 (98.42%), Query Frame = 1
Query:    1 QDNWRDNVMTLTLLEGAWATVPEGGVTPIKIMSIDTGAGTVSFPSGVQIANVREDSLTNLCEDSCSFAADGQCDEPGVAFGTSSSYGGSYMGSYYSDMLNYNPYGLGWGYDDDANSFLGTNDYSGMYRYAGYDTTYQYYGMTLDDDGFFNGMSPCDVGTDCTDCGVKFVADGTCTNTCQHARDGYCDDPRASGVCXXXXXXXXXXPWGDGNSNFTLTTFYQSSSWFDDDDWEMLWNDDGVLYGQEMNAQAPYKRDWNDHEVLHKEAPGAGTIFVDVLWAMVVLVGCSMSLGGCMVAYRHFKAGGGGAPMYLPVQAA 948
            QDNWRDNVMTL+LLEGAWATVPEG VTPIKIMSIDTGAGTVS PSGVQIANVREDS TNLCEDSCSFAADGQCDEPGVAFGTSSSYGGSYMGSYYSDMLNYNPYGLGWGYDDDANSFLGTNDYSGMYRYAGYDTTYQYYGMTLDDDGFFNGMSPCDVGTDCTDCGVKFV DGTCTNTCQHARDGYCDDPRASGVC XXXXXXXXXPWGDGNSNFTLTTFYQSSSWFDDDDWEMLWNDDGVLYGQEMNAQAPYKRDWNDHEVLHKEAPGAGTIFVDVLWAMVVLVGCSMSLGGCMVAYRHFKAGGGGAPMYLPVQAA
Sbjct:  582 QDNWRDNVMTLSLLEGAWATVPEGEVTPIKIMSIDTGAGTVSLPSGVQIANVREDSSTNLCEDSCSFAADGQCDEPGVAFGTSSSYGGSYMGSYYSDMLNYNPYGLGWGYDDDANSFLGTNDYSGMYRYAGYDTTYQYYGMTLDDDGFFNGMSPCDVGTDCTDCGVKFVDDGTCTNTCQHARDGYCDDPRASGVCPXXXXXXXXXPWGDGNSNFTLTTFYQSSSWFDDDDWEMLWNDDGVLYGQEMNAQAPYKRDWNDHEVLHKEAPGAGTIFVDVLWAMVVLVGCSMSLGGCMVAYRHFKAGGGGAPMYLPVQAA 897          
BLAST of mRNA_Ecto-sp13_S_contig13649.2878.1 vs. uniprot
Match: A0A835YLV2_9STRA (Peptidase S1 and S6, chymotrypsin/Hap n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLV2_9STRA)

HSP 1 Score: 202 bits (515), Expect = 2.480e-55
Identity = 137/313 (43.77%), Postives = 175/313 (55.91%), Query Frame = 1
Query:    7 NWRDNVMTLTLLEG-AWATVPEGGVTPIKIMSIDTGAGTVSFPSG-VQIANVREDSLTNLCEDSCSFAADGQCDEPGVAFGTSSSYGGSYMGSYYSDMLNYNPYGLGWGY-DDDANSFLG--TNDYSGMYRYAGYDTTYQYYGMTLDDDGFFNGMSPCDVGTDCTDCGVKFVADGTCTNTC-QHARDGYCDDPRASGVCXXXXXXXXXXPWGDGNSNFTL------TTFYQSSSWFDDDDWEMLWNDDGVLYGQEMNAQAPYKRDWNDHEVLHKEAPGAGTIFVDVLWAMVVLVGCSMSLGGCMVAYRHFKAG 909
            NW    + L L EG +WA +       +K+  IDTGAG V+ P+G V +  V  DS   +CED+C + ADG CDEP       S+  G  +G+ +            WGY DDDAN      ++ Y+G + Y         YG   DD GF  G++PCD GTDCTDCGV    DG CTNTC + ARDG+CDD R  G C  XXXXXXX P G  + NFT       + +    +W+ DD    L +DD  L GQ  NA+  Y+R + DHE  H E  G G IF+DVLWA+V+LVG ++SLG CMVAYR  K+G
Sbjct:  589 NWTPTSIQLLLNEGKSWAKLSGAETASLKVSKIDTGAGLVTLPNGGVHVVTVHADSNEVICEDTCVYPADGTCDEP-------SAKTGGVLGTNHGK----------WGYSDDDANFHSAGYSSSYAGQHGYLA-----SSYGS--DDLGF--GIAPCDPGTDCTDCGVHLPDDGFCTNTCLKMARDGWCDDTRGGGTCLLXXXXXXXGPVG--HDNFTNGAWGAGSAYGSGENWYTDDSSNFLLDDDWALEGQAANAKPIYQRTFQDHESRHNEMEGEGGIFMDVLWAIVILVGGTVSLGFCMVAYRRLKSG 873          
BLAST of mRNA_Ecto-sp13_S_contig13649.2878.1 vs. uniprot
Match: A0A6H5JWG4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG4_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 3.730e-42
Identity = 111/298 (37.25%), Postives = 111/298 (37.25%), Query Frame = 1
Query:  616 PWGDGNSNFTLTTFYQSSSWFDDDDWEMLWNDDGVLYGQEMNAQAPYKRDWNDHEVLHK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EAPGAGTIFVDVLWAMVVLVGCSMSLGGCMVAYRHFKAGGGGAPMYLPVQAA 948
            PWGDGNSNFTLTTFYQSSSWFDDDDWEMLWNDDGVLYGQEMNAQAPYKRDWNDHEVLHK                                                                                                                                                                                           EAPGAGTIFVDVLWAMVVLVGCSMSLGGCMVAYRHFKAGGGGAPMYLPVQAA
Sbjct:  556 PWGDGNSNFTLTTFYQSSSWFDDDDWEMLWNDDGVLYGQEMNAQAPYKRDWNDHEVLHKNATTMKGISSWERNNKTXIPGIDFHHSSSACPSAASIRTMIAVATEKGKKLSHWDVKHAYIHAKLKEEIPQVPGRLWVDPFVFRKVVEGEVVGLIVIYVDDILVAADEGAREELFASLNKKFPAKNLGECTWYDGRAIAMDVEIVNTKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDEPAEAPGAGTIFVDVLWAMVVLVGCSMSLGGCMVAYRHFKAGGGGAPMYLPVQAA 853          
BLAST of mRNA_Ecto-sp13_S_contig13649.2878.1 vs. uniprot
Match: D7FRJ9_ECTSI (Trypsin domain protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRJ9_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 2.850e-36
Identity = 121/300 (40.33%), Postives = 154/300 (51.33%), Query Frame = 1
Query:    1 QDNWRDNVMTLTLLE--GA-WATVPEGGVT-PIKIMSIDTGAGTVSFPSG-VQIANVREDSLTNLCEDSCSFAADGQCDEP--GVAFGTSSSYGGSYMGSYYSDMLNYNPYGLGWGYDDDANSFLGTNDYSGMYRYAGYDTTYQYYGMTLDDDGFFNGMSPCDVGTDCTDCGVKFVADGTCTNTCQHARDGYCDDPRASGVCXXXXXXXXXXPWGDGNSNFTLTTFYQSSSWFDD--DDWEMLWNDDG--VLYGQEMNAQAPYKRDWNDHEVLHKEAPGAGTIFVDVLWAMVVLVGCSMS 867
            +  W D  +T++L    GA WA V     T  +K++S+DTG G V  P G + IA VR+D  T  CEDSC +A DGQCDE   GV                  + +N++    G   D    S   T+  SG   Y G        G   DD    N  S C +GTDCTDCG++   DG CTNTC+ ARDG CDD RA G+C   XXXXXX PW    SNFT    Y +S  F D  DD   L ND    +L GQ  N    +KR +  H  + KE+  A  +F++ LWA +VLVGCS++
Sbjct:  550 EQGWTDETVTISLSTDPGAMWANVRADDKTVEVKVVSVDTGGGEVFMPGGGIVIAEVRKDDATFNCEDSCVYANDGQCDEDRDGV------------------EAVNWS----GAMTDSIGESESFTSQASGSRGYLGSSAMP---GEDSDDLVLVNSPS-CPLGTDCTDCGLELAEDGRCTNTCRFARDGVCDDRRAVGLCADGXXXXXXGPWDQ--SNFTEVVEYATS--FSDAYDDDGFLANDANHPILDGQTGNGIGRFKRVFVKHNSIRKESDKAEGVFMETLWAAIVLVGCSVT 819          
BLAST of mRNA_Ecto-sp13_S_contig13649.2878.1 vs. uniprot
Match: A0A6U1PF74_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1PF74_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.180e-28
Identity = 114/327 (34.86%), Postives = 165/327 (50.46%), Query Frame = 1
Query:   16 DNVMTLTLLEGA-WATVPEGGVTPIKIMSIDTGAGTVSFPSGVQIANVR------EDSLTNLCEDSCSFAADGQCDEPGVAFGTSSSYGGSYMGSYYSDMLNYNPYGLGWGYDDDANSFLGTNDYSGMYR------YAGYDTTYQYYGMTLDDDGFFNGMSPCDVGTDCTDCGVKFVADGT-CTNTCQHARDGYCDDPRASGVCXXXXXXXXXXPWGDGNSNFTLTTFYQSSSWFDDDDWEMLWNDDGVLYGQEMNAQAP----YKRDWNDHEVLHKEAPGAG-TIFVDVLWAMVVLVGCSMSLGGCMVAYRHFKAGGGGAPMYLPV 939
            + ++ L L EG  WA VP G   PIK++SID+GAG   +   VQIA  +      ED+    C+DSC +A DG+CD+P                   +D +++   G  WG DDD   +    D S +Y       YAG    Y YYG         N ++ CD GTDCTDCG   V + T C NTC+ +RD YCDDPR + + XXXXXXXXXX       NFT    +  ++WFDDDD       D   Y ++++A+A      K    D   L  +  G+G + F+ ++ A+  ++G  + + G ++ +R  ++G   +  YLPV
Sbjct:   63 EKLVLLGLKEGKKWADVPAGETVPIKVVSIDSGAGEEQYNPPVQIAVAQADPSEDEDAHPGQCDDSCIYAFDGECDDPE------------------NDHVDH---GFEWGEDDD---YFYDYDDSDLYXXXXXFYYAG--GGYGYYGYDT-----LNYIAACDPGTDCTDCGGFGVTEATECDNTCRFSRDDYCDDPRGNDLXXXXXXXXXXXXXXX--DNFTA---HWDTTWFDDDDDYFYMPGDYEPY-EDLDAEAASAAVVKSVQPDSSELPADDVGSGGSSFMSIITAVACVIGAGVIVAGAVLGFRQLRSGQ--SLPYLPV 350          
BLAST of mRNA_Ecto-sp13_S_contig13649.2878.1 vs. uniprot
Match: A0A835YHY7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHY7_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.880e-20
Identity = 98/299 (32.78%), Postives = 127/299 (42.47%), Query Frame = 1
Query:  109 GAGTVSFPSG-VQIANVREDSLTNLCEDSCSFAADGQCDEPGVAFGTSSSYGGSYMGSYYSDMLNYNPYGLGWGYDDDANSFLGTNDYSGMYRYAGYDTTYQYYGMTLDDDGFFNGMSPCDVGTDCTDCGVKFVADGTCTNTCQHARDGYCDDPRASGVCXXXXXXXXXXPWGDGNSNFTL----------------------------TTFYQSSSWFDDDDWEMLWNDDGVLYGQEMNAQAPYKRD--WNDHEVLHKEAPGAGTIFVDVLWAMVVLVGCSMSLGGCMVAYRHFKAGG 912
            GAG V  P G V +A V+ D+    C+DSC+FA D  C E G+A            G  + D  +             A    G                            ++   + C+VGTDCTDC +  V DGTC NTC+HARD  CDD R  G   XXXXXXXXX    G SNFT                              +   S SW +D      +  + VL GQE NA  P+ R      H+ L +EA GA  +F D LW +V+LVG + S     +AYR+++ GG
Sbjct:  841 GAGEVVLPDGGVLVACVQPDNPNVRCDDSCTFANDNICHEEGLA------------GKLFYDAWH-------------AAKHAGXXXXXXXXXXXXXXXXXXXXXXXXXXXAWYKA-AVCEVGTDCTDCNIPVVVDGTCANTCKHARDDQCDDEREGGQGLXXXXXXXXXXGPVGASNFTADSRKGGVFDGLSSGQWGRDSASMSQLQGVSAASSQSWQED---STFFRGNDVLKGQEGNAAPPFFRHAFTKRHKQLTREAEGAEVLFEDALWGVVLLVGGTASALILYLAYRNYRRGG 1110          
BLAST of mRNA_Ecto-sp13_S_contig13649.2878.1 vs. uniprot
Match: F0XWD0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWD0_AURAN)

HSP 1 Score: 88.6 bits (218), Expect = 8.580e-16
Identity = 96/311 (30.87%), Postives = 134/311 (43.09%), Query Frame = 1
Query:   25 MTLTLLEG-AWATVPEGGVTPIKIM--SIDTGAGTVSFPS-GVQIANVREDSLTNLCEDSCSFAADGQCDEPGVAFGTSSSYGGSYMGSYYSDMLNYNPYGLGWGYDDDANSFLGTNDYSGMYRYAGYDTTYQYYGMTLDDDGFFNGMSPCDVGTDCTDCG---VKFVADGTCTNTCQHARDGYCDDPRASGVCXXXXXXXXXXPWGDGNSNFTLTTFYQSSSWFDD-----------DDWEMLWNDDGVLYGQEMNAQAPYKRDWNDHEVLHKEAPGAGTIFVDVLWAMVVLVGCSMSLGGCMVAYRHFK 903
            M L L +G +WA + E   +P+ +    +DTGAG V     G  IA V  D    +C+DSC +A DG CD+            GS  G  + D                       +DY G Y Y                  F   +  C+ GTDCTDCG    +  +   C+N CQ A DGYCDD R SG  XXXXXXXXXXP  +GN      T +    W+DD           ++++ L ++  V + +        K D        +E+ G G IF+ +L  +VV +GC M   G   A++ +K
Sbjct:  402 MVLLLKDGKSWAPLGESS-SPVSVYVTKVDTGAGEVVMEDDGAVIARVYPDPSGAVCDDSCEWALDGVCDD------------GSSQGRTWFD-----------------------DDYGGFYAYDXXXXXXXXXXXXXXXXXFLAPV--CEAGTDCTDCGGLDPEAPSGVDCSNACQWANDGYCDDTRTSGXXXXXXXXXXXXPASEGNF-----TTWDDDGWWDDXXXXXXXXYDFENYDALDDEPHVAFIKSTPNPKTKKSDM-------QESKGVGGIFMMLLEGVVVGIGCVMCAVGSWFAHKFYK 662          
BLAST of mRNA_Ecto-sp13_S_contig13649.2878.1 vs. uniprot
Match: A0A7S3NKQ2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NKQ2_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.620e-12
Identity = 88/260 (33.85%), Postives = 112/260 (43.08%), Query Frame = 1
Query:   85 IKIMSIDTGAGTVSFPSGVQIANVREDSLTNLCEDSCSFAADGQCDEPGVAFGTSSSYGGSYMGSYYSDMLNYNPYGLGWGYDDDANSFLGTNDYSGMYRYAGYDTTYQYYGMTLDDDGFF-------------------NGMSP--CDVGTDCTDCGVKFVADGT--------CTNTCQHARDGYCDDPRASGVCXXXXXXXXXXPWGD-GNSNFTLTTFYQSSSWFDDDDWEMLWNDDGVLYGQEMNAQAPYKRDWND 774
            +K++ IDTGAG V F     IA V  +   + C+DSC +A DG CD+     GT       Y+G    D     P         +AN +   +DY G+YR    D     YG   DD G++                    GM+   C  GTDCTDC  +   DG         C+NTC+ ARDGYCDD R  G+     XXXXXX  G  G SNFT          FDD+     W+DDG  Y          + +W D
Sbjct:  653 LKVIEIDTGAGGVIFEKNNVIATVVNEPDGDFCDDSCEWANDGVCDD-----GTQ-----PYIGDT-DDSTPRRP---------NANRY--DDDYGGLYR----DDDDDIYGYGEDDYGYYADRGXXXXXXXXXXXXXXXTGMNTAACAPGTDCTDCQPR-AGDGRLDEPKEEMCSNTCEFARDGYCDDGR-DGLPMYCPXXXXXXXXGPVGASNFTK---------FDDE----FWDDDGDNYYFTXXXXXXXEENWKD 871          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13649.2878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LG95_ECTSI2.490e-22198.10Peptidase S1 and S6, chymotrypsin/Hap n=1 Tax=Ecto... [more]
A0A835YLV2_9STRA2.480e-5543.77Peptidase S1 and S6, chymotrypsin/Hap n=1 Tax=Trib... [more]
A0A6H5JWG4_9PHAE3.730e-4237.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRJ9_ECTSI2.850e-3640.33Trypsin domain protein n=2 Tax=Ectocarpus siliculo... [more]
A0A6U1PF74_9STRA1.180e-2834.86Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YHY7_9STRA2.880e-2032.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F0XWD0_AURAN8.580e-1630.87Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3NKQ2_9STRA1.620e-1233.85Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13649contigEcto-sp13_S_contig13649:437..4618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score624.4
Seed ortholog evalue2.8e-176
Seed eggNOG ortholog2880.D8LG95
Model size948
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs2D060@1,2SCYI@2759
Cds size924
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13649.2878.1prot_Ecto-sp13_S_contig13649.2878.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13649 461..4618 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462728.4193864-UTR-Ecto-sp13_S_contig13649:436..4601681462728.4193864-UTR-Ecto-sp13_S_contig13649:436..460Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13649 437..460 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462728.4340832-CDS-Ecto-sp13_S_contig13649:460..6701681462728.4340832-CDS-Ecto-sp13_S_contig13649:460..670Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13649 461..670 +
1681462728.444262-CDS-Ecto-sp13_S_contig13649:1113..12561681462728.444262-CDS-Ecto-sp13_S_contig13649:1113..1256Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13649 1114..1256 +
1681462728.4523122-CDS-Ecto-sp13_S_contig13649:1872..19961681462728.4523122-CDS-Ecto-sp13_S_contig13649:1872..1996Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13649 1873..1996 +
1681462728.4603062-CDS-Ecto-sp13_S_contig13649:2822..29271681462728.4603062-CDS-Ecto-sp13_S_contig13649:2822..2927Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13649 2823..2927 +
1681462728.4683418-CDS-Ecto-sp13_S_contig13649:3435..36211681462728.4683418-CDS-Ecto-sp13_S_contig13649:3435..3621Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13649 3436..3621 +
1681462728.4764557-CDS-Ecto-sp13_S_contig13649:4462..46181681462728.4764557-CDS-Ecto-sp13_S_contig13649:4462..4618Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13649 4463..4618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13649.2878.1

>prot_Ecto-sp13_S_contig13649.2878.1 ID=prot_Ecto-sp13_S_contig13649.2878.1|Name=mRNA_Ecto-sp13_S_contig13649.2878.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=308bp
MTLTLLEGAWATVPEGGVTPIKIMSIDTGAGTVSFPSGVQIANVREDSLT
NLCEDSCSFAADGQCDEPGVAFGTSSSYGGSYMGSYYSDMLNYNPYGLGW
GYDDDANSFLGTNDYSGMYRYAGYDTTYQYYGMTLDDDGFFNGMSPCDVG
TDCTDCGVKFVADGTCTNTCQHARDGYCDDPRASGVCPSGTDCQDCGPWG
DGNSNFTLTTFYQSSSWFDDDDWEMLWNDDGVLYGQEMNAQAPYKRDWND
HEVLHKEAPGAGTIFVDVLWAMVVLVGCSMSLGGCMVAYRHFKAGGGGAP
MYLPVQAA
back to top

mRNA from alignment at Ecto-sp13_S_contig13649:437..4618+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13649.2878.1 ID=mRNA_Ecto-sp13_S_contig13649.2878.1|Name=mRNA_Ecto-sp13_S_contig13649.2878.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4182bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13649:437..4618+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGACAACTGGCGTGACAATGTGATGACCCTCACGCTGCTGGAAGGCGC CTGGGCCACCGTACCGGAGGGCGGGGTCACTCCCATCAAGATCATGTCCA TCGACACCGGGGCGGGAACTGTGTCCTTCCCGTCAGGCGTACAGATCGCC AACGTACGTGAGGACAGCCTCACCAACTTGTGCGAGGACAGCTGTTCCTT CGCGGCAGACGGCCAGTGCGACGAGCCCGGAGTGGTGAGTGGGATCTCTG CAGATTTTGTTGGGCCCGAGTTTTGGGTGTGATCTTGGTAGTTTTGGTTG GGCCGGAGTGGTGCGTGGGATCTACGTATCTTTGGTTGGGCCGGGCCTGT GAGTGAGATCTCCCGTAGATTTAGTCAGATAATGTGTTCCTGTTTGCTGC TTGCGGCCTTGTCTTAGCATTCAAAACGTTCTCCGGCGTAGTGGTAGGAT CTAGCATCCTCCCCGGTTCAACTGACGCGGACGCGTTCGGTGGTCACAGG CGTAGTTTCTTAATGCCTGTTTCGCGTACACGTCCATACTCCACTGTATG CATACAGCACTCAGCACTCCACCAGTCCATTGGCACTGCGGCTGTGTCGG TGAGCGTGGAGTTCGACACCTCAGTTGGCCCCCTAAATCTGAACCCACCC CCTTTTCCCGGTGTTCTTTGACTTCAGGCGTTCGGCACCTCTAGCAGCTA CGGGGGCTCTTACATGGGCAGCTACTACTCAGACATGCTCAACTACAACC CGTACGGCCTTGGGTGGGGCTACGACGACGATGCCAACAGCTTCCTCGGC ACCAACGACTACAGCGGCATGTAAGCCGGCCATGTTGAGCGACGCAAGAT AACACCCCCCCCCCGCTTCCGCACGAAAGTATCTTCCGCGGAGCCCCCCG GTGCCCTGTTTCGCGCTCTCTGTGTTTACACCCCTCCCCTCTCGAGGACG CGTGGTGAATGGTCTGGCTGCCAAGGCATGCAAAACACGACAGTACGCCC CTGCGTCGAGCAGTGCAAGAGTACTGTTGTGGATGAGCCGTTGTGAAGTG TTGAGTTAAACATCCGTCCGTGCCTCGTGTCGGCCGTGCTGTCGTGTCTC TGCTGTGGTGGGGACCGCGTTCGCGAGGAATTAAGTTATGAGACCATATC CCAACAACCCGAACCCAACTCGCTCGATTGCATACTTTATTCATCGTGTT CACTTCATAGGAAAAACCTACGAAGGCTACTGTCCTGTGGCCGTTTGTTT CGAACTATCACCACCGAGGGTGGTTTATGCATGTACAGTATCTGGAAATC CATAGTACCGTAGTTTCCTGCAGTTCGTCATGTTTGTGCGCTGCGTATGC GTGCATTCACCCTGTTGGCATGTTTCCAAGCCCACCCCCCTCTCTTTGCT TGGCATCCCTGTGTCTGGTTGTTCTCCTTGTCAAAGGTACCGTTACGCCG GATACGACACCACGTACCAGTACTACGGAATGACCCTGGACGATGACGGT TTCTTCAATGGAATGTCTCCTTGCGATGTGGGCACCGACTGCACTGACTG CGGAGTAAAGGTGCGATGATGGATGCACTAGAGGACCCTCAGCAGGGTCG GTTGAATACAGCCTCTGGGCCCATGCATTTGCGCCTGTACTCCGCATGAA TCATTCATGTATACCGCTGCTCTGAATAGTGCTGGTCCCTCTGAATGGTG CCGGTGACCTGGTCTGGTCCATACCGGCACTCCTGGGGGCCTATTGCTGT ACGAACTCCCCGTCTCTACATGCATTTGTAAGAAAATCCTCGCACAGGCA GTCCTCGCGAGCGGATGGTTGGGTGGTTGGTGGGTTGGTCCCATTTTCCA TCGCTTACGTCGATCAAGTTGTGTGCTCCATGTTGCCCTGGCCGTGGAGA TAAGTTGTCGAAGACTAAACCAGACCGATCTTATCGGTCGAGCAGTGGTT TTCTGGGGCCAGGGCGGGGGGGGGGTCGTTGTGTCTGGAAAAGGCGTATA GGTGGGTTGATTCGGCCGCAGTGATTTGTTTGCTGTGTTTGATACTCGAT AAAATGTAAAAAAAAAACAGAGTCGAACTTACTTCGGCAACACAAACTGC AATGCAAATATTTTGGATTTCCTTGCATGTGCACGCAAGAAGGGGGACAA GGCCGCCCCATGGAATTCGTCTAGTTTTGTTTGGTTGTAGTCCCGGCGTG AGTTCACTTTTCGCTTTGCTGTAGCCGATGCGCTTGGCTTCATCAATCTG CCCTGTTGTTATTGTTTCGTCGTGCTTGTGTTTATCCCCGTTGCGTTTCG TTTGCGTTTTTGCTGACGTTGTCGGCGGCTGACCAACCTGCTCCGATGAT TTTTTTATCGTTTTGGTGTCGTGTGGCGTCTCGCAGTTCGTGGCAGACGG GACTTGCACCAACACATGCCAGCACGCGAGAGACGGATACTGCGATGACC CGCGTGCCTCGGGCGTATGCCCTTCGGGAACGGACTGCCAAGTGAGGGCG AACCCTTTTTGATCTCTCATGTATTTTTTTTCGTGCGGGTGTATTTTTCG TTGTGACGGACCTTCCTAAGGGAGTGAACACGAAAATGATGGATGTTTGG TCTCTGCCTGAGCTTCCTCGAGATGCGGTGCGCTAGAGAAGCCAGAGGTT TACATGAGGGGGACGTAGTGCCGGCGATTTTCGTAGATCGGATGAGAGAA AGGGGTAGAGCGCGCGGCATTACGCTCTAGGAAGAGGAGAAAAGAGCAGC ACCATCATCCGTGATAGCCTTGCGAGAGTAGCAAACAAATCCTCGCCAGC CGTCCAGCTTTGGCCATCAATCGATGCCTCTTGTCTTGTGGGATCTAAGG TGGCCCTTTTGCCGAAGGAAGTGGACACAGACTCCTGCCCGACCTGACAG ATCGGTTCAGGCTATAACACCAGTTGCCTTTACGTGACTCGATATCATGC CATGACACGAACGCGCCTGTGCCGTACTGCCGTGACTCGACGTGGTCAGG ACTGCGGCCCCTGGGGGGACGGCAACTCGAACTTCACTTTGACAACGTTC TACCAATCGAGCTCGTGGTTTGACGATGACGACTGGGAGATGCTGTGGAA CGACGACGGTGTCTTGTACGGACAGGAGATGAACGCGCAGGCCCCGTACA AAAGAGACTGGAATGACCACGAAGTGCTCCACAAGGTGTACCATACTTCT GCGTCGCCGTAGGGTGGTAATGAGTCTGTCTTAATGTAAATGCCGTTGGG TACTGTAGGGTACGTGTGTTGGATGTCTCCACGGTGTATCGCGTTTCCAC AAAGTTTTTGGTAGATGATCTTCTCCGGCCAAGTGGTGCACAAATTCTCG GCATGCTGCCGTTAAATCCGCGATGTAGGATCTTTTCCCACCGATTTGTC CACCGGGTGGTACTAGGCCCTTCGCCCATTGTGCTCTCGTACCATCAACT GCATGAAAAACATGAGTCAAGACGAGGCTGTAGAAGCCCCATGACGCCGC ATCGGCACTCTAGGTCAGCTTTTGGCTTGCATTGTTTTGCCAGAAGAATA CCACAACAATGAAAGGTATAAGTTCGTGGGAGAAAATTCACAAGACCAAG TTGACAGGGAGACGCACACAGCGCGCAAGTGCGCGTGGCACATGGCGTAC GCACATTCTCCACCAGCACGGGTGATACGCGGACAACGCCACGGCGGTGA ATCAGAGTGCCGGCCCGATTCTCTTACAGGAAGAACAGCAGTGGAAGTGC ACCCTATTCTTGATGAAATGTGATCCGCGTGCAGCAGTGCCGTCCTTCTC CGCGTTGTTTATCCGAAATCTCCAAAACCTCACCCTATTCTCTGCACGCC CATTTTGCTGAAACTTTGTCCACTTGTCCCAACCTCCGTGTGACGATCTT TTTTTCCATCGTGGCGTTGTGTCTCCGAAATGTCCGACAACTCCACCTAC TTTGTACGCACGCTCATTTTGCTGAAAATGTGCGGCATCCTCTTCCCTCC TTCCTTGTTGCGTTCATCATTTTCAGGAGGCCCCCGGCGCGGGAACTATT TTTGTGGACGTGCTTTGGGCGATGGTGGTGCTGGTGGGCTGTTCGATGTC TCTCGGGGGGTGCATGGTCGCGTACCGGCACTTCAAGGCGGGGGGCGGGG GCGCGCCCATGTACCTCCCTGTTCAGGCAGCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13649:437..4618+

>mRNA_Ecto-sp13_S_contig13649.2878.1 ID=mRNA_Ecto-sp13_S_contig13649.2878.1|Name=mRNA_Ecto-sp13_S_contig13649.2878.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=924bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13649:437..4618+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCCTCACGCTGCTGGAAGGCGCCTGGGCCACCGTACCGGAGGGCGG
GGTCACTCCCATCAAGATCATGTCCATCGACACCGGGGCGGGAACTGTGT
CCTTCCCGTCAGGCGTACAGATCGCCAACGTACGTGAGGACAGCCTCACC
AACTTGTGCGAGGACAGCTGTTCCTTCGCGGCAGACGGCCAGTGCGACGA
GCCCGGAGTGGCGTTCGGCACCTCTAGCAGCTACGGGGGCTCTTACATGG
GCAGCTACTACTCAGACATGCTCAACTACAACCCGTACGGCCTTGGGTGG
GGCTACGACGACGATGCCAACAGCTTCCTCGGCACCAACGACTACAGCGG
CATGTACCGTTACGCCGGATACGACACCACGTACCAGTACTACGGAATGA
CCCTGGACGATGACGGTTTCTTCAATGGAATGTCTCCTTGCGATGTGGGC
ACCGACTGCACTGACTGCGGAGTAAAGTTCGTGGCAGACGGGACTTGCAC
CAACACATGCCAGCACGCGAGAGACGGATACTGCGATGACCCGCGTGCCT
CGGGCGTATGCCCTTCGGGAACGGACTGCCAAGACTGCGGCCCCTGGGGG
GACGGCAACTCGAACTTCACTTTGACAACGTTCTACCAATCGAGCTCGTG
GTTTGACGATGACGACTGGGAGATGCTGTGGAACGACGACGGTGTCTTGT
ACGGACAGGAGATGAACGCGCAGGCCCCGTACAAAAGAGACTGGAATGAC
CACGAAGTGCTCCACAAGGAGGCCCCCGGCGCGGGAACTATTTTTGTGGA
CGTGCTTTGGGCGATGGTGGTGCTGGTGGGCTGTTCGATGTCTCTCGGGG
GGTGCATGGTCGCGTACCGGCACTTCAAGGCGGGGGGCGGGGGCGCGCCC
ATGTACCTCCCTGTTCAGGCAGCG
back to top