mRNA_Ecto-sp13_S_contig13592.2843.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13592.2843.1
Unique NamemRNA_Ecto-sp13_S_contig13592.2843.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13592.2843.1 vs. uniprot
Match: D7G3Z1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3Z1_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 5.080e-51
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 1 
Query:    1 MGHDHSKPVKAVVGVLALASAASAFVAPGAAGRGLTQQ-PTRTSATVVFGQGKYDGKLWDDAAKDDVKSMYNPNEPWSDNNFDPF 252
            MGHDHSKPVKAVVGVLALASAASAFVAPGAAGRGLTQQ PTRTSATVVFGQGKYDGKLWDDAAKDDVKSMYNPNEPWSDNNFDPF
Sbjct:    1 MGHDHSKPVKAVVGVLALASAASAFVAPGAAGRGLTQQQPTRTSATVVFGQGKYDGKLWDDAAKDDVKSMYNPNEPWSDNNFDPF 85
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BLAST of mRNA_Ecto-sp13_S_contig13592.2843.1 vs. uniprot
Match: A0A835YRS3_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRS3_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.980e-14
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:   31 AVVGVLALASAASAFVAPGAAGRGLTQQPTRTSATVVFGQGKYDGKLWDDAAKDDVKSMYNPNEPWSDNNFDPF 252
            AVV +LAL +AASAFVAP      L Q+    S + +F +GKYDGKLWD+AAK DV S Y+ ++PW + NFDP+
Sbjct:    4 AVVALLALVAAASAFVAPSVP---LAQR----SCSRLFAEGKYDGKLWDEAAKQDVLSTYDASKPWGETNFDPY 70
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13592.2843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3Z1_ECTSI5.080e-5198.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YRS3_9STRA1.980e-1454.05Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13592contigEcto-sp13_S_contig13592:1284..1535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size252
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_000740.1
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462725.5638056-CDS-Ecto-sp13_S_contig13592:1283..15351681462725.5638056-CDS-Ecto-sp13_S_contig13592:1283..1535Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13592 1284..1535 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13592.2843.1prot_Ecto-sp13_S_contig13592.2843.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13592 1284..1535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13592.2843.1

>prot_Ecto-sp13_S_contig13592.2843.1 ID=prot_Ecto-sp13_S_contig13592.2843.1|Name=mRNA_Ecto-sp13_S_contig13592.2843.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
MGHDHSKPVKAVVGVLALASAASAFVAPGAAGRGLTQQPTRTSATVVFGQ
GKYDGKLWDDAAKDDVKSMYNPNEPWSDNNFDPF
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mRNA from alignment at Ecto-sp13_S_contig13592:1284..1535-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13592.2843.1 ID=mRNA_Ecto-sp13_S_contig13592.2843.1|Name=mRNA_Ecto-sp13_S_contig13592.2843.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13592:1284..1535- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGCACGACCACTCTAAGCCCGTCAAGGCCGTCGTCGGCGTCCTCGC
CCTCGCCTCCGCTGCTTCGGCGTTCGTGGCGCCCGGCGCCGCCGGCCGCG
GGCTCACGCAGCAGCCGACCAGGACTTCCGCGACCGTCGTGTTCGGACAG
GGCAAGTACGACGGCAAGCTGTGGGACGACGCCGCGAAGGATGACGTCAA
GTCGATGTACAACCCCAACGAGCCCTGGAGCGACAACAACTTCGACCCCT
TC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13592:1284..1535-

>mRNA_Ecto-sp13_S_contig13592.2843.1 ID=mRNA_Ecto-sp13_S_contig13592.2843.1|Name=mRNA_Ecto-sp13_S_contig13592.2843.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13592:1284..1535- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGCACGACCACTCTAAGCCCGTCAAGGCCGTCGTCGGCGTCCTCGC
CCTCGCCTCCGCTGCTTCGGCGTTCGTGGCGCCCGGCGCCGCCGGCCGCG
GGCTCACGCAGCAGCCGACCAGGACTTCCGCGACCGTCGTGTTCGGACAG
GGCAAGTACGACGGCAAGCTGTGGGACGACGCCGCGAAGGATGACGTCAA
GTCGATGTACAACCCCAACGAGCCCTGGAGCGACAACAACTTCGACCCCT
TC
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