prot_Ecto-sp13_S_contig13592.2843.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13592.2843.1
Unique Nameprot_Ecto-sp13_S_contig13592.2843.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length84
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13592.2843.1 vs. uniprot
Match: D7G3Z1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3Z1_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 5.080e-51
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 0 
Query:    1 MGHDHSKPVKAVVGVLALASAASAFVAPGAAGRGLTQQ-PTRTSATVVFGQGKYDGKLWDDAAKDDVKSMYNPNEPWSDNNFDPF 84
            MGHDHSKPVKAVVGVLALASAASAFVAPGAAGRGLTQQ PTRTSATVVFGQGKYDGKLWDDAAKDDVKSMYNPNEPWSDNNFDPF
Sbjct:    1 MGHDHSKPVKAVVGVLALASAASAFVAPGAAGRGLTQQQPTRTSATVVFGQGKYDGKLWDDAAKDDVKSMYNPNEPWSDNNFDPF 85
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BLAST of mRNA_Ecto-sp13_S_contig13592.2843.1 vs. uniprot
Match: A0A835YRS3_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRS3_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.980e-14
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 0 
Query:   11 AVVGVLALASAASAFVAPGAAGRGLTQQPTRTSATVVFGQGKYDGKLWDDAAKDDVKSMYNPNEPWSDNNFDPF 84
            AVV +LAL +AASAFVAP      L Q+    S + +F +GKYDGKLWD+AAK DV S Y+ ++PW + NFDP+
Sbjct:    4 AVVALLALVAAASAFVAPSVP---LAQR----SCSRLFAEGKYDGKLWDEAAKQDVLSTYDASKPWGETNFDPY 70
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13592.2843.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3Z1_ECTSI5.080e-5198.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YRS3_9STRA1.980e-1454.05Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 11..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..84
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..10
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..24
score: 0.599
NoneNo IPR availableTMHMMTMhelixcoord: 12..31

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13592contigEcto-sp13_S_contig13592:1284..1535 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13592.2843.1mRNA_Ecto-sp13_S_contig13592.2843.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13592 1284..1535 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13592.2843.1 ID=prot_Ecto-sp13_S_contig13592.2843.1|Name=mRNA_Ecto-sp13_S_contig13592.2843.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
MGHDHSKPVKAVVGVLALASAASAFVAPGAAGRGLTQQPTRTSATVVFGQ
GKYDGKLWDDAAKDDVKSMYNPNEPWSDNNFDPF
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