prot_Ecto-sp13_S_contig13564.2827.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13564.2827.1
Unique Nameprot_Ecto-sp13_S_contig13564.2827.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length227
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13564.2827.1 vs. uniprot
Match: D8LCB1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB1_ECTSI)

HSP 1 Score: 369 bits (948), Expect = 8.970e-126
Identity = 196/216 (90.74%), Postives = 201/216 (93.06%), Query Frame = 0 
Query:    1 MVLLLDSERLWMSTIFMFGAGQTMMTIGGILTARMWIYCNDPRLTRETPEILAISEALERPTGFFASNTAMCVGPAIATALAAAKSLQAAGKVSAVAFLGLIVFCDFIILKSGAALLRTVNRSLRNSMERSERSNSIVAGTVGSLQLLKAARKNIKFALCFCVVVSLLTAFFIIGLFTTYGATAPLIFFGIPYGCSPPVWFVFNVQLHAGRSRSRT 216
            MVLLLDSERLWMSTIFM  AGQTMMTIGGILT RMWIYCNDPRLTRETPEILAISEALERPTG F SNT MCVGPAIAT LA AKSLQAAGKVSAVAFLGLIVFCDFIILKSG ALLRTVN+ LRN++ERSERSNSIVAGTVGSL LLKAARKNIKFAL FC+VVSLLTAF +I LFTTYGATAPLIFFGIPYG SPPVWFVFNVQLHAGRSRSRT
Sbjct:  115 MVLLLDSERLWMSTIFMLSAGQTMMTIGGILTVRMWIYCNDPRLTRETPEILAISEALERPTGCFVSNTVMCVGPAIATVLAVAKSLQAAGKVSAVAFLGLIVFCDFIILKSGTALLRTVNKYLRNTVERSERSNSIVAGTVGSLPLLKAARKNIKFALYFCLVVSLLTAFLMICLFTTYGATAPLIFFGIPYGFSPPVWFVFNVQLHAGRSRSRT 330
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BLAST of mRNA_Ecto-sp13_S_contig13564.2827.1 vs. uniprot
Match: A0A6H5KM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM92_9PHAE)

HSP 1 Score: 336 bits (862), Expect = 2.680e-112
Identity = 185/249 (74.30%), Postives = 198/249 (79.52%), Query Frame = 0 
Query:    1 MVLLLDSERLWMSTIFMFGAGQTMMTIGGILTARMWIYC------------------------------NDPRLTRETPEILAISEALERPTGFFASNTAMCVGPAIATALAAAKSLQAAGKVSAVAFLGLIVFCDFIILKSGAALLRTVNRSLRNSMERSERSNSIVAGTVGSLQLLKAARKNIKFALCFCVVVSLLT-AFFIIGLFTTYGATAPLIFFGIPYGCSPPVWFVFNVQLHAGRSRSRTHP 218
            MVLLLDSERLWMSTIFMFG GQ MMTIGGILT RMW+YC                              NDPRL RETPE+L ISEALERPTG F SNT MCVGPA+AT LAAAKSLQAA  VSAVAFLGLIVFCDFIILK+  ALL+TVN+ LRNS+ RSE+SNSI+AGTVGSLQLLKAARKNIKFAL FCVVVSLLT +  +IGLFTTYGATAPLIF GIPYGCSPPVWFVFN+QLHAGRSR+RT P
Sbjct:  115 MVLLLDSERLWMSTIFMFGIGQIMMTIGGILTVRMWLYCLTSDEQRSPLQLNRFPYVSPLRNHILFLASNDPRLIRETPELLMISEALERPTGLFVSNTVMCVGPAVATVLAAAKSLQAACMVSAVAFLGLIVFCDFIILKTATALLQTVNKYLRNSVVRSEKSNSIMAGTVGSLQLLKAARKNIKFALYFCVVVSLLTFSIVMIGLFTTYGATAPLIFSGIPYGCSPPVWFVFNIQLHAGRSRNRTEP 363
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13564.2827.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCB1_ECTSI8.970e-12690.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KM92_9PHAE2.680e-11274.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..14
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 186..205
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 157..180
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 85..95
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 206..226
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 181..185
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 96..117
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 38..63
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 118..156
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 15..37
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 64..84
NoneNo IPR availableTMHMMTMhelixcoord: 157..179
NoneNo IPR availableTMHMMTMhelixcoord: 94..116
NoneNo IPR availableTMHMMTMhelixcoord: 62..84
NoneNo IPR availableTMHMMTMhelixcoord: 15..37
NoneNo IPR availableTMHMMTMhelixcoord: 183..205

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13564contigEcto-sp13_S_contig13564:117..1152 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13564.2827.1mRNA_Ecto-sp13_S_contig13564.2827.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13564 3..1199 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13564.2827.1 ID=prot_Ecto-sp13_S_contig13564.2827.1|Name=mRNA_Ecto-sp13_S_contig13564.2827.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=227bp
MVLLLDSERLWMSTIFMFGAGQTMMTIGGILTARMWIYCNDPRLTRETPE
ILAISEALERPTGFFASNTAMCVGPAIATALAAAKSLQAAGKVSAVAFLG
LIVFCDFIILKSGAALLRTVNRSLRNSMERSERSNSIVAGTVGSLQLLKA
ARKNIKFALCFCVVVSLLTAFFIIGLFTTYGATAPLIFFGIPYGCSPPVW
FVFNVQLHAGRSRSRTHPMSFQALAA*
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