mRNA_Ecto-sp13_S_contig13564.2827.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13564.2827.1
Unique NamemRNA_Ecto-sp13_S_contig13564.2827.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13564.2827.1 vs. uniprot
Match: D8LCB1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB1_ECTSI)

HSP 1 Score: 431 bits (1108), Expect = 3.560e-149
Identity = 227/254 (89.37%), Postives = 234/254 (92.13%), Query Frame = 1 
Query:    1 VKHHRQLIAASTSSVENCRRWLHIVVIIRAVVGLCYFAMVLLLDSERLWMSTIFMFGAGQTMMTIGGILTARMWIYCNDPRLTRETPEILAISEALERPTGFFASNTAMCVGPAIATALAAAKSLQAAGKVSAVAFLGLIVFCDFIILKSGAALLRTVNRSLRNSMERSERSNSIVAGTVGSLQLLKAARKNIKFALCFCVVVSLLTAFFIIGLFTTYGATAPLIFFGIPYGCSPPVWFVFNVQLHAGRSRSRT 762
            VKHHRQ+I AS SSVE CRRWLHIVVII AV+GLCYF MVLLLDSERLWMSTIFM  AGQTMMTIGGILT RMWIYCNDPRLTRETPEILAISEALERPTG F SNT MCVGPAIAT LA AKSLQAAGKVSAVAFLGLIVFCDFIILKSG ALLRTVN+ LRN++ERSERSNSIVAGTVGSL LLKAARKNIKFAL FC+VVSLLTAF +I LFTTYGATAPLIFFGIPYG SPPVWFVFNVQLHAGRSRSRT
Sbjct:   77 VKHHRQVITASISSVEKCRRWLHIVVIIHAVIGLCYFGMVLLLDSERLWMSTIFMLSAGQTMMTIGGILTVRMWIYCNDPRLTRETPEILAISEALERPTGCFVSNTVMCVGPAIATVLAVAKSLQAAGKVSAVAFLGLIVFCDFIILKSGTALLRTVNKYLRNTVERSERSNSIVAGTVGSLPLLKAARKNIKFALYFCLVVSLLTAFLMICLFTTYGATAPLIFFGIPYGFSPPVWFVFNVQLHAGRSRSRT 330
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BLAST of mRNA_Ecto-sp13_S_contig13564.2827.1 vs. uniprot
Match: A0A6H5KM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM92_9PHAE)

HSP 1 Score: 398 bits (1022), Expect = 1.150e-135
Identity = 216/287 (75.26%), Postives = 232/287 (80.84%), Query Frame = 1 
Query:    1 VKHHRQLIAASTSSVENCRRWLHIVVIIRAVVGLCYFAMVLLLDSERLWMSTIFMFGAGQTMMTIGGILTARMWIYC------------------------------NDPRLTRETPEILAISEALERPTGFFASNTAMCVGPAIATALAAAKSLQAAGKVSAVAFLGLIVFCDFIILKSGAALLRTVNRSLRNSMERSERSNSIVAGTVGSLQLLKAARKNIKFALCFCVVVSLLT-AFFIIGLFTTYGATAPLIFFGIPYGCSPPVWFVFNVQLHAGRSRSRTHP 768
            VK+HRQ +AASTSSVE CRRWLHIVVII AV+GLCYF MVLLLDSERLWMSTIFMFG GQ MMTIGGILT RMW+YC                              NDPRL RETPE+L ISEALERPTG F SNT MCVGPA+AT LAAAKSLQAA  VSAVAFLGLIVFCDFIILK+  ALL+TVN+ LRNS+ RSE+SNSI+AGTVGSLQLLKAARKNIKFAL FCVVVSLLT +  +IGLFTTYGATAPLIF GIPYGCSPPVWFVFN+QLHAGRSR+RT P
Sbjct:   77 VKYHRQFMAASTSSVEKCRRWLHIVVIIHAVIGLCYFGMVLLLDSERLWMSTIFMFGIGQIMMTIGGILTVRMWLYCLTSDEQRSPLQLNRFPYVSPLRNHILFLASNDPRLIRETPELLMISEALERPTGLFVSNTVMCVGPAVATVLAAAKSLQAACMVSAVAFLGLIVFCDFIILKTATALLQTVNKYLRNSVVRSEKSNSIMAGTVGSLQLLKAARKNIKFALYFCVVVSLLTFSIVMIGLFTTYGATAPLIFSGIPYGCSPPVWFVFNIQLHAGRSRNRTEP 363
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13564.2827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCB1_ECTSI3.560e-14989.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KM92_9PHAE1.150e-13575.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13564contigEcto-sp13_S_contig13564:3..1199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size842
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_005410.1
Cds size681
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462724.420771-UTR-Ecto-sp13_S_contig13564:2..1161681462724.420771-UTR-Ecto-sp13_S_contig13564:2..116Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13564 3..116 +
1681462724.4518452-UTR-Ecto-sp13_S_contig13564:1152..11991681462724.4518452-UTR-Ecto-sp13_S_contig13564:1152..1199Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13564 1153..1199 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462724.4334052-CDS-Ecto-sp13_S_contig13564:116..2321681462724.4334052-CDS-Ecto-sp13_S_contig13564:116..232Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13564 117..232 +
1681462724.4424596-CDS-Ecto-sp13_S_contig13564:587..11521681462724.4424596-CDS-Ecto-sp13_S_contig13564:587..1152Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13564 588..1152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13564.2827.1prot_Ecto-sp13_S_contig13564.2827.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13564 117..1152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13564.2827.1

>prot_Ecto-sp13_S_contig13564.2827.1 ID=prot_Ecto-sp13_S_contig13564.2827.1|Name=mRNA_Ecto-sp13_S_contig13564.2827.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=227bp
MVLLLDSERLWMSTIFMFGAGQTMMTIGGILTARMWIYCNDPRLTRETPE
ILAISEALERPTGFFASNTAMCVGPAIATALAAAKSLQAAGKVSAVAFLG
LIVFCDFIILKSGAALLRTVNRSLRNSMERSERSNSIVAGTVGSLQLLKA
ARKNIKFALCFCVVVSLLTAFFIIGLFTTYGATAPLIFFGIPYGCSPPVW
FVFNVQLHAGRSRSRTHPMSFQALAA*
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mRNA from alignment at Ecto-sp13_S_contig13564:3..1199+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13564.2827.1 ID=mRNA_Ecto-sp13_S_contig13564.2827.1|Name=mRNA_Ecto-sp13_S_contig13564.2827.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1197bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13564:3..1199+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTAAAACATCACAGACAGCTCATCGCGGCATCCACTTCCTCGGTAGAGAA
TTGCCGTAGATGGCTTCATATCGTCGTCATTATCCGCGCTGTTGTCGGCC
TATGCTATTTTGCAATGGTGCTGTTACTGGACAGCGAACGACTGTGGATG
TCCACCATCTTCATGTTCGGCGCAGGCCAAACCATGATGACCATCGGTGG
TATTTTGACCGCACGCATGTGGATTTACTGGTAAGTGCCGGGTTGCAAAA
TATTCTCTCGTTCTCAGATTATAGGATTGTTTGTTTCATTAAGAAAATGT
TTTGTCAAGGGTACATTCCAGCAATCCCCCCTCTTCTATGCCTGACGTAA
ACGTTTTCGCACACGCTCCTTTTCCTTCTTCTGGACAGCTTGTGACCGTA
CTCCAAACGGTGTTGCTAGTCGTCCAGTCCTCGTTTTTCCATCCTGTATC
AATCATGTATCGTCCGAATGACGACTGATGGTTGATGCGATTCGCCTCCC
GGCTTGACGTCGGACCGCTCGCCTTATAACCGAACCATTTCCCGTATGTT
AACCGTCTTCGCAACCAATCACTCTTTCTTGCTAGCAACGATCCCCGGTT
GACTCGAGAGACACCGGAAATACTGGCGATATCGGAAGCGCTAGAACGGC
CGACGGGGTTCTTTGCGTCCAACACTGCGATGTGTGTAGGCCCTGCCATT
GCAACTGCCCTAGCAGCGGCTAAGAGTTTACAAGCGGCTGGTAAGGTCTC
CGCGGTAGCATTTCTGGGTTTGATCGTATTCTGCGACTTCATCATCTTGA
AGAGCGGTGCTGCCCTTTTGCGAACTGTGAACAGATCGTTGCGGAACAGC
ATGGAGCGTTCCGAGAGGAGCAACAGCATAGTGGCAGGAACGGTAGGATC
GCTACAGCTCTTGAAAGCAGCTAGGAAGAATATCAAGTTTGCGTTGTGTT
TTTGCGTCGTTGTGTCCCTGTTGACCGCGTTTTTCATTATCGGCCTTTTC
ACGACCTATGGAGCGACAGCACCGTTGATCTTTTTCGGCATTCCGTATGG
ATGCTCACCTCCCGTATGGTTCGTTTTCAACGTCCAGCTGCACGCAGGGA
GGAGCAGGAGTCGTACCCACCCGATGTCGTTTCAGGCGCTAGCAGCGTAA
TTCGGCAAGTATCCAGTGTCGCAACGAGAATCGTGTCTAGGGTCAAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13564:3..1199+

>mRNA_Ecto-sp13_S_contig13564.2827.1 ID=mRNA_Ecto-sp13_S_contig13564.2827.1|Name=mRNA_Ecto-sp13_S_contig13564.2827.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=681bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13564:3..1199+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCTGTTACTGGACAGCGAACGACTGTGGATGTCCACCATCTTCAT
GTTCGGCGCAGGCCAAACCATGATGACCATCGGTGGTATTTTGACCGCAC
GCATGTGGATTTACTGCAACGATCCCCGGTTGACTCGAGAGACACCGGAA
ATACTGGCGATATCGGAAGCGCTAGAACGGCCGACGGGGTTCTTTGCGTC
CAACACTGCGATGTGTGTAGGCCCTGCCATTGCAACTGCCCTAGCAGCGG
CTAAGAGTTTACAAGCGGCTGGTAAGGTCTCCGCGGTAGCATTTCTGGGT
TTGATCGTATTCTGCGACTTCATCATCTTGAAGAGCGGTGCTGCCCTTTT
GCGAACTGTGAACAGATCGTTGCGGAACAGCATGGAGCGTTCCGAGAGGA
GCAACAGCATAGTGGCAGGAACGGTAGGATCGCTACAGCTCTTGAAAGCA
GCTAGGAAGAATATCAAGTTTGCGTTGTGTTTTTGCGTCGTTGTGTCCCT
GTTGACCGCGTTTTTCATTATCGGCCTTTTCACGACCTATGGAGCGACAG
CACCGTTGATCTTTTTCGGCATTCCGTATGGATGCTCACCTCCCGTATGG
TTCGTTTTCAACGTCCAGCTGCACGCAGGGAGGAGCAGGAGTCGTACCCA
CCCGATGTCGTTTCAGGCGCTAGCAGCGTAA
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