prot_Ecto-sp13_S_contig10266.282.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig10266.282.1
Unique Nameprot_Ecto-sp13_S_contig10266.282.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length378
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10266.282.1 vs. uniprot
Match: A0A6H5JUF7_9PHAE (GCFC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUF7_9PHAE)

HSP 1 Score: 540 bits (1391), Expect = 5.010e-182
Identity = 348/374 (93.05%), Postives = 352/374 (94.12%), Query Frame = 0 
Query:    1 MFKTRKKDPRRRLASKSKTAEDGASEDEAGNVSDASVGTAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLSFGHXXXXXXXXXXXKAAAGKGVDGVFRVKKSKASKAMAKAAKEKTELPVAPQNDSARGSWHTATAGMYTKEGLAELRSSQAFTPKPSGGRSRERMTRGGNSSNGGEETASGAANERVFAGDEAEMIHEAGQQGDLKEDLNKNDISRLKGRHEALIASREGMGKGAPDSGDGEDFIPLDAKAPVSGATKGLSHDDVNGDGGREXXXXXXXXXXXQVRRGATRPAAKPKPSIPSTSPWGGGSTVATVNXXXXTAASGWGGTPAERPRFLGIDEMQKALREAGTHLRETHERNERQLQVV 374
            MFKTRKKDPRRRLASKSKTAEDGASEDEAGNVSDASVGTAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VLSFGHXXXXXXXXXXX AAAGKG DG FRVKKSKASKAMAKAAKEKTELPVAPQN+SARGSWHTATAGMYTKEGLAELRSSQAFTPKPSGGRSRERMTRGGNSSNGGEETAS AANERVFAGDEAEMIHEAGQQGDLKEDLNKNDISRLKGRHEAL+ASRE MGKGAPDSGDGEDFIPLDAKAPV GA KGL+HD VNGDGGRE XXXXXX    QVRRGATRPAAKPKPSIPSTSPWGGGSTVATVN    TA SGWG TP ERPRFLGIDEMQKALREAGT LRETHERNERQLQV+
Sbjct:    1 MFKTRKKDPRRRLASKSKTAEDGASEDEAGNVSDASVGTAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVLSFGHXXXXXXXXXXXXAAAGKGADGFFRVKKSKASKAMAKAAKEKTELPVAPQNNSARGSWHTATAGMYTKEGLAELRSSQAFTPKPSGGRSRERMTRGGNSSNGGEETASAAANERVFAGDEAEMIHEAGQQGDLKEDLNKNDISRLKGRHEALLASREAMGKGAPDSGDGEDFIPLDAKAPVPGARKGLTHDVVNGDGGREDXXXXXXWEEEQVRRGATRPAAKPKPSIPSTSPWGGGSTVATVNVGGGTAGSGWGETPGERPRFLGIDEMQKALREAGTQLRETHERNERQLQVL 374
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10266.282.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JUF7_9PHAE5.010e-18293.05GCFC domain-containing protein n=2 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012890GC-rich sequence DNA-binding factorPANTHERPTHR12214GC-RICH SEQUENCE DNA-BINDING FACTORcoord: 1..373

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10266contigEcto-sp13_S_contig10266:883..5187 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10266.282.1mRNA_Ecto-sp13_S_contig10266.282.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig10266 883..5187 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig10266.282.1 ID=prot_Ecto-sp13_S_contig10266.282.1|Name=mRNA_Ecto-sp13_S_contig10266.282.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=378bp
MFKTRKKDPRRRLASKSKTAEDGASEDEAGNVSDASVGTAPAPPLPAAAT
GDGQARPKKMRKKSKAKAEKEVKPVLSFGHEDEEDTGIGVGKAAAGKGVD
GVFRVKKSKASKAMAKAAKEKTELPVAPQNDSARGSWHTATAGMYTKEGL
AELRSSQAFTPKPSGGRSRERMTRGGNSSNGGEETASGAANERVFAGDEA
EMIHEAGQQGDLKEDLNKNDISRLKGRHEALIASREGMGKGAPDSGDGED
FIPLDAKAPVSGATKGLSHDDVNGDGGREDDEEQQRWEEEQVRRGATRPA
AKPKPSIPSTSPWGGGSTVATVNGGGGTAASGWGGTPAERPRFLGIDEMQ
KALREAGTHLRETHERNERQLQVVSWE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012890GCFC