mRNA_Ecto-sp13_S_contig10266.282.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig10266.282.1
Unique Name	mRNA_Ecto-sp13_S_contig10266.282.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig10266.282.1 vs. uniprot
Match: A0A6H5JUF7_9PHAE (GCFC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUF7_9PHAE)

HSP 1 Score: 540 bits (1391), Expect = 5.010e-182
Identity = 348/374 (93.05%), Postives = 352/374 (94.12%), Query Frame = 1

Query:    1 MFKTRKKDPRRRLASKSKTAEDGASEDEAGNVSDASVGTAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLSFGHXXXXXXXXXXXKAAAGKGVDGVFRVKKSKASKAMAKAAKEKTELPVAPQNDSARGSWHTATAGMYTKEGLAELRSSQAFTPKPSGGRSRERMTRGGNSSNGGEETASGAANERVFAGDEAEMIHEAGQQGDLKEDLNKNDISRLKGRHEALIASREGMGKGAPDSGDGEDFIPLDAKAPVSGATKGLSHDDVNGDGGREXXXXXXXXXXXQVRRGATRPAAKPKPSIPSTSPWGGGSTVATVNXXXXTAASGWGGTPAERPRFLGIDEMQKALREAGTHLRETHERNERQLQVV 1122
            MFKTRKKDPRRRLASKSKTAEDGASEDEAGNVSDASVGTAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VLSFGHXXXXXXXXXXX AAAGKG DG FRVKKSKASKAMAKAAKEKTELPVAPQN+SARGSWHTATAGMYTKEGLAELRSSQAFTPKPSGGRSRERMTRGGNSSNGGEETAS AANERVFAGDEAEMIHEAGQQGDLKEDLNKNDISRLKGRHEAL+ASRE MGKGAPDSGDGEDFIPLDAKAPV GA KGL+HD VNGDGGRE XXXXXX    QVRRGATRPAAKPKPSIPSTSPWGGGSTVATVN    TA SGWG TP ERPRFLGIDEMQKALREAGT LRETHERNERQLQV+
Sbjct:    1 MFKTRKKDPRRRLASKSKTAEDGASEDEAGNVSDASVGTAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVLSFGHXXXXXXXXXXXXAAAGKGADGFFRVKKSKASKAMAKAAKEKTELPVAPQNNSARGSWHTATAGMYTKEGLAELRSSQAFTPKPSGGRSRERMTRGGNSSNGGEETASAAANERVFAGDEAEMIHEAGQQGDLKEDLNKNDISRLKGRHEALLASREAMGKGAPDSGDGEDFIPLDAKAPVPGARKGLTHDVVNGDGGREDXXXXXXWEEEQVRRGATRPAAKPKPSIPSTSPWGGGSTVATVNVGGGTAGSGWGETPGERPRFLGIDEMQKALREAGTQLRETHERNERQLQVL 374

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig10266.282.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig10266.282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A6H5JUF7_9PHAE	5.010e-182	93.05	GCFC domain-containing protein n=2 Tax=Ectocarpus ...	[more]

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	521.2
Seed ortholog evalue	4.1e-145
Seed eggNOG ortholog	2880.D8LAU3
Preferred name	PAXBP1
Model size	1134
KEGG ko	ko:K09061,ko:K13211,ko:K17536,ko:K20476
KEGG Pathway	ko04013,map04013
Hectar predicted targeting category	other localisation
GOs	GO:0000122,GO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001078,GO:0001227,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006417,GO:0006725,GO:0006807,GO:0007049,GO:0008134,GO:0008150,GO:0008152,GO:0008284,GO:0008380,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010638,GO:0014842,GO:0014857,GO:0016043,GO:0016070,GO:0016071,GO:0017148,GO:0019219,GO:0019222,GO:0022402,GO:0022607,GO:0022613,GO:0022618,GO:0030371,GO:0031056,GO:0031058,GO:0031060,GO:0031062,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032270,GO:0032991,GO:0033043,GO:0033044,GO:0034248,GO:0034249,GO:0034622,GO:0034641,GO:0034645,GO:0042023,GO:0042127,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044786,GO:0045182,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071008,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0140110,GO:1901360,GO:1901363,GO:1901576,GO:1902275,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905269,GO:1990837,GO:1990904,GO:2000112,GO:2000113,GO:2000288,GO:2000291,GO:2001141,GO:2001252
Exons	5
EggNOG free text desc.	RNA polymerase II proximal promoter sequence-specific DNA binding
EggNOG OGs	KOG2136@1,KOG2136@2759
Ec32 ortholog description	GC-rich sequence DNA-binding factor
Ec32 ortholog	Ec-27_006370.1
Cds size	1134
COG Functional cat.	EGP
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01001,ko03000,ko03041,ko04131

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig10266:883..5187+
coding sequence from alignment at Ecto-sp13_S_contig10266:883..5187+

protein sequence of mRNA_Ecto-sp13_S_contig10266.282.1

>prot_Ecto-sp13_S_contig10266.282.1 ID=prot_Ecto-sp13_S_contig10266.282.1|Name=mRNA_Ecto-sp13_S_contig10266.282.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=378bp
MFKTRKKDPRRRLASKSKTAEDGASEDEAGNVSDASVGTAPAPPLPAAAT
GDGQARPKKMRKKSKAKAEKEVKPVLSFGHEDEEDTGIGVGKAAAGKGVD
GVFRVKKSKASKAMAKAAKEKTELPVAPQNDSARGSWHTATAGMYTKEGL
AELRSSQAFTPKPSGGRSRERMTRGGNSSNGGEETASGAANERVFAGDEA
EMIHEAGQQGDLKEDLNKNDISRLKGRHEALIASREGMGKGAPDSGDGED
FIPLDAKAPVSGATKGLSHDDVNGDGGREDDEEQQRWEEEQVRRGATRPA
AKPKPSIPSTSPWGGGSTVATVNGGGGTAASGWGGTPAERPRFLGIDEMQ
KALREAGTHLRETHERNERQLQVVSWE*

mRNA from alignment at Ecto-sp13_S_contig10266:883..5187+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig10266.282.1 ID=mRNA_Ecto-sp13_S_contig10266.282.1|Name=mRNA_Ecto-sp13_S_contig10266.282.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4305bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10266:883..5187+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCAAAACCAGGAAGAAAGACCCTCGGCGGCGCCTGGCGAGCAAGAG
CAAGACGGCGGAGGATGGTGCGAGCGAGGATGAAGCAGGGAACGTGTCGG
ACGCCAGCGTAGGCACGGCTCCCGCGCCGCCCCTACCCGCCGCCGCGACG
GGCGACGGGCAAGCCCGGCCGAAAAAGATGCGTAAGAAGTCGAAAGCGAA
GGCGGAAAAGGAGGTCAAGCCTGTGCTGAGCTTCGGCCACGAGGATGAGG
AGGATACCGGGATCGGGGTGGGCAAGGCTGCCGCAGGGAAGGGAGTCGAT
GGCGTCTTCCGAGTGAAGAAGAGCAAGGCCAGCAAGGTGCAGGCGGGGGT
ATCAGGGCATTTGCTTCCAAGGGGTACCATGTTTGCGAGGCGTTCTAGAA
GTTGCAGCAGTAGCCGGGGTCGGGGTGTTGTGGCCTCGTCTCCATGCCTG
CTGCTCGACCTGCAGGATATTGTCGCTGGTGCGTCCATTTGAATCCTATC
GTACGGCGACTGCATACCTCGCAGCGGGTTAAGGCCGCGATCAGTCGCCT
TTGCAGCAGACTTTTTATCTACTCTAGACGAGCAGACGAGCTCTGTGCAG
TGGAAATGCTTGTGTTTTTGAACACAAACACCTAGTCTAGTAGAGATAGC
AGATGCGCTTTGCAAGTCGCGTGCCCCCCATGCTGTGTATTTGGCGTATT
TCAGTGTTGTAATGAAATTCGGCAGCAGGTCCTTCGCAGTAACCAACAAT
CCTGTCCAGCTCCTTTTTTTGGTGAAACCAAGGTGTAGCATAGCCTGTAA
ACCTTGGGGCTTGCTCCCTCCCTTGGCGCAGAGCCTCGGCCACTTCTCGT
GTCTCATCTTTCTGGAATGATCGGTTTCCTCGCATCATGCTCCACGCGCT
GGAAGGTAGCGTACGCTGACTACTTCCAATAGACTTTTTTTATATGTACG
ACGCGCCGGTCGCGTGTACTGGACAGGGGGGTAAATGAGCCGCTGGTGAC
GACTCAAACCTTGCAGTAGTCTGTCTGCGGTGCTGTGCCGCGAGACACGC
TGCTTCCAGGCAGCAACTCAGCTTGTAGGCAGCAACGCATCAACCCGGAC
CGCGCAATCCAATTTCTCGCGGAATTATTTTATACGAACGGATCTTCCAC
AACCATGTACCAGTTCCCCCTGGAAGTTTGCTGCATATCAACGGCGGAGG
AACACGAACACCTACTCGCCTTTGCTACAACGCTACAACAACAACGGTAC
CGCCAAACGATTGTCACATAACAGTACTGACACAGACACAATTACACAGT
GACAGTTTACACGAACATATGTAGTGCTGCTGCTGCTGCTGTTATGGCAA
TGACTCCTACCTCATCCACCTTTCTTGTTCGGCAGTGCATGTGTGCGCCT
TCCCTAGAGGCTCTCTTCTTGTACATTTTTTGTCCTTGGGAGCTTGACAC
AGCAGCTAGTTTTCTTTTCAGGTGACCCCTGCTGCCCACGCACCGAAGCG
ACAGCTCGACAAACGTATCCGCCACGTGCTGTGTGTATGACTCCCTCCCC
TCGCCAGTGCTGTCTGCCCCTCCTAGCAGTGTTACGTGTTTAGCTGGGTG
CTTTCGCTGCCTCTCCTGGTTTGAACCGAGCAACTGCTGTTTTTGCGTGT
GTATGTTCCTTTTCCTCTTGTCCAACTCTTGGGGACGAGGGCAAGAACCG
CTTCGCGCTTCGCGGCTCATTATAAATAAGTTCCACCGCCAAGGTGGCGC
GAAGAGGGACCAGGGCTGCTGTATTCGTAATTTCTTTCCTACCAGTGCTT
TCTGCACAGCACTAGTGACCTTTTTGTACGACTGCGTCAAGTCTCACACT
GCGGCGGCGTCTGCGACTTCCTTACCACCGTTATCCACTTATTTTACCAA
GAACATCGTGAAACTGTCTCCACCGCGACTCCTTACCCAAGTCCTCCTCA
TCCTTACCTACAAACCAGGCGATGGCCAAAGCCGCCAAAGAGAAAACGGA
GCTCCCCGTCGCCCCGCAGAACGACTCCGCGCGGGGCTCCTGGCACACCG
CAACCGCTGGCATGTACACCAAGGAGGGCCTCGCAGAGCTTCGCAGTAGC
CAGGCCTTCACGCCCAAGCCCTCGGGGGGTAGGTCGCGCGAGAGGATGAC
GAGGGGCGGCAACAGCAGCAACGGGGGCGAGGAAACCGCCTCAGGGGCGG
CGAACGAGCGAGTATTTGCTGGGGACGAGGCGGAAATGATCCACGAGGCG
GGGCAGCAGGGGGACCTGAAAGAGGTGAGGGATCGGACCTTGGCAGCCGT
CCAAGGATGAGGGTGTCTGGCTTTTGTTAATTGTTTGGTTTATTGTTTAG
CGTCGAATTACAGGCTGTTCTGGCAGCCAACGGGTGCGGCGGGGTGAACG
TGCAGTACAAGCGCTTGCGTACCTGCTGCGTCGCCTCGTCTCCTTGTTCA
TGTAGCCCACGGTTGCTGCTGCCAAAGCCGGCGCGGACGTCCTTCGGTTG
GAGTCGTCGTTGTTGCAGATGCTGCGGCTGCCGCCACTTCCAGCTGATGA
TACGCTTGTTCGTTGCGTTGTTTTTGTCGTTGCAGGATTTGAACAAGAAT
GACATTTCGCGCCTCAAGGGCAGACACGAGGCGTTAATAGCCTCTAGGGA
GGGTATGGGAAAAGGTGCACCTGACAGCGGTGATGGCGAGGATTTTATCC
CTCTTGACGCGAAGGTACGGATGACAATAGTTTGGCAGCAAGTTGAACTC
GTAGGCAGGAAGTCACCATACTCAATATTTCTGGCGAAGTCACTCAATCC
GTTGTAGTTTTCACAGACGCAGTGACGAGAGGTACCGACAAAAACATGTT
GGACCTTCGCGTCCCGCCTTTGTGACGATTTTGAGACATAGGTGAAGAGG
GTTTTCCATGAAGTGCTGTTGGGGAAGAGTGTTCGGCATTGTTCAAGGCC
GACAACTTTCTTCCGAAGCTTTGCGACGACTAAACAGAGTGCCCAAGGCC
AACCCCATCTTGCGACTTCATTGGAGTGGGAGAAAAATAAAAAATCCCGC
ACATCCTCTCCTACCCAGATTGCACTCCGTGTTTTTATTTTTAGCATGAT
ACCGAATGTGATCCACAGCGTTCGTGACGTACGTTAGCCGAGCCTTCGCC
CTCTTCTTATGAGCGACGTTTGCGTATTTAGCTGTCTTTCCTCCTTATGC
AAGTGTCAACCCTCCCTCGGTCATCCGTACTGAAAATCACTGAAGTCCGT
TCCGCACGTTCATTTTCGGATCTGTTGTTTGCGACAGGCCCCTGTCTCAG
GTGCGACAAAGGGCTTGTCACACGATGATGTCAATGGCGACGGTGGGCGG
GAAGACGATGAAGAGCAGCAGAGGTACCCGCATTAGTCTTGTGTACGTTA
CAGCTGATGCCTGACACCCTCGCCTTTTGCAGGGTTGGTGGTTTCCCCAC
GTTGGTTTTGCTTCTGTCGTGTGTGTGTTTTCACTCCAAATGGGCAAGGG
AATGAGCGGAGCGGGTTTGGTGTGTGCGTGTGAGTGTGGGTGGGTGGGTG
GGTGGGTCGACGGTTGCGTCTGGTTCGTTGTGAAGTATCCCTCAGCGTGG
TTTGTCAACACTTGTAGATGCGGCATCCCTCAGGGTGGTTTGTCAACACA
TCCCTCAGCGTGGTTTGTCAACACTCATAGATGCGGCAGCTCCCTTCGGT
ACCAGTGAAACTAGAACTGAGGCGCTCTCTTTCTCCTTGCAGTGTTGCTG
TGTTTTTGCTGCTGTTTTCTCCACTAGTCTAAGTGTGTCTTCGAAACCTA
AGGTTGTCTTCGAAACCTGACAACCGCAGCAGATTTGAATGTAGCACGGC
CGTCTATCTCGCTCGACCTCTGCAGTACACGAAGGATGGTGCCCCTTGCA
TCTGTTTGCGACTTCAGACGGCAACACAAGGTTTACAACATGGTTCGCTG
TGCCGCCCACTCTCTTACAAATGCGTCTCGACCGTATGGAACGGACCTCG
TGGTGCATTACCTCGATCACCTGTGCAGATGGGAAGAGGAGCAAGTTCGG
CGGGGGGCGACCCGACCGGCCGCTAAGCCGAAGCCCTCCATTCCGTCGAC
TTCGCCTTGGGGCGGCGGTAGTACCGTCGCTACAGTAAACGGCGGAGGCG
GTACCGCTGCCAGCGGCTGGGGAGGGACGCCGGCAGAGCGTCCCCGTTTC
TTGGGCATAGACGAGATGCAGAAGGCTCTTAGAGAAGCCGGGACACATCT
GCGGGAGACGCACGAGAGGAATGAGCGGCAGTTACAAGTGGTGAGCTGGG
AGTAA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10266:883..5187+

>mRNA_Ecto-sp13_S_contig10266.282.1 ID=mRNA_Ecto-sp13_S_contig10266.282.1|Name=mRNA_Ecto-sp13_S_contig10266.282.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1134bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10266:883..5187+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCAAAACCAGGAAGAAAGACCCTCGGCGGCGCCTGGCGAGCAAGAG
CAAGACGGCGGAGGATGGTGCGAGCGAGGATGAAGCAGGGAACGTGTCGG
ACGCCAGCGTAGGCACGGCTCCCGCGCCGCCCCTACCCGCCGCCGCGACG
GGCGACGGGCAAGCCCGGCCGAAAAAGATGCGTAAGAAGTCGAAAGCGAA
GGCGGAAAAGGAGGTCAAGCCTGTGCTGAGCTTCGGCCACGAGGATGAGG
AGGATACCGGGATCGGGGTGGGCAAGGCTGCCGCAGGGAAGGGAGTCGAT
GGCGTCTTCCGAGTGAAGAAGAGCAAGGCCAGCAAGGCGATGGCCAAAGC
CGCCAAAGAGAAAACGGAGCTCCCCGTCGCCCCGCAGAACGACTCCGCGC
GGGGCTCCTGGCACACCGCAACCGCTGGCATGTACACCAAGGAGGGCCTC
GCAGAGCTTCGCAGTAGCCAGGCCTTCACGCCCAAGCCCTCGGGGGGTAG
GTCGCGCGAGAGGATGACGAGGGGCGGCAACAGCAGCAACGGGGGCGAGG
AAACCGCCTCAGGGGCGGCGAACGAGCGAGTATTTGCTGGGGACGAGGCG
GAAATGATCCACGAGGCGGGGCAGCAGGGGGACCTGAAAGAGGATTTGAA
CAAGAATGACATTTCGCGCCTCAAGGGCAGACACGAGGCGTTAATAGCCT
CTAGGGAGGGTATGGGAAAAGGTGCACCTGACAGCGGTGATGGCGAGGAT
TTTATCCCTCTTGACGCGAAGGCCCCTGTCTCAGGTGCGACAAAGGGCTT
GTCACACGATGATGTCAATGGCGACGGTGGGCGGGAAGACGATGAAGAGC
AGCAGAGATGGGAAGAGGAGCAAGTTCGGCGGGGGGCGACCCGACCGGCC
GCTAAGCCGAAGCCCTCCATTCCGTCGACTTCGCCTTGGGGCGGCGGTAG
TACCGTCGCTACAGTAAACGGCGGAGGCGGTACCGCTGCCAGCGGCTGGG
GAGGGACGCCGGCAGAGCGTCCCCGTTTCTTGGGCATAGACGAGATGCAG
AAGGCTCTTAGAGAAGCCGGGACACATCTGCGGGAGACGCACGAGAGGAA
TGAGCGGCAGTTACAAGTGGTGAGCTGGGAGTAA