mRNA_Ecto-sp13_S_contig13556.2820.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13556.2820.1
Unique NamemRNA_Ecto-sp13_S_contig13556.2820.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13556.2820.1 vs. uniprot
Match: A0A6H5KXC5_9PHAE (Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXC5_9PHAE)

HSP 1 Score: 455 bits (1170), Expect = 1.870e-156
Identity = 237/246 (96.34%), Postives = 241/246 (97.97%), Query Frame = 1
Query:    1 LGGVQMGVIREALVERVQPDVAAAVKEAIDTMASLGAEVTEVSLPSLPEQCAAYYVTALSEASANLARFDGIRYGQRNSEATSSKEAMLKSRHDGFGAEVRQRIILGTFSLSSGYSDKYYKRAQAIREGLSRDFSTVFERLDVLVCPTAPTTAYRLGEYAEKGVGVYADDVFTTPASLAGLPGLSVPCGQDRAGLPIGVQLMGKSLSEDLLLRVGQAYESATPWHRQFAPGVSASSPPAAVPTEAA 738
            L G++MGVIREALVERVQPDVAAAVKEAIDTMASLGA+VTEVSLPSLPEQCAAYYVTALSEASANLARFDGIRYGQRNSEATSSKEAMLKSRHDGFGAEVRQRIILGTFSLSSGYSDKYYKRAQAIREGLSRDFSTVFE+LDVLVCPTAPTTAYRLGEYAEKGVGVYADDVFTTPASLAGLPGLSVPCGQDRAGLPIGVQLMGK LSEDLLLRVGQAYESATPWHRQFAPGVSASSP AAVP  AA
Sbjct:  317 LEGIKMGVIREALVERVQPDVAAAVKEAIDTMASLGADVTEVSLPSLPEQCAAYYVTALSEASANLARFDGIRYGQRNSEATSSKEAMLKSRHDGFGAEVRQRIILGTFSLSSGYSDKYYKRAQAIREGLSRDFSTVFEKLDVLVCPTAPTTAYRLGEYAEKGVGVYADDVFTTPASLAGLPGLSVPCGQDRAGLPIGVQLMGKPLSEDLLLRVGQAYESATPWHRQFAPGVSASSPAAAVPAGAA 562          
BLAST of mRNA_Ecto-sp13_S_contig13556.2820.1 vs. uniprot
Match: D8LTD4_ECTSI (Glutamyl-tRNA amidotransferase, subunit A, c-terminal region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTD4_ECTSI)

HSP 1 Score: 327 bits (838), Expect = 1.110e-110
Identity = 167/174 (95.98%), Postives = 169/174 (97.13%), Query Frame = 1
Query:  217 RYGQRNSEATSSKEAMLKSRHDGFGAEVRQRIILGTFSLSSGYSDKYYKRAQAIREGLSRDFSTVFERLDVLVCPTAPTTAYRLGEYAEKGVGVYADDVFTTPASLAGLPGLSVPCGQDRAGLPIGVQLMGKSLSEDLLLRVGQAYESATPWHRQFAPGVSASSPPAAVPTEAA 738
            R  QRNSEATSSKEAMLKSRHDGFGAEVRQRIILGTFSLSSGYSDKYYKRAQAIREGLSRDFSTVFE+LDVLVCPTAPTTAYRLGEYAEKGVGVYADDVFTTPASLAGLPGLSVPCGQDRAGLPIGVQLMG+SLSEDLLLRVGQAYESATPWHRQFAPGVSASSP AAVP  AA
Sbjct:   70 RCRQRNSEATSSKEAMLKSRHDGFGAEVRQRIILGTFSLSSGYSDKYYKRAQAIREGLSRDFSTVFEKLDVLVCPTAPTTAYRLGEYAEKGVGVYADDVFTTPASLAGLPGLSVPCGQDRAGLPIGVQLMGQSLSEDLLLRVGQAYESATPWHRQFAPGVSASSPAAAVPAGAA 243          
BLAST of mRNA_Ecto-sp13_S_contig13556.2820.1 vs. uniprot
Match: A0A836CQP8_9STRA (Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQP8_9STRA)

HSP 1 Score: 292 bits (747), Expect = 3.370e-93
Identity = 146/233 (62.66%), Postives = 182/233 (78.11%), Query Frame = 1
Query:    1 LGGVQMGVIREALVER-VQPDVAAAVKEAIDTMASLGAEVTEVSLPSLPEQCAAYYVTALSEASANLARFDGIRYGQRNSEATSSKEAMLKSRHDGFGAEVRQRIILGTFSLSSGYSDKYYKRAQAIREGLSRDFSTVFERLDVLVCPTAPTTAYRLGEYAEKGVGVYADDVFTTPASLAGLPGLSVPCGQDRAGLPIGVQLMGKSLSEDLLLRVGQAYESATPWHRQFAPGV 696
            L G+++G+I EAL    V P+VAAA + A D +A+LGA + +VSLP LP+QCAAYYV ALSEASANLARFDG+RYG R  +A S++ ++L++RHDGFGAEVRQRI+LGTFSLS+GY+D YY RAQA+R GL  DF+  F   DVL+CPTAPTTAYRLG++  KGV  YADD+FT PASLAGLP LS+PCG D AGLPIGVQL+G +  E+ L+R   AYE +T W  +  PG+
Sbjct:  280 LEGLRVGLISEALTAGGVAPEVAAAARAAADALAALGARIADVSLPRLPQQCAAYYVNALSEASANLARFDGVRYGARARDAASARASLLRTRHDGFGAEVRQRILLGTFSLSAGYADAYYARAQAVRAGLRTDFARAFAGADVLLCPTAPTTAYRLGDFEAKGVASYADDLFTVPASLAGLPALSLPCGVDAAGLPIGVQLIGGAWQEEALVRAAYAYERSTDWRARLPPGL 512          
BLAST of mRNA_Ecto-sp13_S_contig13556.2820.1 vs. uniprot
Match: A0A0G4GTE2_VITBC (Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GTE2_VITBC)

HSP 1 Score: 241 bits (615), Expect = 8.990e-73
Identity = 123/228 (53.95%), Postives = 166/228 (72.81%), Query Frame = 1
Query:    1 LGGVQMGVIREALVE---RVQPDVAAAVKEAIDTMASLGAEVTEVSLPSLPEQCAAYYVTALSEASANLARFDGIRYGQR-NSEATSSKEAMLKSRHDGFGAEVRQRIILGTFSLSSGYSDKYYKRAQAIREGLSRDFSTVFERLDVLVCPTAPTTAYRLGEYAEKGVGVYADDVFTTPASLAGLPGLSVPCGQDRAGLPIGVQLMGKSLSEDLLLRVGQAYESATPW 672
            L  +++G+++E L +   R+QP V AA K+++    +LGAE+ EV +P+L E CAAYY+T +SEAS+NLA++DGIRYG R +SE   +K  M+ SR  GFG EV+QRI+LGTF+LS+GYSD YYK+AQ +R  L+ +F  VFE +D L+ PTAPTTAYRLG++ E  V  Y DD+ T PASL+GLP LSVPCG     LPIG+Q++GK L E  LL++G  Y+ AT W
Sbjct:  314 LSKMRIGLLKETLDDGEGRMQPAVMAAFKDSLSVFKALGAELIEVDIPNLKEYCAAYYITVMSEASSNLAKYDGIRYGLRTSSEDPRAKRVMVDSRETGFGQEVKQRILLGTFALSAGYSDAYYKKAQKMRAALASNFERVFELVDALILPTAPTTAYRLGQFKENKVETYIDDLLTVPASLSGLPALSVPCGISAEDLPIGLQIVGKPLDELRLLQIGAGYDEATGW 541          
BLAST of mRNA_Ecto-sp13_S_contig13556.2820.1 vs. uniprot
Match: A0A497A706_9CHLR (Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A497A706_9CHLR)

HSP 1 Score: 238 bits (608), Expect = 1.050e-72
Identity = 118/223 (52.91%), Postives = 160/223 (71.75%), Query Frame = 1
Query:    7 GVQMGVIREALVERVQPDVAAAVKEAIDTMASLGAEVTEVSLPSLPEQCAAYYVTALSEASANLARFDGIRYGQRNSEATSSKEAMLKSRHDGFGAEVRQRIILGTFSLSSGYSDKYYKRAQAIREGLSRDFSTVFERLDVLVCPTAPTTAYRLGEYAEKGVGVYADDVFTTPASLAGLPGLSVPCGQDRAGLPIGVQLMGKSLSEDLLLRVGQAYESATPWH 675
            G+++GV RE  +E +QP+V  AV+ AID +A +GAE+ ++SLP        YY+ A +EASANLAR+DG++YG    +AT   +A  K+R  GFGAEV++RI+LGT++LS+GY D YY +AQ +R  + +DF   FE  DV+VCPTAPTTA+++GE A   + +Y  DVFT  ASLAGLPGLS+PCG D  GLPIG+Q+MG++  E  +LRV  AYE AT WH
Sbjct:  257 GMRLGVPREYFIEGMQPEVETAVRAAIDLLAEMGAEIVDISLPHTEHALPVYYIIAPAEASANLARYDGVKYGFSFPDATDVWDAYRKTRQYGFGAEVKRRIMLGTYALSAGYYDAYYLKAQQVRTLIKQDFDRAFELCDVIVCPTAPTTAFKIGEKANDPLQMYLSDVFTLSASLAGLPGLSLPCGFDGEGLPIGLQIMGQTFDEPTVLRVAYAYEQATDWH 479          
BLAST of mRNA_Ecto-sp13_S_contig13556.2820.1 vs. uniprot
Match: I0I1L9_CALAS (Glutamyl-tRNA(Gln) amidotransferase subunit A n=2 Tax=Caldilinea aerophila TaxID=133453 RepID=I0I1L9_CALAS)

HSP 1 Score: 233 bits (594), Expect = 1.460e-70
Identity = 119/228 (52.19%), Postives = 162/228 (71.05%), Query Frame = 1
Query:    7 GVQMGVIREALVERVQPDVAAAVKEAIDTMASLGAEVTEVSLPSLPEQCAAYYVTALSEASANLARFDGIRYGQRNSEATSSKEAMLKSRHDGFGAEVRQRIILGTFSLSSGYSDKYYKRAQAIREGLSRDFSTVFERLDVLVCPTAPTTAYRLGEYAEKGVGVYADDVFTTPASLAGLPGLSVPCGQDRAGLPIGVQLMGKSLSEDLLLRVGQAYESATPWHRQFAP 690
            G+++G+  E  +  VQP+V AAV+ AI+ +  LGA+V  +SLP+  +    YY+ A +EASANLARFDG+RYG  ++ A S  E   +SR  GFGAEV++RI+LGT++LS+GY D YY +AQ +R  + +DF   FE++DV+  P APTTA+RLGE  +  + +Y  DVFT   +LAG+ G+SVPCG DR GLPIG+QLMG  L E+++LRV  AYE AT WHRQ AP
Sbjct:  259 GLRIGLPEEYFIAGVQPEVEAAVRRAIEVLVDLGADVRPISLPNTDKALPVYYLVATAEASANLARFDGVRYGY-SAGADSILENYRQSRGRGFGAEVKRRIMLGTYALSAGYYDAYYLKAQQVRTLIKQDFERAFEQVDVIASPVAPTTAFRLGEKTDDPLAMYLSDVFTITLNLAGMCGISVPCGFDRQGLPIGLQLMGPHLGEEIVLRVAHAYEQATQWHRQHAP 485          
BLAST of mRNA_Ecto-sp13_S_contig13556.2820.1 vs. uniprot
Match: A0A0N7Z4L9_9CYAN (Glutamyl-tRNA(Gln) amidotransferase subunit A n=8 Tax=Cyanobacteria TaxID=1117 RepID=A0A0N7Z4L9_9CYAN)

HSP 1 Score: 233 bits (593), Expect = 1.820e-70
Identity = 115/225 (51.11%), Postives = 160/225 (71.11%), Query Frame = 1
Query:    1 LGGVQMGVIREALVERVQPDVAAAVKEAIDTMASLGAEVTEVSLPSLPEQCAAYYVTALSEASANLARFDGIRYGQRNSEATSSKEAMLKSRHDGFGAEVRQRIILGTFSLSSGYSDKYYKRAQAIREGLSRDFSTVFERLDVLVCPTAPTTAYRLGEYAEKGVGVYADDVFTTPASLAGLPGLSVPCGQDRAGLPIGVQLMGKSLSEDLLLRVGQAYESATPWH 675
            L G ++G+I+E   E + P+V  AV+ AID + +LGAEV E+S P      AAYY+ A SEASANLAR+DG++YG R  EA +  E   K+R  GFGAEV++RI++GT++LS+GY D YY +AQ +R  + +DF   FE++DVLV PTAPTTA++LG+ ++  + +Y  D+ T P +LAGLPG+SVPCG D  GLPIG+Q++G  L ED + +V  AYE +T WH
Sbjct:  252 LKGKRVGIIKETFGEGLDPEVEKAVRSAIDQLKALGAEVKEISCPRFRYGIAAYYIIAPSEASANLARYDGVKYGARIEEAENLMEMYTKTRSQGFGAEVKRRIMIGTYALSAGYYDAYYLKAQKVRTLIKQDFEAAFEQVDVLVSPTAPTTAFKLGDKSQDPLSMYLIDLMTIPVNLAGLPGMSVPCGFDSQGLPIGLQIIGNVLREDQIFQVASAYERSTDWH 476          
BLAST of mRNA_Ecto-sp13_S_contig13556.2820.1 vs. uniprot
Match: A0A3M9ZB13_9CYAN (Glutamyl-tRNA(Gln) amidotransferase subunit A n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A3M9ZB13_9CYAN)

HSP 1 Score: 233 bits (593), Expect = 1.860e-70
Identity = 115/226 (50.88%), Postives = 159/226 (70.35%), Query Frame = 1
Query:   13 QMGVIREALVERVQPDVAAAVKEAIDTMASLGAEVTEVSLPSLPEQCAAYYVTALSEASANLARFDGIRYGQRNSEATSSKEAMLKSRHDGFGAEVRQRIILGTFSLSSGYSDKYYKRAQAIREGLSRDFSTVFERLDVLVCPTAPTTAYRLGEYAEKGVGVYADDVFTTPASLAGLPGLSVPCGQDRAGLPIGVQLMGKSLSEDLLLRVGQAYESATPWHRQFAP 690
            ++GVI+E   E V P +  AV++AI+   +LGAEV E+S P      AAYY+ A SEASANLAR+DG++YG R  +A +  E   K+R  GFG EV++RI++GT++LS+GY D YY +AQ +R  + +DF   F ++DVLVCPT+PTTA++ GE  +  +G+Y  D+ T P +LAGLPGLS+PCG D  GLPIG+Q++G  L EDL+L+   AYE AT WH+Q  P
Sbjct:  260 RIGVIKETFGEGVDPAIEKAVRQAIEQFKALGAEVQEISCPQFRYGVAAYYIIAPSEASANLARYDGVKYGFRVEDAENLMEMYTKTRAQGFGPEVKRRIMIGTYTLSAGYYDAYYLKAQKVRTLIKQDFENAFAKVDVLVCPTSPTTAFKTGEKKDDPLGMYLLDLMTIPVNLAGLPGLSLPCGFDNKGLPIGLQIIGNVLREDLVLQAAYAYEQATDWHKQTPP 485          
BLAST of mRNA_Ecto-sp13_S_contig13556.2820.1 vs. uniprot
Match: A0A7C6ZSK4_9CHLR (Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C6ZSK4_9CHLR)

HSP 1 Score: 233 bits (593), Expect = 2.100e-70
Identity = 117/231 (50.65%), Postives = 163/231 (70.56%), Query Frame = 1
Query:    7 GVQMGVIREALVERVQPDVAAAVKEAIDTMASLGAEVTEVSLPSLPEQCAAYYVTALSEASANLARFDGIRYGQRNSEATSSKEAMLKSRHDGFGAEVRQRIILGTFSLSSGYSDKYYKRAQAIREGLSRDFSTVFERLDVLVCPTAPTTAYRLGEYAEKGVGVYADDVFTTPASLAGLPGLSVPCGQDRAGLPIGVQLMGKSLSEDLLLRVGQAYESATPWHRQFAPGVS 699
            G+++G+ +E  +  VQP+V AAV+ AIDT+A +GAEV  +SLP+  +    YY+ A +EASANLARFDG+RYG  ++ A S  E    +R  GFGAEV++RI+LG ++LS+GY D YY +AQ +R  + +DF   FE +DV+ CP APTTA+R+GE A+  + +Y  DVFT   +LAG+ G+SVPCG DR GLPIG+Q+MG  L E+++LR   AYE AT WH  +A  V+
Sbjct:  259 GLRIGLPQEYFISGVQPEVEAAVRTAIDTLADMGAEVVPISLPNTDKALPVYYLVATAEASANLARFDGVRYGY-SAGADSILENYRATRGQGFGAEVKRRIMLGAYALSAGYYDAYYLKAQQVRTLIKQDFERAFEHVDVIACPVAPTTAFRIGEKADDPLAMYLSDVFTITLNLAGMCGISVPCGFDRVGLPIGLQIMGPHLGEEVVLRAAHAYEQATTWHTHWAQPVA 488          
BLAST of mRNA_Ecto-sp13_S_contig13556.2820.1 vs. uniprot
Match: A0A7V4LR52_9BACT (Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A7V4LR52_9BACT)

HSP 1 Score: 229 bits (585), Expect = 2.800e-70
Identity = 118/224 (52.68%), Postives = 152/224 (67.86%), Query Frame = 1
Query:    7 GVQMGVIREALVERVQPDVAAAVKEAIDTMASLGAEVTEVSLPSLPEQCAAYYVTALSEASANLARFDGIRYGQRNSEATSSKEAMLKSRHDGFGAEVRQRIILGTFSLSSGYSDKYYKRAQAIREGLSRDFSTVFERLDVLVCPTAPTTAYRLGEYAEKGVGVYADDVFTTPASLAGLPGLSVPCGQDRAGLPIGVQLMGKSLSEDLLLRVGQAYESATPWHR 678
            G++ GV +E LVE + P+V   V  A+DT++ LG E+TEVSLP  P   A YY+ A +EASANLARFDG+RYG R   A        ++R  GFG EV++RIILGT+ LSSGY D YY RAQ +R  + RDF   FE  DVL+ P APT AYRLGE  +  + +Y  D++T P +LAG+  LSVPCG    GLP+G+Q++G +L E +LL+VG AYE AT WHR
Sbjct:  166 GLRAGVPQEFLVEGLDPEVRRQVLAAVDTVSRLGVEITEVSLPHAPLAIATYYILAPAEASANLARFDGVRYGLRAPGAADVMTMYCRTRAQGFGKEVKRRIILGTYVLSSGYHDAYYLRAQKVRTLIRRDFERAFESCDVLLAPVAPTAAYRLGELQDDPLKMYLGDIYTVPVNLAGICALSVPCGFTAGGLPVGLQIIGPALGEAVLLQVGHAYEQATEWHR 389          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13556.2820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXC5_9PHAE1.870e-15696.34Glutamyl-tRNA(Gln) amidotransferase subunit A, mit... [more]
D8LTD4_ECTSI1.110e-11095.98Glutamyl-tRNA amidotransferase, subunit A, c-termi... [more]
A0A836CQP8_9STRA3.370e-9362.66Glutamyl-tRNA(Gln) amidotransferase subunit A, mit... [more]
A0A0G4GTE2_VITBC8.990e-7353.95Glutamyl-tRNA(Gln) amidotransferase subunit A, mit... [more]
A0A497A706_9CHLR1.050e-7252.91Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 ... [more]
I0I1L9_CALAS1.460e-7052.19Glutamyl-tRNA(Gln) amidotransferase subunit A n=2 ... [more]
A0A0N7Z4L9_9CYAN1.820e-7051.11Glutamyl-tRNA(Gln) amidotransferase subunit A n=8 ... [more]
A0A3M9ZB13_9CYAN1.860e-7050.88Glutamyl-tRNA(Gln) amidotransferase subunit A n=2 ... [more]
A0A7C6ZSK4_9CHLR2.100e-7050.65Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 ... [more]
A0A7V4LR52_9BACT2.800e-7052.68Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13556contigEcto-sp13_S_contig13556:286..4488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score327.4
Seed ortholog evalue5.6e-87
Seed eggNOG ortholog2880.D8LTD4
Model size741
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln)
EggNOG OGsCOG0154@1,KOG1211@2759
Cds size726
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13556.2820.1prot_Ecto-sp13_S_contig13556.2820.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13556 286..4473 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462724.0478547-CDS-Ecto-sp13_S_contig13556:285..4191681462724.0478547-CDS-Ecto-sp13_S_contig13556:285..419Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13556 286..419 -
1681462724.05865-CDS-Ecto-sp13_S_contig13556:693..8361681462724.05865-CDS-Ecto-sp13_S_contig13556:693..836Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13556 694..836 -
1681462724.0665576-CDS-Ecto-sp13_S_contig13556:1673..18401681462724.0665576-CDS-Ecto-sp13_S_contig13556:1673..1840Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13556 1674..1840 -
1681462724.0757525-CDS-Ecto-sp13_S_contig13556:2365..24381681462724.0757525-CDS-Ecto-sp13_S_contig13556:2365..2438Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13556 2366..2438 -
1681462724.0863647-CDS-Ecto-sp13_S_contig13556:3419..35531681462724.0863647-CDS-Ecto-sp13_S_contig13556:3419..3553Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13556 3420..3553 -
1681462724.0973217-CDS-Ecto-sp13_S_contig13556:4398..44731681462724.0973217-CDS-Ecto-sp13_S_contig13556:4398..4473Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13556 4399..4473 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462724.10613-UTR-Ecto-sp13_S_contig13556:4473..44881681462724.10613-UTR-Ecto-sp13_S_contig13556:4473..4488Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13556 4474..4488 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13556.2820.1

>prot_Ecto-sp13_S_contig13556.2820.1 ID=prot_Ecto-sp13_S_contig13556.2820.1|Name=mRNA_Ecto-sp13_S_contig13556.2820.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=242bp
MGVIREALVERVQPDVAAAVKEAIDTMASLGAEVTEVSLPSLPEQCAAYY
VTALSEASANLARFDGIRYGQRNSEATSSKEAMLKSRHDGFGAEVRQRII
LGTFSLSSGYSDKYYKRAQAIREGLSRDFSTVFERLDVLVCPTAPTTAYR
LGEYAEKGVGVYADDVFTTPASLAGLPGLSVPCGQDRAGLPIGVQLMGKS
LSEDLLLRVGQAYESATPWHRQFAPGVSASSPPAAVPTEAA*
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mRNA from alignment at Ecto-sp13_S_contig13556:286..4488-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13556.2820.1 ID=mRNA_Ecto-sp13_S_contig13556.2820.1|Name=mRNA_Ecto-sp13_S_contig13556.2820.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4203bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13556:286..4488- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGGGTGGCGTGCAGATGGGAGTGATTCGGGAAGCGCTAGTGGAGCGAGT CCAGCCGGACGTTGCCGCAGCTGTGAAAGAGGCTATCGACGTAAGCCCTT CAAAGGACGATTGCACTTTTTTTTTTTTTTGGTTTTGTGAAGTGCTTTTA GTCAGTAGAGGTTGTTTTGGATATCGGAAATACCTCGCGCCATGTGGTGC ATACCAGGTAGCAATGATGCCAAATGGGAAGAAGCCCGAACGGATCGACT CGTGTGTACCAGAAATCAGAGAGAGGTTTCTGTGTCTTGATCAAAATCTT CGAGCGTGAATATGTTGCCTGTGTTCCCGCAAAGCTCTGCCTACCGACGA TCCACAGCCCGTGGTTTTTCTCGGCAATCACTATATACAGGAATCTTGCG TGCGTCTTGAAAGTGCCCTTAGTGCCTTCTTTGCTTCGTCCACCCCACGC TGTGTTCTATAATAGATCGATGTGCAGCACGACACACCGCGATTGATTGT GTATCGCCTTGCCCCTTTGGACAATGACGCGAACGTAAAATGCCGATGAC ACTCGCGCTTGAAGTTTCACTAGCGAAAAGCTTTGCATTTGTTTATACTG GCGCTCCGGGTTGTTGATTGTCTCTGTGCGCATGGCTGAAGTGGCTTCGG GGCCAGCGTGCGTTGGGGTGCGTCCGCTGTACGGCGAATCCGATGAGTGG AAAGTGATGAACAGAGGAATGTGACTGGTTCAGTCGTATCAGTCATTTTG ATCCCCTCCTCAGTTCTCCTCCTCGATGCCTCCCCACTTTCCGGCACCCA TACCCTTTCCCCCTATCTATCTCCCTCTTCTCTCTCTCCTCCCCCCTCCA TTCCTCTGTTTTCTGTGCGTTCTCTCTTTTCTTTTACCAACCTCCTTGTG GTTACGACGATGATATTATGTTGATGGTCTGTCAGACGATGGCGTCCCTC GGGGCCGAGGTGACCGAGGTTTCCCTCCCGTCCCTCCCGGAGCAATGCGC CGCGTACTACGTCACCGCCCTGTCGGAGGCGTCGGCAAACCTTGCCAGAT TTGACGGGATACGATACGGGTGAGGGGAAAACCCTATTTTTACACCATAC CAGAAAAATAAGACACGTTTTGGTTGTGCCACGGTGTTTTGTTTCGCGTT ACTGTGGAATGTAAATATGTTGCTTGAGTTTAGAGGTAAACCACTCTTGT GTTGTACCACAGATTTAAACCAAGGCCGGGCCGCACGGGCCGTATTTTTT TTTTTAAGCGGTGAGAGGTTGCATGGCCAATACGAGGGAGACGTTTACAT ACAACGATAGACGTCGCCGAGCCAAGGTGACTGCAGCTTGTCTCTTCGAT GTTACAGCGGTTGCCTGATTTGTTTTGAGGCAGCTCTGGTCGTCCAGCCA TCGAACGCGTTACAAGTAAAGTAGGGTTGCGAACAACTTCAGAGTATACA GTACGTTGTCATTACATACATGCCTATGTACTTCTCCTTCAGGAGGTGCC CGCAAGCCATGGACGTTGCTACAGATATCTTCTTCCGTTGTCCACACCTC AAACTCGAGGCCATGTTTTCAGATTGTGGAGCGGTTGGGCTACTAGCAGA AGCACGTGCGCATGGAAACGTTGTTTTTAGAGGGGGACACTCCACCTCGT AGTATTTGCCATTATCGGTGTGGTTTGTGCCACGAAGTTTATTCGCAAAG CCACGCCCTTCAGCGCGCGTTCAACGAAGGAAACGAGCACGTCCCTGGCA CTTGCCAGCACTGGAATCGCGACGCTGGTGCTTCGTGTTTGCTTCGTATT TAGTACAAAGAACAACCCGATGACCTTGTCAATCACGTATGATACGGTTC CTGAACGCATCTTGGATTTGTCCTGGTAGAGCGTGGGAATATGAGGACGG TTGTATGGCCATACTTCTCGTCTGCTACCAGAATATTAGCGTCCGTCCCG TCGACTCCTTTTCTATTGTAGTTGGAGTCTTGTTTCTAGTTCAGCAAGAC GCACGTGTCTGTTCGTTGCCACGTTCGAAACGACACTTCCCACGCTGTAG GCAACGCAACTCCGAGGCAACTTCTTCCAAGGAAGCGATGCTCAAGAGCA GACACGACGGCTTCGGGGCAGAGGTGCGGACTACTGCACATAGCGTACAT GACGAACAAGCAGAGGGTGCTGAGGTGCTACTTGTCGCACCTTTTTGGTT GTGGGATGTACAACGCCGCTTGAAAGGAGTACTGTAACGTGTCGAATAGG TTCGCCGTCTCTATTGGAAGCGTCCTGCGAGAGAGAGGGGGGGAGGGGGG AGGGGGGGGGGGCAACGGCGTGTACCGTGGTGCGATCCGTCGTTTTCTTG TCTCCCGCGGTGAGATGGTGGGATATTGAAGGCCTGTTTGTGCCGAATGC GCTATTGTCGTATGTGTCAACCCCCACTTCCTTCATACGCAATCGCTGCC AAACATGATATGTACGTCTTCACAGCGTCGGAATCGTCGATCGTAGTACA AACCCTGATCGATGCGGCGTTTTTTGTAAGCCATCACTGTCAACCGTACG TTCATGTCGCGAACCAACCGCTGAATTGCTGCTAACATGGTGAGACCTAC ATGGCTGTTTGGGCGCTGTCTTCACCCGCAACGAACGACCACAAACAGGT TCGACAACGGATTATTCTAGGAACTTTCTCCCTATCTTCCGGGTATTCGG ACAAGTACTACAAGCGGGCGCAGGCGATTCGCGAGGGGCTTTCCCGCGAT TTTTCGACGGTTTTCGAGAGGCTGGACGTCCTTGTTTGTCCCACCGCGCC CACCACCGCGTACCGGTGAGAGAGGAATGGTTGGTTGATTGGTTGGATAT GGTACCAACGACCGGAGGGCTGTAGCTGCTGTGATCAGGGCCGACTAGCT CCATGTGTTCGTCCCATCCAATTCTGGCGGCAGTCTCAAGAGGAAGTGTT TTGCGCAACAACTGGCACAAGATTGCATTGCTGTCGTGTGCCTTGAGCCC GCAGTTCCGCCATGAGTCCTCTTGTAGATCGTCTCTCGCGGGAAGTCCAA CGCTTGGATAGCAATGATGAAGAAGCCGAAATACATGAATCGGTTGGGGT GAAGTTTGGATTGCCCGTGGATAAGACGATTTTGGAAACCCGCCGAACCA ACATCTGTCAGGTCGAAATTTTGGGAGCAAATAAATCGTTGTACTATACA TATCCCGTGCGGACGATGATGAGACCAATTTGCGTGAGATTTATGTTTTA AATTTTCGGAGGGGGGGGGAAGGGTTACCACGGCGCCGTTGATGGGCAAC GTTGTGGTGCCTTGCTGGTTGCCCTGCTGTCTGTCTGAAGCGTGAAGACT TGTGGGCGATATTTCAAGTAGCCGCCCGCCTCACAGAAAGAACCTCAACC TTGCTGCAATTCAATGACTGACGCATTCCTCCACCCGGTCCTTCTTGAAC ACGTCGCCCCCTTCACAGCTGATGCATCTGCAGCTGCGGTCATTTCCGGC AGACGCGAAAAAGCAAGACGAACTCACTCTCTCGTACCATTAATTTTGTC AAGAAGAGGGGTCCAGCGACAGACATGAAGGAATTCCAAACGTCTCACGT GTTGCGTATCCCTTCAATGTGAACGCATGCCGAACTCTGCCCAATCAAAC AGGCTGGGGGAGTACGCTGAGAAGGGCGTGGGTGTTTACGCCGACGACGT TTTCACGACCCCAGCGTCTCTCGCGGGGCTCCCCGGGTTGAGCGTGCCTT GCGGGCAGGACCGAGCTGGCCTGCCGATAGGCGTTCAGTTAATGGGTGAG CGGACTCGTAGCGGTTTGTGGTTATTTTTGTGGTAGAAATGTTCGGATGC AAGAGATGTTGAGCTTCCGGTTGCTTGAGAATAGGAGCGCGTTCGGTCAG CAACAAGAGAAGTGCGGCCGAAATCGTCGGATTATATGTCCCGCTGCAAC CCAAGGCGCCTGGATGTCATTGCAACCGTTCGCCTCTCGGCCTCTTGAAA TCAAGCAACATATCATGGATGCAAATGTCGCGCTCCAATCCCCCCGTCCC CCGCCCACGACGCTTTCAGGAAAATCATTGTCAGAAGATTTGCTCCTTAG GGTAGGGCAAGCGTACGAGTCCGCAACACCTTGGCATCGACAATTCGCGC CTGGGGTGTCTGCTTCTTCTCCGCCTGCGGCAGTGCCAACGGAGGCAGCG TAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13556:286..4488-

>mRNA_Ecto-sp13_S_contig13556.2820.1 ID=mRNA_Ecto-sp13_S_contig13556.2820.1|Name=mRNA_Ecto-sp13_S_contig13556.2820.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=726bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13556:286..4488- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAGTGATTCGGGAAGCGCTAGTGGAGCGAGTCCAGCCGGACGTTGC
CGCAGCTGTGAAAGAGGCTATCGACACGATGGCGTCCCTCGGGGCCGAGG
TGACCGAGGTTTCCCTCCCGTCCCTCCCGGAGCAATGCGCCGCGTACTAC
GTCACCGCCCTGTCGGAGGCGTCGGCAAACCTTGCCAGATTTGACGGGAT
ACGATACGGGCAACGCAACTCCGAGGCAACTTCTTCCAAGGAAGCGATGC
TCAAGAGCAGACACGACGGCTTCGGGGCAGAGGTTCGACAACGGATTATT
CTAGGAACTTTCTCCCTATCTTCCGGGTATTCGGACAAGTACTACAAGCG
GGCGCAGGCGATTCGCGAGGGGCTTTCCCGCGATTTTTCGACGGTTTTCG
AGAGGCTGGACGTCCTTGTTTGTCCCACCGCGCCCACCACCGCGTACCGG
CTGGGGGAGTACGCTGAGAAGGGCGTGGGTGTTTACGCCGACGACGTTTT
CACGACCCCAGCGTCTCTCGCGGGGCTCCCCGGGTTGAGCGTGCCTTGCG
GGCAGGACCGAGCTGGCCTGCCGATAGGCGTTCAGTTAATGGGAAAATCA
TTGTCAGAAGATTTGCTCCTTAGGGTAGGGCAAGCGTACGAGTCCGCAAC
ACCTTGGCATCGACAATTCGCGCCTGGGGTGTCTGCTTCTTCTCCGCCTG
CGGCAGTGCCAACGGAGGCAGCGTAG
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