mRNA_Ecto-sp13_S_contig13556.2820.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13556.2820.1 vs. uniprot
Match: A0A6H5KXC5_9PHAE (Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXC5_9PHAE) HSP 1 Score: 455 bits (1170), Expect = 1.870e-156 Identity = 237/246 (96.34%), Postives = 241/246 (97.97%), Query Frame = 1
Query: 1 LGGVQMGVIREALVERVQPDVAAAVKEAIDTMASLGAEVTEVSLPSLPEQCAAYYVTALSEASANLARFDGIRYGQRNSEATSSKEAMLKSRHDGFGAEVRQRIILGTFSLSSGYSDKYYKRAQAIREGLSRDFSTVFERLDVLVCPTAPTTAYRLGEYAEKGVGVYADDVFTTPASLAGLPGLSVPCGQDRAGLPIGVQLMGKSLSEDLLLRVGQAYESATPWHRQFAPGVSASSPPAAVPTEAA 738
L G++MGVIREALVERVQPDVAAAVKEAIDTMASLGA+VTEVSLPSLPEQCAAYYVTALSEASANLARFDGIRYGQRNSEATSSKEAMLKSRHDGFGAEVRQRIILGTFSLSSGYSDKYYKRAQAIREGLSRDFSTVFE+LDVLVCPTAPTTAYRLGEYAEKGVGVYADDVFTTPASLAGLPGLSVPCGQDRAGLPIGVQLMGK LSEDLLLRVGQAYESATPWHRQFAPGVSASSP AAVP AA
Sbjct: 317 LEGIKMGVIREALVERVQPDVAAAVKEAIDTMASLGADVTEVSLPSLPEQCAAYYVTALSEASANLARFDGIRYGQRNSEATSSKEAMLKSRHDGFGAEVRQRIILGTFSLSSGYSDKYYKRAQAIREGLSRDFSTVFEKLDVLVCPTAPTTAYRLGEYAEKGVGVYADDVFTTPASLAGLPGLSVPCGQDRAGLPIGVQLMGKPLSEDLLLRVGQAYESATPWHRQFAPGVSASSPAAAVPAGAA 562
BLAST of mRNA_Ecto-sp13_S_contig13556.2820.1 vs. uniprot
Match: D8LTD4_ECTSI (Glutamyl-tRNA amidotransferase, subunit A, c-terminal region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTD4_ECTSI) HSP 1 Score: 327 bits (838), Expect = 1.110e-110 Identity = 167/174 (95.98%), Postives = 169/174 (97.13%), Query Frame = 1
Query: 217 RYGQRNSEATSSKEAMLKSRHDGFGAEVRQRIILGTFSLSSGYSDKYYKRAQAIREGLSRDFSTVFERLDVLVCPTAPTTAYRLGEYAEKGVGVYADDVFTTPASLAGLPGLSVPCGQDRAGLPIGVQLMGKSLSEDLLLRVGQAYESATPWHRQFAPGVSASSPPAAVPTEAA 738
R QRNSEATSSKEAMLKSRHDGFGAEVRQRIILGTFSLSSGYSDKYYKRAQAIREGLSRDFSTVFE+LDVLVCPTAPTTAYRLGEYAEKGVGVYADDVFTTPASLAGLPGLSVPCGQDRAGLPIGVQLMG+SLSEDLLLRVGQAYESATPWHRQFAPGVSASSP AAVP AA
Sbjct: 70 RCRQRNSEATSSKEAMLKSRHDGFGAEVRQRIILGTFSLSSGYSDKYYKRAQAIREGLSRDFSTVFEKLDVLVCPTAPTTAYRLGEYAEKGVGVYADDVFTTPASLAGLPGLSVPCGQDRAGLPIGVQLMGQSLSEDLLLRVGQAYESATPWHRQFAPGVSASSPAAAVPAGAA 243
BLAST of mRNA_Ecto-sp13_S_contig13556.2820.1 vs. uniprot
Match: A0A836CQP8_9STRA (Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQP8_9STRA) HSP 1 Score: 292 bits (747), Expect = 3.370e-93 Identity = 146/233 (62.66%), Postives = 182/233 (78.11%), Query Frame = 1
Query: 1 LGGVQMGVIREALVER-VQPDVAAAVKEAIDTMASLGAEVTEVSLPSLPEQCAAYYVTALSEASANLARFDGIRYGQRNSEATSSKEAMLKSRHDGFGAEVRQRIILGTFSLSSGYSDKYYKRAQAIREGLSRDFSTVFERLDVLVCPTAPTTAYRLGEYAEKGVGVYADDVFTTPASLAGLPGLSVPCGQDRAGLPIGVQLMGKSLSEDLLLRVGQAYESATPWHRQFAPGV 696
L G+++G+I EAL V P+VAAA + A D +A+LGA + +VSLP LP+QCAAYYV ALSEASANLARFDG+RYG R +A S++ ++L++RHDGFGAEVRQRI+LGTFSLS+GY+D YY RAQA+R GL DF+ F DVL+CPTAPTTAYRLG++ KGV YADD+FT PASLAGLP LS+PCG D AGLPIGVQL+G + E+ L+R AYE +T W + PG+
Sbjct: 280 LEGLRVGLISEALTAGGVAPEVAAAARAAADALAALGARIADVSLPRLPQQCAAYYVNALSEASANLARFDGVRYGARARDAASARASLLRTRHDGFGAEVRQRILLGTFSLSAGYADAYYARAQAVRAGLRTDFARAFAGADVLLCPTAPTTAYRLGDFEAKGVASYADDLFTVPASLAGLPALSLPCGVDAAGLPIGVQLIGGAWQEEALVRAAYAYERSTDWRARLPPGL 512
BLAST of mRNA_Ecto-sp13_S_contig13556.2820.1 vs. uniprot
Match: A0A0G4GTE2_VITBC (Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GTE2_VITBC) HSP 1 Score: 241 bits (615), Expect = 8.990e-73 Identity = 123/228 (53.95%), Postives = 166/228 (72.81%), Query Frame = 1
Query: 1 LGGVQMGVIREALVE---RVQPDVAAAVKEAIDTMASLGAEVTEVSLPSLPEQCAAYYVTALSEASANLARFDGIRYGQR-NSEATSSKEAMLKSRHDGFGAEVRQRIILGTFSLSSGYSDKYYKRAQAIREGLSRDFSTVFERLDVLVCPTAPTTAYRLGEYAEKGVGVYADDVFTTPASLAGLPGLSVPCGQDRAGLPIGVQLMGKSLSEDLLLRVGQAYESATPW 672
L +++G+++E L + R+QP V AA K+++ +LGAE+ EV +P+L E CAAYY+T +SEAS+NLA++DGIRYG R +SE +K M+ SR GFG EV+QRI+LGTF+LS+GYSD YYK+AQ +R L+ +F VFE +D L+ PTAPTTAYRLG++ E V Y DD+ T PASL+GLP LSVPCG LPIG+Q++GK L E LL++G Y+ AT W
Sbjct: 314 LSKMRIGLLKETLDDGEGRMQPAVMAAFKDSLSVFKALGAELIEVDIPNLKEYCAAYYITVMSEASSNLAKYDGIRYGLRTSSEDPRAKRVMVDSRETGFGQEVKQRILLGTFALSAGYSDAYYKKAQKMRAALASNFERVFELVDALILPTAPTTAYRLGQFKENKVETYIDDLLTVPASLSGLPALSVPCGISAEDLPIGLQIVGKPLDELRLLQIGAGYDEATGW 541
BLAST of mRNA_Ecto-sp13_S_contig13556.2820.1 vs. uniprot
Match: A0A497A706_9CHLR (Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A497A706_9CHLR) HSP 1 Score: 238 bits (608), Expect = 1.050e-72 Identity = 118/223 (52.91%), Postives = 160/223 (71.75%), Query Frame = 1
Query: 7 GVQMGVIREALVERVQPDVAAAVKEAIDTMASLGAEVTEVSLPSLPEQCAAYYVTALSEASANLARFDGIRYGQRNSEATSSKEAMLKSRHDGFGAEVRQRIILGTFSLSSGYSDKYYKRAQAIREGLSRDFSTVFERLDVLVCPTAPTTAYRLGEYAEKGVGVYADDVFTTPASLAGLPGLSVPCGQDRAGLPIGVQLMGKSLSEDLLLRVGQAYESATPWH 675
G+++GV RE +E +QP+V AV+ AID +A +GAE+ ++SLP YY+ A +EASANLAR+DG++YG +AT +A K+R GFGAEV++RI+LGT++LS+GY D YY +AQ +R + +DF FE DV+VCPTAPTTA+++GE A + +Y DVFT ASLAGLPGLS+PCG D GLPIG+Q+MG++ E +LRV AYE AT WH
Sbjct: 257 GMRLGVPREYFIEGMQPEVETAVRAAIDLLAEMGAEIVDISLPHTEHALPVYYIIAPAEASANLARYDGVKYGFSFPDATDVWDAYRKTRQYGFGAEVKRRIMLGTYALSAGYYDAYYLKAQQVRTLIKQDFDRAFELCDVIVCPTAPTTAFKIGEKANDPLQMYLSDVFTLSASLAGLPGLSLPCGFDGEGLPIGLQIMGQTFDEPTVLRVAYAYEQATDWH 479
BLAST of mRNA_Ecto-sp13_S_contig13556.2820.1 vs. uniprot
Match: I0I1L9_CALAS (Glutamyl-tRNA(Gln) amidotransferase subunit A n=2 Tax=Caldilinea aerophila TaxID=133453 RepID=I0I1L9_CALAS) HSP 1 Score: 233 bits (594), Expect = 1.460e-70 Identity = 119/228 (52.19%), Postives = 162/228 (71.05%), Query Frame = 1
Query: 7 GVQMGVIREALVERVQPDVAAAVKEAIDTMASLGAEVTEVSLPSLPEQCAAYYVTALSEASANLARFDGIRYGQRNSEATSSKEAMLKSRHDGFGAEVRQRIILGTFSLSSGYSDKYYKRAQAIREGLSRDFSTVFERLDVLVCPTAPTTAYRLGEYAEKGVGVYADDVFTTPASLAGLPGLSVPCGQDRAGLPIGVQLMGKSLSEDLLLRVGQAYESATPWHRQFAP 690
G+++G+ E + VQP+V AAV+ AI+ + LGA+V +SLP+ + YY+ A +EASANLARFDG+RYG ++ A S E +SR GFGAEV++RI+LGT++LS+GY D YY +AQ +R + +DF FE++DV+ P APTTA+RLGE + + +Y DVFT +LAG+ G+SVPCG DR GLPIG+QLMG L E+++LRV AYE AT WHRQ AP
Sbjct: 259 GLRIGLPEEYFIAGVQPEVEAAVRRAIEVLVDLGADVRPISLPNTDKALPVYYLVATAEASANLARFDGVRYGY-SAGADSILENYRQSRGRGFGAEVKRRIMLGTYALSAGYYDAYYLKAQQVRTLIKQDFERAFEQVDVIASPVAPTTAFRLGEKTDDPLAMYLSDVFTITLNLAGMCGISVPCGFDRQGLPIGLQLMGPHLGEEIVLRVAHAYEQATQWHRQHAP 485
BLAST of mRNA_Ecto-sp13_S_contig13556.2820.1 vs. uniprot
Match: A0A0N7Z4L9_9CYAN (Glutamyl-tRNA(Gln) amidotransferase subunit A n=8 Tax=Cyanobacteria TaxID=1117 RepID=A0A0N7Z4L9_9CYAN) HSP 1 Score: 233 bits (593), Expect = 1.820e-70 Identity = 115/225 (51.11%), Postives = 160/225 (71.11%), Query Frame = 1
Query: 1 LGGVQMGVIREALVERVQPDVAAAVKEAIDTMASLGAEVTEVSLPSLPEQCAAYYVTALSEASANLARFDGIRYGQRNSEATSSKEAMLKSRHDGFGAEVRQRIILGTFSLSSGYSDKYYKRAQAIREGLSRDFSTVFERLDVLVCPTAPTTAYRLGEYAEKGVGVYADDVFTTPASLAGLPGLSVPCGQDRAGLPIGVQLMGKSLSEDLLLRVGQAYESATPWH 675
L G ++G+I+E E + P+V AV+ AID + +LGAEV E+S P AAYY+ A SEASANLAR+DG++YG R EA + E K+R GFGAEV++RI++GT++LS+GY D YY +AQ +R + +DF FE++DVLV PTAPTTA++LG+ ++ + +Y D+ T P +LAGLPG+SVPCG D GLPIG+Q++G L ED + +V AYE +T WH
Sbjct: 252 LKGKRVGIIKETFGEGLDPEVEKAVRSAIDQLKALGAEVKEISCPRFRYGIAAYYIIAPSEASANLARYDGVKYGARIEEAENLMEMYTKTRSQGFGAEVKRRIMIGTYALSAGYYDAYYLKAQKVRTLIKQDFEAAFEQVDVLVSPTAPTTAFKLGDKSQDPLSMYLIDLMTIPVNLAGLPGMSVPCGFDSQGLPIGLQIIGNVLREDQIFQVASAYERSTDWH 476
BLAST of mRNA_Ecto-sp13_S_contig13556.2820.1 vs. uniprot
Match: A0A3M9ZB13_9CYAN (Glutamyl-tRNA(Gln) amidotransferase subunit A n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A3M9ZB13_9CYAN) HSP 1 Score: 233 bits (593), Expect = 1.860e-70 Identity = 115/226 (50.88%), Postives = 159/226 (70.35%), Query Frame = 1
Query: 13 QMGVIREALVERVQPDVAAAVKEAIDTMASLGAEVTEVSLPSLPEQCAAYYVTALSEASANLARFDGIRYGQRNSEATSSKEAMLKSRHDGFGAEVRQRIILGTFSLSSGYSDKYYKRAQAIREGLSRDFSTVFERLDVLVCPTAPTTAYRLGEYAEKGVGVYADDVFTTPASLAGLPGLSVPCGQDRAGLPIGVQLMGKSLSEDLLLRVGQAYESATPWHRQFAP 690
++GVI+E E V P + AV++AI+ +LGAEV E+S P AAYY+ A SEASANLAR+DG++YG R +A + E K+R GFG EV++RI++GT++LS+GY D YY +AQ +R + +DF F ++DVLVCPT+PTTA++ GE + +G+Y D+ T P +LAGLPGLS+PCG D GLPIG+Q++G L EDL+L+ AYE AT WH+Q P
Sbjct: 260 RIGVIKETFGEGVDPAIEKAVRQAIEQFKALGAEVQEISCPQFRYGVAAYYIIAPSEASANLARYDGVKYGFRVEDAENLMEMYTKTRAQGFGPEVKRRIMIGTYTLSAGYYDAYYLKAQKVRTLIKQDFENAFAKVDVLVCPTSPTTAFKTGEKKDDPLGMYLLDLMTIPVNLAGLPGLSLPCGFDNKGLPIGLQIIGNVLREDLVLQAAYAYEQATDWHKQTPP 485
BLAST of mRNA_Ecto-sp13_S_contig13556.2820.1 vs. uniprot
Match: A0A7C6ZSK4_9CHLR (Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C6ZSK4_9CHLR) HSP 1 Score: 233 bits (593), Expect = 2.100e-70 Identity = 117/231 (50.65%), Postives = 163/231 (70.56%), Query Frame = 1
Query: 7 GVQMGVIREALVERVQPDVAAAVKEAIDTMASLGAEVTEVSLPSLPEQCAAYYVTALSEASANLARFDGIRYGQRNSEATSSKEAMLKSRHDGFGAEVRQRIILGTFSLSSGYSDKYYKRAQAIREGLSRDFSTVFERLDVLVCPTAPTTAYRLGEYAEKGVGVYADDVFTTPASLAGLPGLSVPCGQDRAGLPIGVQLMGKSLSEDLLLRVGQAYESATPWHRQFAPGVS 699
G+++G+ +E + VQP+V AAV+ AIDT+A +GAEV +SLP+ + YY+ A +EASANLARFDG+RYG ++ A S E +R GFGAEV++RI+LG ++LS+GY D YY +AQ +R + +DF FE +DV+ CP APTTA+R+GE A+ + +Y DVFT +LAG+ G+SVPCG DR GLPIG+Q+MG L E+++LR AYE AT WH +A V+
Sbjct: 259 GLRIGLPQEYFISGVQPEVEAAVRTAIDTLADMGAEVVPISLPNTDKALPVYYLVATAEASANLARFDGVRYGY-SAGADSILENYRATRGQGFGAEVKRRIMLGAYALSAGYYDAYYLKAQQVRTLIKQDFERAFEHVDVIACPVAPTTAFRIGEKADDPLAMYLSDVFTITLNLAGMCGISVPCGFDRVGLPIGLQIMGPHLGEEVVLRAAHAYEQATTWHTHWAQPVA 488
BLAST of mRNA_Ecto-sp13_S_contig13556.2820.1 vs. uniprot
Match: A0A7V4LR52_9BACT (Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A7V4LR52_9BACT) HSP 1 Score: 229 bits (585), Expect = 2.800e-70 Identity = 118/224 (52.68%), Postives = 152/224 (67.86%), Query Frame = 1
Query: 7 GVQMGVIREALVERVQPDVAAAVKEAIDTMASLGAEVTEVSLPSLPEQCAAYYVTALSEASANLARFDGIRYGQRNSEATSSKEAMLKSRHDGFGAEVRQRIILGTFSLSSGYSDKYYKRAQAIREGLSRDFSTVFERLDVLVCPTAPTTAYRLGEYAEKGVGVYADDVFTTPASLAGLPGLSVPCGQDRAGLPIGVQLMGKSLSEDLLLRVGQAYESATPWHR 678
G++ GV +E LVE + P+V V A+DT++ LG E+TEVSLP P A YY+ A +EASANLARFDG+RYG R A ++R GFG EV++RIILGT+ LSSGY D YY RAQ +R + RDF FE DVL+ P APT AYRLGE + + +Y D++T P +LAG+ LSVPCG GLP+G+Q++G +L E +LL+VG AYE AT WHR
Sbjct: 166 GLRAGVPQEFLVEGLDPEVRRQVLAAVDTVSRLGVEITEVSLPHAPLAIATYYILAPAEASANLARFDGVRYGLRAPGAADVMTMYCRTRAQGFGKEVKRRIILGTYVLSSGYHDAYYLRAQKVRTLIRRDFERAFESCDVLLAPVAPTAAYRLGELQDDPLKMYLGDIYTVPVNLAGICALSVPCGFTAGGLPVGLQIIGPALGEAVLLQVGHAYEQATEWHR 389 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13556.2820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13556.2820.1 >prot_Ecto-sp13_S_contig13556.2820.1 ID=prot_Ecto-sp13_S_contig13556.2820.1|Name=mRNA_Ecto-sp13_S_contig13556.2820.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=242bp MGVIREALVERVQPDVAAAVKEAIDTMASLGAEVTEVSLPSLPEQCAAYYback to top mRNA from alignment at Ecto-sp13_S_contig13556:286..4488- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13556.2820.1 ID=mRNA_Ecto-sp13_S_contig13556.2820.1|Name=mRNA_Ecto-sp13_S_contig13556.2820.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4203bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13556:286..4488- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13556:286..4488- >mRNA_Ecto-sp13_S_contig13556.2820.1 ID=mRNA_Ecto-sp13_S_contig13556.2820.1|Name=mRNA_Ecto-sp13_S_contig13556.2820.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=726bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13556:286..4488- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |