mRNA_Ecto-sp13_S_contig13542.2812.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13542.2812.1
Unique NamemRNA_Ecto-sp13_S_contig13542.2812.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13542.2812.1 vs. uniprot
Match: D7FL28_ECTSI (Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL28_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 4.270e-53
Identity = 98/102 (96.08%), Postives = 99/102 (97.06%), Query Frame = 1
Query:    1 EELHALAEELQRVKRDRGGQESREVSREQWGRLRSVTGALSQRLCEQLRLVLEPMVATKLQGDYRSGKRINMRRVIPYIASGFRKDKIWLRRTKPAKRDYQV 306
            EELHALAEELQRVKRDR GQE REVSRE WGRLRSVTGALSQRLCEQLRLVLEPMVATKLQGDYRSGKRINMRRVIPYIASGFRKDKIWLRRTKPAKRDYQ+
Sbjct: 5218 EELHALAEELQRVKRDRDGQEGREVSRELWGRLRSVTGALSQRLCEQLRLVLEPMVATKLQGDYRSGKRINMRRVIPYIASGFRKDKIWLRRTKPAKRDYQI 5319          
BLAST of mRNA_Ecto-sp13_S_contig13542.2812.1 vs. uniprot
Match: A0A6H5JCJ9_9PHAE (Midasin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCJ9_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 9.980e-50
Identity = 93/102 (91.18%), Postives = 97/102 (95.10%), Query Frame = 1
Query:    1 EELHALAEELQRVKRDRGGQESREVSREQWGRLRSVTGALSQRLCEQLRLVLEPMVATKLQGDYRSGKRINMRRVIPYIASGFRKDKIWLRRTKPAKRDYQV 306
            EELHALAEELQRVKR R G+E  EVS++ WGRLRSVTGALSQRLCEQLRLVLEPMVATKLQGDYRSGKRINMRRVIPYIASGFRKDKIWLRRTKPAKRDYQ+
Sbjct: 4450 EELHALAEELQRVKRHRDGEEGGEVSQKLWGRLRSVTGALSQRLCEQLRLVLEPMVATKLQGDYRSGKRINMRRVIPYIASGFRKDKIWLRRTKPAKRDYQI 4551          
BLAST of mRNA_Ecto-sp13_S_contig13542.2812.1 vs. uniprot
Match: A0A836CJU6_9STRA (Midasin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJU6_9STRA)

HSP 1 Score: 122 bits (306), Expect = 8.360e-32
Identity = 64/87 (73.56%), Postives = 71/87 (81.61%), Query Frame = 1
Query:   52 GGQESREVSREQWGRLRSVTGALSQRLCEQLRLVLEPMVATKLQGDYRSGKRINMRRVIPYIASGFRKDKIWLRRTKPAKRDYQVSV 312
            GG  S   +  +W RLR++T   SQRLCEQLRLVL P VATKL+GDYR+GKRINMRRVI YIASGFR+DKIWLRRTKPAKR YQV V
Sbjct:   13 GGALSAGEAHRRWARLRALTAPASQRLCEQLRLVLAPQVATKLRGDYRAGKRINMRRVIGYIASGFRRDKIWLRRTKPAKRAYQVLV 99          
BLAST of mRNA_Ecto-sp13_S_contig13542.2812.1 vs. uniprot
Match: UPI0009E58E41 (midasin-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E58E41)

HSP 1 Score: 119 bits (299), Expect = 8.420e-31
Identity = 59/89 (66.29%), Postives = 73/89 (82.02%), Query Frame = 1
Query:   46 DRGGQESREVSREQWGRLRSVTGALSQRLCEQLRLVLEPMVATKLQGDYRSGKRINMRRVIPYIASGFRKDKIWLRRTKPAKRDYQVSV 312
            DRG  + + V++E W +   +T +LSQ LCEQLRLVLEP +ATKL+GDYRSGKR+NMR+VI YIAS FRKDKIWLRRTKP+KR YQ+ +
Sbjct:  149 DRGTADEQRVAQEAWRKYELLTSSLSQELCEQLRLVLEPSLATKLKGDYRSGKRLNMRKVISYIASQFRKDKIWLRRTKPSKRQYQIML 237          
BLAST of mRNA_Ecto-sp13_S_contig13542.2812.1 vs. uniprot
Match: A0A2R5GN05_9STRA (Midasin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GN05_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.920e-30
Identity = 62/83 (74.70%), Postives = 71/83 (85.54%), Query Frame = 1
Query:   58 QESREVSREQWGRLRSVTGALSQRLCEQLRLVLEPMVATKLQGDYRSGKRINMRRVIPYIASGFRKDKIWLRRTKPAKRDYQV 306
            +E  E  RE+WGRL   T   SQRLCEQLRL+LEP +A+KL+GDYR+GKRINMRRVIPYIAS FRKDKIWLRRTKP+KR+YQV
Sbjct: 5409 EELSEADRERWGRLAGDTNESSQRLCEQLRLLLEPTLASKLRGDYRTGKRINMRRVIPYIASQFRKDKIWLRRTKPSKREYQV 5491          
BLAST of mRNA_Ecto-sp13_S_contig13542.2812.1 vs. uniprot
Match: A0A0S7J352_9TELE (MDN1 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7J352_9TELE)

HSP 1 Score: 113 bits (282), Expect = 2.050e-30
Identity = 53/75 (70.67%), Postives = 67/75 (89.33%), Query Frame = 1
Query:   88 WGRLRSVTGALSQRLCEQLRLVLEPMVATKLQGDYRSGKRINMRRVIPYIASGFRKDKIWLRRTKPAKRDYQVSV 312
            W + +++T ALSQ+LCEQLRL+LEP  A KL+GDYR+GKR+NMR+VIPYIAS FRKDKIWLRRTKP+KR+YQ+ +
Sbjct:   29 WLQYQALTSALSQQLCEQLRLILEPTQAAKLRGDYRTGKRLNMRKVIPYIASQFRKDKIWLRRTKPSKREYQICL 103          
BLAST of mRNA_Ecto-sp13_S_contig13542.2812.1 vs. uniprot
Match: R7T6A3_CAPTE (Uncharacterized protein (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7T6A3_CAPTE)

HSP 1 Score: 112 bits (279), Expect = 4.380e-30
Identity = 54/77 (70.13%), Postives = 67/77 (87.01%), Query Frame = 1
Query:   82 EQWGRLRSVTGALSQRLCEQLRLVLEPMVATKLQGDYRSGKRINMRRVIPYIASGFRKDKIWLRRTKPAKRDYQVSV 312
            E W +  ++T +LSQ LCEQLRLVLEP  A+K++GDYR+GKR+NMR+VIPYIAS FRKDKIWLRRT+P+KR+YQV V
Sbjct:    7 EAWQQYEALTASLSQDLCEQLRLVLEPTQASKMRGDYRTGKRLNMRKVIPYIASQFRKDKIWLRRTQPSKREYQVMV 83          
BLAST of mRNA_Ecto-sp13_S_contig13542.2812.1 vs. uniprot
Match: UPI00077A9358 (midasin-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A9358)

HSP 1 Score: 122 bits (305), Expect = 4.820e-30
Identity = 60/89 (67.42%), Postives = 74/89 (83.15%), Query Frame = 1
Query:   46 DRGGQESREVSREQWGRLRSVTGALSQRLCEQLRLVLEPMVATKLQGDYRSGKRINMRRVIPYIASGFRKDKIWLRRTKPAKRDYQVSV 312
            DRG  E ++V++E W +   +T  LSQ LCEQLRLVLEP +A+KL+GDYRSGKR+NMR+VIPYIAS FRKDKIWLRRTKP+KR YQ+ +
Sbjct: 2418 DRGTIEEQQVAQEAWRKYEFLTAGLSQELCEQLRLVLEPALASKLKGDYRSGKRLNMRKVIPYIASQFRKDKIWLRRTKPSKRQYQIML 2506          
BLAST of mRNA_Ecto-sp13_S_contig13542.2812.1 vs. uniprot
Match: UPI001CF1AE70 (midasin-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF1AE70)

HSP 1 Score: 122 bits (305), Expect = 4.860e-30
Identity = 60/89 (67.42%), Postives = 74/89 (83.15%), Query Frame = 1
Query:   46 DRGGQESREVSREQWGRLRSVTGALSQRLCEQLRLVLEPMVATKLQGDYRSGKRINMRRVIPYIASGFRKDKIWLRRTKPAKRDYQVSV 312
            DRG  E ++V++E W +   +T  LSQ LCEQLRLVLEP +A+KL+GDYRSGKR+NMR+VIPYIAS FRKDKIWLRRTKP+KR YQ+ +
Sbjct: 3654 DRGTIEEQQVAQEAWRKYEFLTAGLSQELCEQLRLVLEPALASKLKGDYRSGKRLNMRKVIPYIASQFRKDKIWLRRTKPSKRQYQIML 3742          
BLAST of mRNA_Ecto-sp13_S_contig13542.2812.1 vs. uniprot
Match: UPI001CF59FC0 (midasin-like n=3 Tax=Acropora TaxID=6127 RepID=UPI001CF59FC0)

HSP 1 Score: 122 bits (305), Expect = 4.870e-30
Identity = 60/89 (67.42%), Postives = 74/89 (83.15%), Query Frame = 1
Query:   46 DRGGQESREVSREQWGRLRSVTGALSQRLCEQLRLVLEPMVATKLQGDYRSGKRINMRRVIPYIASGFRKDKIWLRRTKPAKRDYQVSV 312
            DRG  E ++V++E W +   +T  LSQ LCEQLRLVLEP +A+KL+GDYRSGKR+NMR+VIPYIAS FRKDKIWLRRTKP+KR YQ+ +
Sbjct: 5207 DRGTIEEQQVAQEAWRKYEFLTAGLSQELCEQLRLVLEPALASKLKGDYRSGKRLNMRKVIPYIASQFRKDKIWLRRTKPSKRQYQIML 5295          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13542.2812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL28_ECTSI4.270e-5396.08Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JCJ9_9PHAE9.980e-5091.18Midasin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
A0A836CJU6_9STRA8.360e-3273.56Midasin n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
UPI0009E58E418.420e-3166.29midasin-like n=1 Tax=Orbicella faveolata TaxID=484... [more]
A0A2R5GN05_9STRA1.920e-3074.70Midasin n=1 Tax=Hondaea fermentalgiana TaxID=23152... [more]
A0A0S7J352_9TELE2.050e-3070.67MDN1 (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]
R7T6A3_CAPTE4.380e-3070.13Uncharacterized protein (Fragment) n=1 Tax=Capitel... [more]
UPI00077A93584.820e-3067.42midasin-like n=1 Tax=Acropora digitifera TaxID=707... [more]
UPI001CF1AE704.860e-3067.42midasin-like n=1 Tax=Acropora millepora TaxID=4526... [more]
UPI001CF59FC04.870e-3067.42midasin-like n=3 Tax=Acropora TaxID=6127 RepID=UPI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13542contigEcto-sp13_S_contig13542:4324..4635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score191.4
Seed ortholog evalue2.1e-46
Seed eggNOG ortholog2880.D7FL28
Model size312
KEGG koko:K14572
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.ATPase activity
EggNOG OGsCOG5271@1,KOG1808@2759
Cds size312
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462723.2858038-CDS-Ecto-sp13_S_contig13542:4323..46351681462723.2858038-CDS-Ecto-sp13_S_contig13542:4323..4635Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13542 4324..4635 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13542.2812.1prot_Ecto-sp13_S_contig13542.2812.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13542 4324..4635 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13542.2812.1

>prot_Ecto-sp13_S_contig13542.2812.1 ID=prot_Ecto-sp13_S_contig13542.2812.1|Name=mRNA_Ecto-sp13_S_contig13542.2812.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
EELHALAEELQRVKRDRGGQESREVSREQWGRLRSVTGALSQRLCEQLRL
VLEPMVATKLQGDYRSGKRINMRRVIPYIASGFRKDKIWLRRTKPAKRDY
QVSV
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mRNA from alignment at Ecto-sp13_S_contig13542:4324..4635-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13542.2812.1 ID=mRNA_Ecto-sp13_S_contig13542.2812.1|Name=mRNA_Ecto-sp13_S_contig13542.2812.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13542:4324..4635- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGAGCTCCACGCGCTGGCGGAGGAGTTGCAACGAGTGAAGCGTGACCG TGGCGGGCAGGAAAGCCGTGAGGTTTCGCGGGAGCAGTGGGGCAGGCTCA GAAGCGTCACCGGCGCGCTGTCCCAGCGGCTGTGCGAGCAGCTTCGTCTT GTTTTGGAGCCCATGGTGGCGACGAAGTTGCAGGGGGACTACCGCTCTGG TAAGAGGATCAACATGCGGAGAGTCATCCCGTACATCGCGTCGGGCTTCA GGAAGGATAAGATCTGGCTCAGGAGGACCAAGCCCGCCAAGAGGGACTAC CAGGTGAGTGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13542:4324..4635-

>mRNA_Ecto-sp13_S_contig13542.2812.1 ID=mRNA_Ecto-sp13_S_contig13542.2812.1|Name=mRNA_Ecto-sp13_S_contig13542.2812.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13542:4324..4635- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGAGCTCCACGCGCTGGCGGAGGAGTTGCAACGAGTGAAGCGTGACCG
TGGCGGGCAGGAAAGCCGTGAGGTTTCGCGGGAGCAGTGGGGCAGGCTCA
GAAGCGTCACCGGCGCGCTGTCCCAGCGGCTGTGCGAGCAGCTTCGTCTT
GTTTTGGAGCCCATGGTGGCGACGAAGTTGCAGGGGGACTACCGCTCTGG
TAAGAGGATCAACATGCGGAGAGTCATCCCGTACATCGCGTCGGGCTTCA
GGAAGGATAAGATCTGGCTCAGGAGGACCAAGCCCGCCAAGAGGGACTAC
CAGGTGAGTGTG
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