prot_Ecto-sp13_S_contig13482.2774.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13482.2774.1
Unique Nameprot_Ecto-sp13_S_contig13482.2774.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length43
Homology
BLAST of mRNA_Ecto-sp13_S_contig13482.2774.1 vs. uniprot
Match: D7G311_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G311_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 7.970e-20
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 0
Query:    1 AFVSVRNSTFIGNIAENHGGAISSWGQGELEVSNCSFVGNEAV 43
            AFVSVRNSTFIGN+AENHGGAISSWGQGELEVSNCSFVGNEAV
Sbjct:  205 AFVSVRNSTFIGNVAENHGGAISSWGQGELEVSNCSFVGNEAV 247          
BLAST of mRNA_Ecto-sp13_S_contig13482.2774.1 vs. uniprot
Match: A0A6H5KAJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ9_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 7.980e-20
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 0
Query:    1 AFVSVRNSTFIGNIAENHGGAISSWGQGELEVSNCSFVGNEAV 43
            AFVSVRNSTFIGN+AENHGGAISSWGQGELEVSNCSFVGNEAV
Sbjct:  184 AFVSVRNSTFIGNVAENHGGAISSWGQGELEVSNCSFVGNEAV 226          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13482.2774.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G311_ECTSI7.970e-2097.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAJ9_9PHAE7.980e-2097.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003368Polymorphic outer membrane protein repeatTIGRFAMTIGR01376TIGR01376coord: 9..24
e-value: 1.1E-4
score: 19.8
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 3..41

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13482contigEcto-sp13_S_contig13482:506..634 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13482.2774.1mRNA_Ecto-sp13_S_contig13482.2774.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13482 506..634 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13482.2774.1 ID=prot_Ecto-sp13_S_contig13482.2774.1|Name=mRNA_Ecto-sp13_S_contig13482.2774.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=43bp
AFVSVRNSTFIGNIAENHGGAISSWGQGELEVSNCSFVGNEAV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003368POMP_repeat
IPR011050Pectin_lyase_fold/virulence