mRNA_Ecto-sp13_S_contig13482.2774.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13482.2774.1
Unique NamemRNA_Ecto-sp13_S_contig13482.2774.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13482.2774.1 vs. uniprot
Match: D7G311_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G311_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 7.970e-20
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 AFVSVRNSTFIGNIAENHGGAISSWGQGELEVSNCSFVGNEAV 129
            AFVSVRNSTFIGN+AENHGGAISSWGQGELEVSNCSFVGNEAV
Sbjct:  205 AFVSVRNSTFIGNVAENHGGAISSWGQGELEVSNCSFVGNEAV 247
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BLAST of mRNA_Ecto-sp13_S_contig13482.2774.1 vs. uniprot
Match: A0A6H5KAJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ9_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 7.980e-20
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 AFVSVRNSTFIGNIAENHGGAISSWGQGELEVSNCSFVGNEAV 129
            AFVSVRNSTFIGN+AENHGGAISSWGQGELEVSNCSFVGNEAV
Sbjct:  184 AFVSVRNSTFIGNVAENHGGAISSWGQGELEVSNCSFVGNEAV 226
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13482.2774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G311_ECTSI7.970e-2097.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAJ9_9PHAE7.980e-2097.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13482contigEcto-sp13_S_contig13482:506..634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size129
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size129
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462719.8298018-CDS-Ecto-sp13_S_contig13482:505..6341681462719.8298018-CDS-Ecto-sp13_S_contig13482:505..634Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13482 506..634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13482.2774.1prot_Ecto-sp13_S_contig13482.2774.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13482 506..634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13482.2774.1

>prot_Ecto-sp13_S_contig13482.2774.1 ID=prot_Ecto-sp13_S_contig13482.2774.1|Name=mRNA_Ecto-sp13_S_contig13482.2774.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=43bp
AFVSVRNSTFIGNIAENHGGAISSWGQGELEVSNCSFVGNEAV
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mRNA from alignment at Ecto-sp13_S_contig13482:506..634+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13482.2774.1 ID=mRNA_Ecto-sp13_S_contig13482.2774.1|Name=mRNA_Ecto-sp13_S_contig13482.2774.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13482:506..634+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTTCGTGAGCGTGAGAAACTCCACCTTCATCGGCAATATCGCGGAAAA
CCACGGAGGCGCTATTTCCTCCTGGGGGCAGGGGGAGCTGGAAGTGAGCA
ACTGCAGCTTCGTGGGCAACGAGGCCGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13482:506..634+

>mRNA_Ecto-sp13_S_contig13482.2774.1 ID=mRNA_Ecto-sp13_S_contig13482.2774.1|Name=mRNA_Ecto-sp13_S_contig13482.2774.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13482:506..634+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTTCGTGAGCGTGAGAAACTCCACCTTCATCGGCAATATCGCGGAAAA
CCACGGAGGCGCTATTTCCTCCTGGGGGCAGGGGGAGCTGGAAGTGAGCA
ACTGCAGCTTCGTGGGCAACGAGGCCGTC
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