mRNA_Ecto-sp13_S_contig13454.2751.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13454.2751.1
Unique NamemRNA_Ecto-sp13_S_contig13454.2751.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13454.2751.1 vs. uniprot
Match: A0A6H5JDC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDC0_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 3.940e-14
Identity = 38/40 (95.00%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 RYNLDNCLFIFNVAGNDGGGALYLLSMEESSDLTGIVTFT 120
            RYNLDNCLFIFNVAGNDGGG LYLLSME SSDLTGIVTFT
Sbjct:  456 RYNLDNCLFIFNVAGNDGGGVLYLLSME-SSDLTGIVTFT 494
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BLAST of mRNA_Ecto-sp13_S_contig13454.2751.1 vs. uniprot
Match: D7G6U0_ECTSI (REJ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U0_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 9.670e-14
Identity = 38/40 (95.00%), Postives = 38/40 (95.00%), Query Frame = 2 
Query:    2 GTTWTIVCSSSTSPEMTGVELCTSSVWRSRVISPALSLSP 121
            GTTWTIVCSSSTSP MTGVE CTSSVWRSRVISPALSLSP
Sbjct:  181 GTTWTIVCSSSTSPAMTGVEFCTSSVWRSRVISPALSLSP 220
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13454.2751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JDC0_9PHAE3.940e-1495.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6U0_ECTSI9.670e-1495.00REJ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13454contigEcto-sp13_S_contig13454:192..1382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size334
Hectar predicted targeting categoryother localisation
Exons4
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462718.4864647-CDS-Ecto-sp13_S_contig13454:192..2131681462718.4864647-CDS-Ecto-sp13_S_contig13454:192..213Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13454 193..213 -
1681462718.500314-CDS-Ecto-sp13_S_contig13454:526..6121681462718.500314-CDS-Ecto-sp13_S_contig13454:526..612Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13454 527..612 -
1681462718.5171766-CDS-Ecto-sp13_S_contig13454:811..9151681462718.5171766-CDS-Ecto-sp13_S_contig13454:811..915Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13454 812..915 -
1681462718.5282483-CDS-Ecto-sp13_S_contig13454:1260..13821681462718.5282483-CDS-Ecto-sp13_S_contig13454:1260..1382Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13454 1261..1382 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13454.2751.1prot_Ecto-sp13_S_contig13454.2751.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13454 193..1382 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13454.2751.1

>prot_Ecto-sp13_S_contig13454.2751.1 ID=prot_Ecto-sp13_S_contig13454.2751.1|Name=mRNA_Ecto-sp13_S_contig13454.2751.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
RYNLDNCLFIFNVAGNDGGGALYLLSMEESSDLTGIVTFTSPIFEENSAS
GNGSITSIACGNVVVESESTSEYEEDEGAFAIQNGFESCSSVAFLSTLEP
GPELSGARFSD
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mRNA from alignment at Ecto-sp13_S_contig13454:192..1382-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13454.2751.1 ID=mRNA_Ecto-sp13_S_contig13454.2751.1|Name=mRNA_Ecto-sp13_S_contig13454.2751.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1191bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13454:192..1382- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTACAACCTGGACAATTGTCTGTTCATCTTCAACGTCGCCGGAAATGA
CGGGGGTGGAGCTCTGTACCTCCTCAGTATGGAGGAGTCGAGTGATCTCA
CCGGCATTGTCACTTTCACCAGGTCAGATGGGGGAACAGTACCTCCGTTC
ACCCCCGCTTGTAGTATTGTTGCGGAGGGTCTCTTGAGCCTAAACATGCA
GTACAGCATTTCCATGGCAATGTGCGCATAGTGCCATGACAGTGGGAATG
CCTTCAGGATCATGGTTTTCTCCTCTCGAAGAACAATAATACGTTCTATC
CGACATGATTGCCCAGGAATGTGAATACGAGATTTTTCAAGGACTAGTTG
CGCTAGGGCTGTTGAACTGTGGTACAAATATATAAACTTGTGTCAGCCGG
AGCTCATCCATCGCGGCTGTGTCTATCGTTTCCCCCTGGTCGGCGCTGTC
CTAACCCCATCGTACAGTCCAATATTTGAAGAAAACAGTGCGTCGGGCAA
CGGCTCGATCACATCCATCGCGTGCGGAAATGTCGTCGTTGAGAGCGAGT
CCACTTCGGAGTACGAAGAAGGTGTGCAAGTCCATGAAAGAACGCGTTTG
CTTTCGTACCATACCAATCCTCGCTGTTTGACGGTGATACTTAGACAACT
GAACTTTTTTGTCTTCCACAACACGTGACTACGGCGTCAGCTCTAGTCAA
CCCATTTGCCCTTCTACGTATCGCAACATTCATGAGCAATATATTGCACT
GCCTACTTAACGCATCACAGATGAAGGCGCTTTCGCCATCCAGAACGGGT
TCGAGTCCTGTTCGTCAGTTGCATTTCTCAGTACCCTGGAACCTGGCCCT
GAGCTGGTGAGTAATGGTGTTCAGGTAGCAGGGATCACCAAGAAATGAAT
GCCTTGCGACAACAATCGTCTATGCACCTCGGTAGTGGAATCTACAACAG
CATGAGGAGAGATTCGTCCTTGGCTCAGATCGAAGTACTAGTACTGTTTC
CCAGAAACCTACCTAGTGAAGTTCGAGACACTTGGGCCGTATTGAAGTAT
CGTGAAAACAACCCCCCGCCGCCTTCTATGTAGATGAAGCCGGCAGCAAA
TATCGCACACTCTCTTGACTTTTTTTTTGTGGCGACACATACACGTTACA
TCGATTGTCCTCCGTGAAGTCCGGCGCACGTTTCTCGGATA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13454:192..1382-

>mRNA_Ecto-sp13_S_contig13454.2751.1 ID=mRNA_Ecto-sp13_S_contig13454.2751.1|Name=mRNA_Ecto-sp13_S_contig13454.2751.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13454:192..1382- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTACAACCTGGACAATTGTCTGTTCATCTTCAACGTCGCCGGAAATGA
CGGGGGTGGAGCTCTGTACCTCCTCAGTATGGAGGAGTCGAGTGATCTCA
CCGGCATTGTCACTTTCACCAGTCCAATATTTGAAGAAAACAGTGCGTCG
GGCAACGGCTCGATCACATCCATCGCGTGCGGAAATGTCGTCGTTGAGAG
CGAGTCCACTTCGGAGTACGAAGAAGATGAAGGCGCTTTCGCCATCCAGA
ACGGGTTCGAGTCCTGTTCGTCAGTTGCATTTCTCAGTACCCTGGAACCT
GGCCCTGAGCTGTCCGGCGCACGTTTCTCGGAT
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