prot_Ecto-sp13_S_contig1342.2733.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1342.2733.1
Unique Nameprot_Ecto-sp13_S_contig1342.2733.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length399
Homology
BLAST of mRNA_Ecto-sp13_S_contig1342.2733.1 vs. uniprot
Match: D8LDC0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDC0_ECTSI)

HSP 1 Score: 699 bits (1804), Expect = 1.360e-252
Identity = 372/407 (91.40%), Postives = 379/407 (93.12%), Query Frame = 0
Query:    1 MIQEGAPGHSLPHRCNMCWN---------EGNGSCYVTRCGHLFCESCAFRHFGQSQACPTCGHGLDESEIQDLTLGLEPSSVRRIVFEEALKEPNHHSSSQAALRTAELANETLGFLFSQMLLESQRGAEATSLLKGEVAKLKHEQGRVTMQMRNQNAAADQKHREMEHKLRVRTKELVDLQEAYKEKNRKCQAWEKAYANLRSQTTDPSRGGGFTPPESPRAGAMRGPSGSFNGGQGGSMQHQGPPRGVASPGGXXXXXXXLGSAGMPRPGDRIRTNSPHSSNRGIAGYAAGGGRSSRPSWTMPRPNTSRGGSGNGAAGDRVSPMLRPRDGQGHSSHSVTPSPTFSAQQGMSGGRFGPKRPETPLEVRGYYSSRNASPGNRSSGAGGGAGARSSSFFPSSKAGLF 398
            MIQEGAPG +LPHRCNMCWN         EG GSCYVTRCGHLFCESCAFRHFGQSQACPTCGHGLDESEIQDLTLGLEPSS+RRIVFEEALKEPNHHSSSQAALRTAELANETLGFLFSQMLLE+QRGAEATS+LKGEVAKLKHEQGRVTMQMRNQNAAADQKHREMEHKLRVRTKELVDLQEAYKEKNRKCQAWEKAYANLRSQTTDPSRGGGFTPPESPRAGAMRGPSGSFNGGQGGSMQHQGP         XXXXXX LG AGMPRPGDRI TNSPHSSNRG+AGYAAGGGRSSRPSW +PRPNTSRGGSGNGA GDRVSPMLRPRDGQGHSSHSVTPSPTFSAQQGMSGGRF PKRPETP+EVRGYYS RNASPGNRSSGAGGG GARSSSFFPSSKAGLF
Sbjct:    1 MIQEGAPGQTLPHRCNMCWNPHPVALPRQEGTGSCYVTRCGHLFCESCAFRHFGQSQACPTCGHGLDESEIQDLTLGLEPSSLRRIVFEEALKEPNHHSSSQAALRTAELANETLGFLFSQMLLENQRGAEATSVLKGEVAKLKHEQGRVTMQMRNQNAAADQKHREMEHKLRVRTKELVDLQEAYKEKNRKCQAWEKAYANLRSQTTDPSRGGGFTPPESPRAGAMRGPSGSFNGGQGGSMQHQGPXXXXXXXXXXXXXXXGLGVAGMPRPGDRIGTNSPHSSNRGVAGYAAGGGRSSRPSWPIPRPNTSRGGSGNGATGDRVSPMLRPRDGQGHSSHSVTPSPTFSAQQGMSGGRFAPKRPETPMEVRGYYS-RNASPGNRSSGAGGGVGARSSSFFPSSKAGLF 406          
BLAST of mRNA_Ecto-sp13_S_contig1342.2733.1 vs. uniprot
Match: A0A6H5JFE1_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE1_9PHAE)

HSP 1 Score: 551 bits (1420), Expect = 5.920e-194
Identity = 317/471 (67.30%), Postives = 324/471 (68.79%), Query Frame = 0
Query:    1 MIQEGAPGHSLPHRCNMCWNEGNGSCYVTRCGHLFCESCAFRHFGQSQACPTCGHGLDESEIQDLTLGLEPSSVRRIVFE------------------------------------------------------------------------EALKEPNHHSSSQAALRTAELANETLGFLFSQMLLESQRGAEATSLLKGEVAKLKHEQGRVTMQMRNQNAAADQKHREMEHKLRVRTKELVDLQEAYKEKNRKCQAWEKAYANLRSQTTDPSRGGGFTPPESPRAGAMRGPSGSFNGGQGGSMQHQGPPRGVASPGGXXXXXXXLGSAGM-PRPGDRIRTNSPHSSNRGIAGYAAGGGRSSRPSWTMPRPNTSRGGSGNGAAGDRVSPMLRPRDGQGHSSHSVTPSPTFSAQQGMSGGRFGPKRPETPLEVRGYYSSRNASPGNRSSGAGGGAGARSSSFFPSSKAGLF 398
            MIQEG PGHSLPHRCNMCWNEGNGSCYVTRCGHLFCESCAFRHFGQSQACPTCGHGLDESEIQDLTLGLEPSSVRRIVFE                                                                        EALKEPN+HSSSQAALRTAELANETLGFLFSQMLLESQRGAEATSLLKGEVAKLKHEQGRVTMQMRNQNAAADQK REMEHKLRVRTKELVDLQEAYKEKNRKCQAWEKAYANLRSQ                                                 G       + ++G   RP   ++  +     RGIAGYAAGGGRSSRPSWTMPRPNTSRGG GNGAAGDRVSPMLRPRDGQGHSSHSVTPSPTFSAQQGMSGGRF PKRPETPLEVRGYYSSRNASPGNRSSGAGGG GARSSSFFPSSKAGLF
Sbjct:    1 MIQEGTPGHSLPHRCNMCWNEGNGSCYVTRCGHLFCESCAFRHFGQSQACPTCGHGLDESEIQDLTLGLEPSSVRRIVFERTTAVFSPDTAFFVCDPFPPSFSYPPNLTAYRSEYSNIFSEDLVINALSFQISTVSLPCFLPATHSNPPHHQEALKEPNYHSSSQAALRTAELANETLGFLFSQMLLESQRGAEATSLLKGEVAKLKHEQGRVTMQMRNQNAAADQKQREMEHKLRVRTKELVDLQEAYKEKNRKCQAWEKAYANLRSQ-------------------------------------------------GRRFHASRISASGRHARPFRLVQRRT----GRGIAGYAAGGGRSSRPSWTMPRPNTSRGGGGNGAAGDRVSPMLRPRDGQGHSSHSVTPSPTFSAQQGMSGGRFAPKRPETPLEVRGYYSSRNASPGNRSSGAGGGVGARSSSFFPSSKAGLF 418          
BLAST of mRNA_Ecto-sp13_S_contig1342.2733.1 vs. uniprot
Match: A0A833WTW3_PHYIN (Zinc-RING finger domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WTW3_PHYIN)

HSP 1 Score: 93.2 bits (230), Expect = 2.340e-17
Identity = 62/198 (31.31%), Postives = 101/198 (51.01%), Query Frame = 0
Query:   14 RCNMCWN------EGNGSCYVTRCGHLFCESCAFRHFGQSQA-CPTCGHGLDESE--IQDLTL-GLEPSSVRRIVFEEALKEPNHHSSSQAALRTAELANETLGFLFSQMLLESQRGAEATSLLKGEVAK----LKHEQGRVTMQMRNQNAAADQKHREMEHKLRVRTKELVDLQEAYKEKNRKCQAWEKAYANLRSQ 197
            RCN CW       +   +CY T CGHLFCE CA++HFGQ +  CP C   L+E+   I + T+ G+  S     ++EE + +P+            E   + L F+  Q+  +S R       ++ + A+     + + G   +Q++N     + + RE + K++  T    +L+EAYKEK+RKC+ WEK    L++Q
Sbjct:   47 RCNACWEPILPDVQSAETCYRTSCGHLFCEKCAYKHFGQGRLQCPVCSIDLNEARGGISETTIHGVADSKRTEAIWEEMMADPSS---------CFEHFQQALDFILFQLAQDSFRQVRVMEEIRRQQAEEQKAFQIQHGEKYIQLKNYTDQLEAELRETKSKMQALTTSNDELREAYKEKSRKCRNWEKMCKTLKAQ 235          
BLAST of mRNA_Ecto-sp13_S_contig1342.2733.1 vs. uniprot
Match: A0A0P1AIK5_PLAHL (Cyclin b1 interacting protein 1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AIK5_PLAHL)

HSP 1 Score: 90.9 bits (224), Expect = 2.090e-16
Identity = 62/193 (32.12%), Postives = 94/193 (48.70%), Query Frame = 0
Query:   14 RCNMCWN------EGNGSCYVTRCGHLFCESCAFRHFGQSQA-CPTCGHGLDESE--IQDLTL-GLEPSSVRRIVFEEALKEPNHHSSSQAALRTAELANETLGFLFSQMLLESQRGAEATSLLKGEVAKLKHEQGRVTMQMRNQNAAADQKHREMEHKLRVRTKELVDLQEAYKEKNRKCQAWEKAYANLRS 196
            RCN CW+      +   +CY T CGHLFCE CA++HFGQ +  CP C   L +    I + T+ GL  S     ++EE + +P+            E     L F+  Q+  +S R  E       E    K + G   +Q++      + + RE + K++  T    +L+EAYKEK+RKC+ WEK    L++
Sbjct:   46 RCNACWDPILPDSQSAETCYRTSCGHLFCEKCAYKHFGQGRLKCPACSVDLSQVRDGISETTIHGLANSKRTEAIWEEMMADPSS---------CFEHFQHALDFVLFQLAQDSFRQEEIRRQQADEQKAFKIQHGEKYIQLKTYTDQLEAELRETKSKMQALTASNDELREAYKEKSRKCRNWEKMCKTLKA 229          
BLAST of mRNA_Ecto-sp13_S_contig1342.2733.1 vs. uniprot
Match: A0A6A3YCA8_9STRA (RING-type domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3YCA8_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 5.850e-16
Identity = 63/199 (31.66%), Postives = 96/199 (48.24%), Query Frame = 0
Query:   14 RCNMCWN------EGNGSCYVTRCGHLFCESCAFRHFGQSQA-CPTC-------GHGLDESEIQDLTLGLEPSSVRRIVFEEALKEPNHHSSSQAALRTAELANETLGFLFSQMLLESQRGAEATSLLKGEVAK-LKHEQGRVTMQMRNQNAAADQKHREMEHKLRVRTKELVDLQEAYKEKNRKCQAWEKAYANLRSQ 197
            RCN CW       +   +CY T CGHLFCE CA++HFGQ +  CP C       G G+ E+ I     G+        ++EE + +P+            E   + L F+  Q+  +S    E     + E  K  + + G   +Q++N     + + RE + K++  T    +L+EAYKEK+RKC+ WEK    L+SQ
Sbjct:   47 RCNSCWEPILPDAQSAETCYRTSCGHLFCEKCAYKHFGQGRLQCPACSADLSQGGGGISETTIH----GVADPKRTEAIWEEMMADPSS---------CFEHFQQALDFILFQLAQDSYSRQEEIRRQQSEEQKTFQIQHGEKYIQLKNYTDQLEAELRETKSKMQALTTSNDELREAYKEKSRKCRNWEKMCKTLKSQ 232          
BLAST of mRNA_Ecto-sp13_S_contig1342.2733.1 vs. uniprot
Match: A0A6A3TDT0_9STRA (RING-type domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TDT0_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 5.880e-16
Identity = 63/199 (31.66%), Postives = 96/199 (48.24%), Query Frame = 0
Query:   14 RCNMCWN------EGNGSCYVTRCGHLFCESCAFRHFGQSQA-CPTC-------GHGLDESEIQDLTLGLEPSSVRRIVFEEALKEPNHHSSSQAALRTAELANETLGFLFSQMLLESQRGAEATSLLKGEVAK-LKHEQGRVTMQMRNQNAAADQKHREMEHKLRVRTKELVDLQEAYKEKNRKCQAWEKAYANLRSQ 197
            RCN CW       +   +CY T CGHLFCE CA++HFGQ +  CP C       G G+ E+ I     G+        ++EE + +P+            E   + L F+  Q+  +S    E     + E  K  + + G   +Q++N     + + RE + K++  T    +L+EAYKEK+RKC+ WEK    L+SQ
Sbjct:   47 RCNSCWEPILPDAQSAETCYRTSCGHLFCEKCAYKHFGQGRLQCPACSADLSQGGGGISETTIH----GVADPKRTEAIWEEMMADPSS---------CFEHFQQALDFILFQLAQDSYSRQEEIRRQQSEEQKTFQIQHGEKYIQLKNYTDQLEAELRETKSKMQALTTSNDELREAYKEKSRKCRNWEKMCKTLKSQ 232          
BLAST of mRNA_Ecto-sp13_S_contig1342.2733.1 vs. uniprot
Match: A0A6G0REX0_9STRA (RING-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6G0REX0_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 4.870e-12
Identity = 64/231 (27.71%), Postives = 107/231 (46.32%), Query Frame = 0
Query:   14 RCNMCWN------EGNGSCYVTRCGHLFCESCAFRHFGQSQA-CPTC-------GHGLDESEIQDLTLGLEPSSVRRIVFEEALKEPN----HHSSSQAALRTAEL--------ANETLGFLFSQMLL---ESQRGAEATSLL----------KGEVAKLKHEQ--------GRVTMQMRNQNAAADQKHREMEHKLRVRTKELVDLQEAYKEKNRKCQAWEKAYANLRSQ 197
            RCN CW       +   +CY T CGHLFCE CA++HFGQ +  CP C       G G+ E+ I  +    +P ++    +EE + +P+    H   +   + + ++         N  +  + S  ++    S R A +  L           + E+ + + E+        G   +Q++N     + + RE + K++  T    +L+EAYKEK+RKC+ WEK    L+SQ
Sbjct:   47 RCNSCWEPILPDAQSAETCYRTSCGHLFCEKCAYKHFGQGRLQCPACSADLSQGGGGISETTIHGVA---DPKAI----WEEMMADPSSCFEHFQQALGNVASVQMFRNIVDMCTNAVINKILSWYVVYARSSMRNANSFRLQFQLAQDSYSRQEEIRRQQSEEQKTFQIQHGEKYIQLKNYTDQLEAELRETKSKMQALTTSNDELREAYKEKSRKCRNWEKMCKTLKSQ 270          
BLAST of mRNA_Ecto-sp13_S_contig1342.2733.1 vs. uniprot
Match: W2QZI3_PHYPN (RING-type domain-containing protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QZI3_PHYPN)

HSP 1 Score: 61.6 bits (148), Expect = 4.170e-8
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 0
Query:   14 RCNMCWN------EGNGSCYVTRCGHLFCESCAFRHFGQSQA-CPTCGHGLDES 60
            RCN CW       +   +CY T CGHLFCE CA++HFGQ +  CPTC   L+++
Sbjct:   44 RCNACWEPILPDAQSAETCYRTSCGHLFCEKCAYKHFGQGRLQCPTCSVDLNQA 97          
BLAST of mRNA_Ecto-sp13_S_contig1342.2733.1 vs. uniprot
Match: A0A2P4XRP0_9STRA (Zinc ion binding protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XRP0_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 8.090e-8
Identity = 25/53 (47.17%), Postives = 32/53 (60.38%), Query Frame = 0
Query:   14 RCNMCWN------EGNGSCYVTRCGHLFCESCAFRHFGQSQA-CPTCGHGLDE 59
            RCN CW       +   +CY T CGHLFCE CA++HFGQ +  CP C  G ++
Sbjct:   47 RCNACWEPILPDAQSAETCYRTSCGHLFCEKCAYKHFGQGRLQCPACSVGKEQ 99          
BLAST of mRNA_Ecto-sp13_S_contig1342.2733.1 vs. uniprot
Match: A0A329S1I8_9STRA (RING-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S1I8_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.840e-7
Identity = 25/54 (46.30%), Postives = 32/54 (59.26%), Query Frame = 0
Query:   14 RCNMCWN------EGNGSCYVTRCGHLFCESCAFRHFGQSQA-CPTCGHGLDES 60
            RCN CW       +   +CY T CGHLFCE CA++HFGQ +  CP C   L ++
Sbjct:   47 RCNACWEPILPDAQSAETCYRTSCGHLFCEKCAYKHFGQGRLQCPACNIDLSQA 100          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1342.2733.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LDC0_ECTSI1.360e-25291.40RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JFE1_9PHAE5.920e-19467.30RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A833WTW3_PHYIN2.340e-1731.31Zinc-RING finger domain n=1 Tax=Phytophthora infes... [more]
A0A0P1AIK5_PLAHL2.090e-1632.12Cyclin b1 interacting protein 1 n=1 Tax=Plasmopara... [more]
A0A6A3YCA8_9STRA5.850e-1631.66RING-type domain-containing protein n=1 Tax=Phytop... [more]
A0A6A3TDT0_9STRA5.880e-1631.66RING-type domain-containing protein n=3 Tax=Phytop... [more]
A0A6G0REX0_9STRA4.870e-1227.71RING-type domain-containing protein n=2 Tax=Phytop... [more]
W2QZI3_PHYPN4.170e-848.15RING-type domain-containing protein n=6 Tax=Phytop... [more]
A0A2P4XRP0_9STRA8.090e-847.17Zinc ion binding protein n=1 Tax=Phytophthora palm... [more]
A0A329S1I8_9STRA1.840e-746.30RING-type domain-containing protein n=2 Tax=Phytop... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 170..197
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 13..57
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 15..53
e-value: 0.0018
score: 27.5
IPR001841Zinc finger, RING-typePFAMPF14634zf-RING_5coord: 14..54
e-value: 2.0E-7
score: 30.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 15..53
score: 10.394
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 10..101
e-value: 2.6E-9
score: 38.8
IPR042448E3 ubiquitin-protein ligase CCNB1IP1PANTHERPTHR14305E3 UBIQUITIN-PROTEIN LIGASE CCNB1IP1coord: 14..63
coord: 101..199
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 31..40

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1342contigEcto-sp13_S_contig1342:7842..14902 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1342.2733.1mRNA_Ecto-sp13_S_contig1342.2733.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1342 5995..17454 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1342.2733.1 ID=prot_Ecto-sp13_S_contig1342.2733.1|Name=mRNA_Ecto-sp13_S_contig1342.2733.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=399bp
MIQEGAPGHSLPHRCNMCWNEGNGSCYVTRCGHLFCESCAFRHFGQSQAC
PTCGHGLDESEIQDLTLGLEPSSVRRIVFEEALKEPNHHSSSQAALRTAE
LANETLGFLFSQMLLESQRGAEATSLLKGEVAKLKHEQGRVTMQMRNQNA
AADQKHREMEHKLRVRTKELVDLQEAYKEKNRKCQAWEKAYANLRSQTTD
PSRGGGFTPPESPRAGAMRGPSGSFNGGQGGSMQHQGPPRGVASPGGGGG
GGGGLGSAGMPRPGDRIRTNSPHSSNRGIAGYAAGGGRSSRPSWTMPRPN
TSRGGSGNGAAGDRVSPMLRPRDGQGHSSHSVTPSPTFSAQQGMSGGRFG
PKRPETPLEVRGYYSSRNASPGNRSSGAGGGAGARSSSFFPSSKAGLF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR042448CCNB1IP1
IPR017907Znf_RING_CS