mRNA_Ecto-sp13_S_contig1342.2733.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1342.2733.1 vs. uniprot
Match: D8LDC0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDC0_ECTSI) HSP 1 Score: 699 bits (1805), Expect = 1.570e-239 Identity = 372/407 (91.40%), Postives = 379/407 (93.12%), Query Frame = 3
Query: 135 MIQEGAPGHSLPHRCNMCWN---------EGNGSCYVTRCGHLFCESCAFRHFGQSQACPTCGHGLDESEIQDLTLGLEPSSVRRIVFEEALKEPNHHSSSQAALRTAELANETLGFLFSQMLLESQRGAEATSLLKGEVAKLKHEQGRVTMQMRNQNAAADQKHREMEHKLRVRTKELVDLQEAYKEKNRKCQAWEKAYANLRSQTTDPSRGGGFTPPESPRAGAMRGPSGSFNGGQGGSMQHQGPPRGVASPGGXXXXXXXLGSAGMPRPGDRIRTNSPHSSNRGIAGYAAGGGRSSRPSWTMPRPNTSRGGSGNGAAGDRVSPMLRPRDGQGHSSHSVTPSPTFSAQQGMSGGRFGPKRPETPLEVRGYYSSRNASPGNRSSGAGGGAGARSSSFFPSSKAGLF 1328
MIQEGAPG +LPHRCNMCWN EG GSCYVTRCGHLFCESCAFRHFGQSQACPTCGHGLDESEIQDLTLGLEPSS+RRIVFEEALKEPNHHSSSQAALRTAELANETLGFLFSQMLLE+QRGAEATS+LKGEVAKLKHEQGRVTMQMRNQNAAADQKHREMEHKLRVRTKELVDLQEAYKEKNRKCQAWEKAYANLRSQTTDPSRGGGFTPPESPRAGAMRGPSGSFNGGQGGSMQHQGP XXXXXX LG AGMPRPGDRI TNSPHSSNRG+AGYAAGGGRSSRPSW +PRPNTSRGGSGNGA GDRVSPMLRPRDGQGHSSHSVTPSPTFSAQQGMSGGRF PKRPETP+EVRGYYS RNASPGNRSSGAGGG GARSSSFFPSSKAGLF
Sbjct: 1 MIQEGAPGQTLPHRCNMCWNPHPVALPRQEGTGSCYVTRCGHLFCESCAFRHFGQSQACPTCGHGLDESEIQDLTLGLEPSSLRRIVFEEALKEPNHHSSSQAALRTAELANETLGFLFSQMLLENQRGAEATSVLKGEVAKLKHEQGRVTMQMRNQNAAADQKHREMEHKLRVRTKELVDLQEAYKEKNRKCQAWEKAYANLRSQTTDPSRGGGFTPPESPRAGAMRGPSGSFNGGQGGSMQHQGPXXXXXXXXXXXXXXXGLGVAGMPRPGDRIGTNSPHSSNRGVAGYAAGGGRSSRPSWPIPRPNTSRGGSGNGATGDRVSPMLRPRDGQGHSSHSVTPSPTFSAQQGMSGGRFAPKRPETPMEVRGYYS-RNASPGNRSSGAGGGVGARSSSFFPSSKAGLF 406
BLAST of mRNA_Ecto-sp13_S_contig1342.2733.1 vs. uniprot
Match: A0A6H5JFE1_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE1_9PHAE) HSP 1 Score: 551 bits (1421), Expect = 5.360e-182 Identity = 317/471 (67.30%), Postives = 324/471 (68.79%), Query Frame = 3
Query: 135 MIQEGAPGHSLPHRCNMCWNEGNGSCYVTRCGHLFCESCAFRHFGQSQACPTCGHGLDESEIQDLTLGLEPSSVRRIVFE------------------------------------------------------------------------EALKEPNHHSSSQAALRTAELANETLGFLFSQMLLESQRGAEATSLLKGEVAKLKHEQGRVTMQMRNQNAAADQKHREMEHKLRVRTKELVDLQEAYKEKNRKCQAWEKAYANLRSQTTDPSRGGGFTPPESPRAGAMRGPSGSFNGGQGGSMQHQGPPRGVASPGGXXXXXXXLGSAGM-PRPGDRIRTNSPHSSNRGIAGYAAGGGRSSRPSWTMPRPNTSRGGSGNGAAGDRVSPMLRPRDGQGHSSHSVTPSPTFSAQQGMSGGRFGPKRPETPLEVRGYYSSRNASPGNRSSGAGGGAGARSSSFFPSSKAGLF 1328
MIQEG PGHSLPHRCNMCWNEGNGSCYVTRCGHLFCESCAFRHFGQSQACPTCGHGLDESEIQDLTLGLEPSSVRRIVFE EALKEPN+HSSSQAALRTAELANETLGFLFSQMLLESQRGAEATSLLKGEVAKLKHEQGRVTMQMRNQNAAADQK REMEHKLRVRTKELVDLQEAYKEKNRKCQAWEKAYANLRSQ G + ++G RP ++ + RGIAGYAAGGGRSSRPSWTMPRPNTSRGG GNGAAGDRVSPMLRPRDGQGHSSHSVTPSPTFSAQQGMSGGRF PKRPETPLEVRGYYSSRNASPGNRSSGAGGG GARSSSFFPSSKAGLF
Sbjct: 1 MIQEGTPGHSLPHRCNMCWNEGNGSCYVTRCGHLFCESCAFRHFGQSQACPTCGHGLDESEIQDLTLGLEPSSVRRIVFERTTAVFSPDTAFFVCDPFPPSFSYPPNLTAYRSEYSNIFSEDLVINALSFQISTVSLPCFLPATHSNPPHHQEALKEPNYHSSSQAALRTAELANETLGFLFSQMLLESQRGAEATSLLKGEVAKLKHEQGRVTMQMRNQNAAADQKQREMEHKLRVRTKELVDLQEAYKEKNRKCQAWEKAYANLRSQ-------------------------------------------------GRRFHASRISASGRHARPFRLVQRRT----GRGIAGYAAGGGRSSRPSWTMPRPNTSRGGGGNGAAGDRVSPMLRPRDGQGHSSHSVTPSPTFSAQQGMSGGRFAPKRPETPLEVRGYYSSRNASPGNRSSGAGGGVGARSSSFFPSSKAGLF 418
BLAST of mRNA_Ecto-sp13_S_contig1342.2733.1 vs. uniprot
Match: A0A833WTW3_PHYIN (Zinc-RING finger domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WTW3_PHYIN) HSP 1 Score: 93.6 bits (231), Expect = 1.800e-16 Identity = 62/198 (31.31%), Postives = 101/198 (51.01%), Query Frame = 3
Query: 174 RCNMCWN------EGNGSCYVTRCGHLFCESCAFRHFGQSQA-CPTCGHGLDESE--IQDLTL-GLEPSSVRRIVFEEALKEPNHHSSSQAALRTAELANETLGFLFSQMLLESQRGAEATSLLKGEVAK----LKHEQGRVTMQMRNQNAAADQKHREMEHKLRVRTKELVDLQEAYKEKNRKCQAWEKAYANLRSQ 725
RCN CW + +CY T CGHLFCE CA++HFGQ + CP C L+E+ I + T+ G+ S ++EE + +P+ E + L F+ Q+ +S R ++ + A+ + + G +Q++N + + RE + K++ T +L+EAYKEK+RKC+ WEK L++Q
Sbjct: 47 RCNACWEPILPDVQSAETCYRTSCGHLFCEKCAYKHFGQGRLQCPVCSIDLNEARGGISETTIHGVADSKRTEAIWEEMMADPSS---------CFEHFQQALDFILFQLAQDSFRQVRVMEEIRRQQAEEQKAFQIQHGEKYIQLKNYTDQLEAELRETKSKMQALTTSNDELREAYKEKSRKCRNWEKMCKTLKAQ 235
BLAST of mRNA_Ecto-sp13_S_contig1342.2733.1 vs. uniprot
Match: A0A0P1AIK5_PLAHL (Cyclin b1 interacting protein 1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AIK5_PLAHL) HSP 1 Score: 91.3 bits (225), Expect = 1.660e-15 Identity = 62/193 (32.12%), Postives = 94/193 (48.70%), Query Frame = 3
Query: 174 RCNMCWN------EGNGSCYVTRCGHLFCESCAFRHFGQSQA-CPTCGHGLDESE--IQDLTL-GLEPSSVRRIVFEEALKEPNHHSSSQAALRTAELANETLGFLFSQMLLESQRGAEATSLLKGEVAKLKHEQGRVTMQMRNQNAAADQKHREMEHKLRVRTKELVDLQEAYKEKNRKCQAWEKAYANLRS 722
RCN CW+ + +CY T CGHLFCE CA++HFGQ + CP C L + I + T+ GL S ++EE + +P+ E L F+ Q+ +S R E E K + G +Q++ + + RE + K++ T +L+EAYKEK+RKC+ WEK L++
Sbjct: 46 RCNACWDPILPDSQSAETCYRTSCGHLFCEKCAYKHFGQGRLKCPACSVDLSQVRDGISETTIHGLANSKRTEAIWEEMMADPSS---------CFEHFQHALDFVLFQLAQDSFRQEEIRRQQADEQKAFKIQHGEKYIQLKTYTDQLEAELRETKSKMQALTASNDELREAYKEKSRKCRNWEKMCKTLKA 229
BLAST of mRNA_Ecto-sp13_S_contig1342.2733.1 vs. uniprot
Match: A0A6A3YCA8_9STRA (RING-type domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3YCA8_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 6.920e-15 Identity = 63/199 (31.66%), Postives = 96/199 (48.24%), Query Frame = 3
Query: 174 RCNMCWN------EGNGSCYVTRCGHLFCESCAFRHFGQSQA-CPTC-------GHGLDESEIQDLTLGLEPSSVRRIVFEEALKEPNHHSSSQAALRTAELANETLGFLFSQMLLESQRGAEATSLLKGEVAK-LKHEQGRVTMQMRNQNAAADQKHREMEHKLRVRTKELVDLQEAYKEKNRKCQAWEKAYANLRSQ 725
RCN CW + +CY T CGHLFCE CA++HFGQ + CP C G G+ E+ I G+ ++EE + +P+ E + L F+ Q+ +S E + E K + + G +Q++N + + RE + K++ T +L+EAYKEK+RKC+ WEK L+SQ
Sbjct: 47 RCNSCWEPILPDAQSAETCYRTSCGHLFCEKCAYKHFGQGRLQCPACSADLSQGGGGISETTIH----GVADPKRTEAIWEEMMADPSS---------CFEHFQQALDFILFQLAQDSYSRQEEIRRQQSEEQKTFQIQHGEKYIQLKNYTDQLEAELRETKSKMQALTTSNDELREAYKEKSRKCRNWEKMCKTLKSQ 232
BLAST of mRNA_Ecto-sp13_S_contig1342.2733.1 vs. uniprot
Match: A0A6A3TDT0_9STRA (RING-type domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TDT0_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 7.010e-15 Identity = 63/199 (31.66%), Postives = 96/199 (48.24%), Query Frame = 3
Query: 174 RCNMCWN------EGNGSCYVTRCGHLFCESCAFRHFGQSQA-CPTC-------GHGLDESEIQDLTLGLEPSSVRRIVFEEALKEPNHHSSSQAALRTAELANETLGFLFSQMLLESQRGAEATSLLKGEVAK-LKHEQGRVTMQMRNQNAAADQKHREMEHKLRVRTKELVDLQEAYKEKNRKCQAWEKAYANLRSQ 725
RCN CW + +CY T CGHLFCE CA++HFGQ + CP C G G+ E+ I G+ ++EE + +P+ E + L F+ Q+ +S E + E K + + G +Q++N + + RE + K++ T +L+EAYKEK+RKC+ WEK L+SQ
Sbjct: 47 RCNSCWEPILPDAQSAETCYRTSCGHLFCEKCAYKHFGQGRLQCPACSADLSQGGGGISETTIH----GVADPKRTEAIWEEMMADPSS---------CFEHFQQALDFILFQLAQDSYSRQEEIRRQQSEEQKTFQIQHGEKYIQLKNYTDQLEAELRETKSKMQALTTSNDELREAYKEKSRKCRNWEKMCKTLKSQ 232
BLAST of mRNA_Ecto-sp13_S_contig1342.2733.1 vs. uniprot
Match: A0A6G0REX0_9STRA (RING-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6G0REX0_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 2.790e-11 Identity = 64/231 (27.71%), Postives = 107/231 (46.32%), Query Frame = 3
Query: 174 RCNMCWN------EGNGSCYVTRCGHLFCESCAFRHFGQSQA-CPTC-------GHGLDESEIQDLTLGLEPSSVRRIVFEEALKEPN----HHSSSQAALRTAEL--------ANETLGFLFSQMLL---ESQRGAEATSLL----------KGEVAKLKHEQ--------GRVTMQMRNQNAAADQKHREMEHKLRVRTKELVDLQEAYKEKNRKCQAWEKAYANLRSQ 725
RCN CW + +CY T CGHLFCE CA++HFGQ + CP C G G+ E+ I + +P ++ +EE + +P+ H + + + ++ N + + S ++ S R A + L + E+ + + E+ G +Q++N + + RE + K++ T +L+EAYKEK+RKC+ WEK L+SQ
Sbjct: 47 RCNSCWEPILPDAQSAETCYRTSCGHLFCEKCAYKHFGQGRLQCPACSADLSQGGGGISETTIHGVA---DPKAI----WEEMMADPSSCFEHFQQALGNVASVQMFRNIVDMCTNAVINKILSWYVVYARSSMRNANSFRLQFQLAQDSYSRQEEIRRQQSEEQKTFQIQHGEKYIQLKNYTDQLEAELRETKSKMQALTTSNDELREAYKEKSRKCRNWEKMCKTLKSQ 270
BLAST of mRNA_Ecto-sp13_S_contig1342.2733.1 vs. uniprot
Match: W2QZI3_PHYPN (RING-type domain-containing protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QZI3_PHYPN) HSP 1 Score: 62.0 bits (149), Expect = 1.140e-7 Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 3
Query: 174 RCNMCWN------EGNGSCYVTRCGHLFCESCAFRHFGQSQA-CPTCGHGLDES 314
RCN CW + +CY T CGHLFCE CA++HFGQ + CPTC L+++
Sbjct: 44 RCNACWEPILPDAQSAETCYRTSCGHLFCEKCAYKHFGQGRLQCPTCSVDLNQA 97
BLAST of mRNA_Ecto-sp13_S_contig1342.2733.1 vs. uniprot
Match: A0A2P4XRP0_9STRA (Zinc ion binding protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XRP0_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 2.110e-7 Identity = 25/53 (47.17%), Postives = 32/53 (60.38%), Query Frame = 3
Query: 174 RCNMCWN------EGNGSCYVTRCGHLFCESCAFRHFGQSQA-CPTCGHGLDE 311
RCN CW + +CY T CGHLFCE CA++HFGQ + CP C G ++
Sbjct: 47 RCNACWEPILPDAQSAETCYRTSCGHLFCEKCAYKHFGQGRLQCPACSVGKEQ 99
BLAST of mRNA_Ecto-sp13_S_contig1342.2733.1 vs. uniprot
Match: A0A329S1I8_9STRA (RING-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S1I8_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 4.870e-7 Identity = 25/54 (46.30%), Postives = 32/54 (59.26%), Query Frame = 3
Query: 174 RCNMCWN------EGNGSCYVTRCGHLFCESCAFRHFGQSQA-CPTCGHGLDES 314
RCN CW + +CY T CGHLFCE CA++HFGQ + CP C L ++
Sbjct: 47 RCNACWEPILPDAQSAETCYRTSCGHLFCEKCAYKHFGQGRLQCPACNIDLSQA 100 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1342.2733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1342.2733.1 >prot_Ecto-sp13_S_contig1342.2733.1 ID=prot_Ecto-sp13_S_contig1342.2733.1|Name=mRNA_Ecto-sp13_S_contig1342.2733.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=399bp MIQEGAPGHSLPHRCNMCWNEGNGSCYVTRCGHLFCESCAFRHFGQSQACback to top mRNA from alignment at Ecto-sp13_S_contig1342:5995..17454+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1342.2733.1 ID=mRNA_Ecto-sp13_S_contig1342.2733.1|Name=mRNA_Ecto-sp13_S_contig1342.2733.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=11460bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1342:5995..17454+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1342:5995..17454+ >mRNA_Ecto-sp13_S_contig1342.2733.1 ID=mRNA_Ecto-sp13_S_contig1342.2733.1|Name=mRNA_Ecto-sp13_S_contig1342.2733.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1197bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1342:5995..17454+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |