mRNA_Ecto-sp13_S_contig10249.273.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10249.273.1
Unique NamemRNA_Ecto-sp13_S_contig10249.273.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10249.273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10249contigEcto-sp13_S_contig10249:2315..2841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size274
Hectar predicted targeting categoryother localisation
Exons2
Cds size183
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462518.9943573-UTR-Ecto-sp13_S_contig10249:2314..23351681462518.9943573-UTR-Ecto-sp13_S_contig10249:2314..2335Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10249 2315..2335 -
1681462519.021907-UTR-Ecto-sp13_S_contig10249:2771..28411681462519.021907-UTR-Ecto-sp13_S_contig10249:2771..2841Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10249 2772..2841 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462519.0032594-CDS-Ecto-sp13_S_contig10249:2335..23571681462519.0032594-CDS-Ecto-sp13_S_contig10249:2335..2357Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10249 2336..2357 -
1681462519.0131557-CDS-Ecto-sp13_S_contig10249:2610..27711681462519.0131557-CDS-Ecto-sp13_S_contig10249:2610..2771Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10249 2611..2771 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10249.273.1prot_Ecto-sp13_S_contig10249.273.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10249 2336..2771 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10249.273.1

>prot_Ecto-sp13_S_contig10249.273.1 ID=prot_Ecto-sp13_S_contig10249.273.1|Name=mRNA_Ecto-sp13_S_contig10249.273.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp
MLHSGDRFCSSRSLHDEESAIQQSMMHLRDSLGETAPSAGRHSEQHRHRA
FVNGRLGCRS*
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mRNA from alignment at Ecto-sp13_S_contig10249:2315..2841-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10249.273.1 ID=mRNA_Ecto-sp13_S_contig10249.273.1|Name=mRNA_Ecto-sp13_S_contig10249.273.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=527bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10249:2315..2841- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCTCCGAGGATATAGATCCCAATGTCCAGACGGTAGATTGATCTTGTAC
TCTGCTGTGGGTTGCATAATATGCTCCACTCCGGGGACCGATTTTGTTCG
TCTCGATCTCTCCACGACGAAGAGAGTGCCATACAGCAGTCAATGATGCA
TCTTCGGGACTCTCTTGGCGAGACAGCCCCCAGCGCCGGCCGACATTCCG
AGCAGCACCGTCACCGAGCTTTTGTCAATGGGTGTGTGGTAGCTTGCGCG
GCCTGCGGCGTGTTCAACTGCAAGAAGAGGACGTGTGCAGCACACCACCC
TCCCGTGTTTGACGCGATTTGGAAGCTTCAGTACAACGACACCCGCGGGC
GTTAACCGTCGAAAGTTGGTACCATGAAACAGTGGTATGTGTCACATTCT
TACGGTCGTGCCTCCCTCGTGTTCCCTCGTCTGTTTCGTCTTCTCTACCC
TCTACCCTTCTGGCCCCAATCGTGCCCGCCGCAGGAGACTCGGATGTCGT
TCGTGAAGCTGTCGGCGGGAAAACGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10249:2315..2841-

>mRNA_Ecto-sp13_S_contig10249.273.1 ID=mRNA_Ecto-sp13_S_contig10249.273.1|Name=mRNA_Ecto-sp13_S_contig10249.273.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10249:2315..2841- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCCACTCCGGGGACCGATTTTGTTCGTCTCGATCTCTCCACGACGA
AGAGAGTGCCATACAGCAGTCAATGATGCATCTTCGGGACTCTCTTGGCG
AGACAGCCCCCAGCGCCGGCCGACATTCCGAGCAGCACCGTCACCGAGCT
TTTGTCAATGGGAGACTCGGATGTCGTTCGTGA
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