mRNA_Ecto-sp13_S_contig13396.2716.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13396.2716.1
Unique NamemRNA_Ecto-sp13_S_contig13396.2716.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13396.2716.1 vs. uniprot
Match: D7G778_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G778_ECTSI)

HSP 1 Score: 546 bits (1408), Expect = 2.070e-194
Identity = 287/315 (91.11%), Postives = 293/315 (93.02%), Query Frame = 2 
Query:  185 MASIMGGGWKGLRVLVLFHVLARASAGGTVSINIKDLGAIEGIQSLDIRGNCDGQISKGVSGKASYVFNKDRVLPSGLSASSSTDTVYGKAFGTVTVDPQEKTAVMEGSIRNEELGMFSTTLKASEKEGGVLGPLKWTSNPVSFPFALQEATPMVIAIAHDINTKEGHLSIAAKLNSNFDGKLMLPSQGDPVATLVGSHSPDKASDVRASANVLDLLGSGFGKGAIGVTYRRDLDAVAPCPCSPSLDQHTPQLHRQGSSSRVTLEGKDTGDFAWSLSNTSKRMTLVLSGRGRVARRGEGTGVGSTVSLRQSFRMF 1129
            MA IMGGGWK LRVLVLFHVLARASAGGTVSINIKDLGAIEGIQSLDIRGN DGQ+SKGVSGKASYVFNKDRVLP+GLSASSSTDT YGKAFGTVTVDPQ+KTAV+EGSIRNEELGMFSTTLKASEKEGGVLGPLKWTSNPVSFPFALQEATPMVIAIAHDINTKEGHLSIAAKLNSNFDGKLMLPSQGDPVATLVGSHSPDKASD+RASANVLDL+GSGFGKGAIGVTYRRDLDAVA                  GSSSRVTLEGKDTGDFAWSLSNTSKRMTLVLSGRGRVARRGEGTGVGSTVSLRQSFRMF
Sbjct:    1 MAGIMGGGWKWLRVLVLFHVLARASAGGTVSINIKDLGAIEGIQSLDIRGNYDGQLSKGVSGKASYVFNKDRVLPAGLSASSSTDTAYGKAFGTVTVDPQDKTAVVEGSIRNEELGMFSTTLKASEKEGGVLGPLKWTSNPVSFPFALQEATPMVIAIAHDINTKEGHLSIAAKLNSNFDGKLMLPSQGDPVATLVGSHSPDKASDIRASANVLDLVGSGFGKGAIGVTYRRDLDAVA------------------GSSSRVTLEGKDTGDFAWSLSNTSKRMTLVLSGRGRVARRGEGTGVGSTVSLRQSFRMF 297
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13396.2716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G778_ECTSI2.070e-19491.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13396contigEcto-sp13_S_contig13396:708..3875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1132
Hectar predicted targeting categorysignal peptide
Exons7
Cds size948
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13396.2716.1prot_Ecto-sp13_S_contig13396.2716.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13396 708..3691 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462715.9510062-CDS-Ecto-sp13_S_contig13396:707..9411681462715.9510062-CDS-Ecto-sp13_S_contig13396:707..941Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13396 708..941 -
1681462715.961046-CDS-Ecto-sp13_S_contig13396:1253..13681681462715.961046-CDS-Ecto-sp13_S_contig13396:1253..1368Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13396 1254..1368 -
1681462715.969043-CDS-Ecto-sp13_S_contig13396:1728..19461681462715.969043-CDS-Ecto-sp13_S_contig13396:1728..1946Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13396 1729..1946 -
1681462715.9812064-CDS-Ecto-sp13_S_contig13396:2334..24151681462715.9812064-CDS-Ecto-sp13_S_contig13396:2334..2415Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13396 2335..2415 -
1681462715.9912803-CDS-Ecto-sp13_S_contig13396:2723..27871681462715.9912803-CDS-Ecto-sp13_S_contig13396:2723..2787Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13396 2724..2787 -
1681462716.0027494-CDS-Ecto-sp13_S_contig13396:3035..31231681462716.0027494-CDS-Ecto-sp13_S_contig13396:3035..3123Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13396 3036..3123 -
1681462716.0179079-CDS-Ecto-sp13_S_contig13396:3543..36911681462716.0179079-CDS-Ecto-sp13_S_contig13396:3543..3691Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13396 3544..3691 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462716.0279748-UTR-Ecto-sp13_S_contig13396:3691..38751681462716.0279748-UTR-Ecto-sp13_S_contig13396:3691..3875Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13396 3692..3875 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13396.2716.1

>prot_Ecto-sp13_S_contig13396.2716.1 ID=prot_Ecto-sp13_S_contig13396.2716.1|Name=mRNA_Ecto-sp13_S_contig13396.2716.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=316bp
MASIMGGGWKGLRVLVLFHVLARASAGGTVSINIKDLGAIEGIQSLDIRG
NCDGQISKGVSGKASYVFNKDRVLPSGLSASSSTDTVYGKAFGTVTVDPQ
EKTAVMEGSIRNEELGMFSTTLKASEKEGGVLGPLKWTSNPVSFPFALQE
ATPMVIAIAHDINTKEGHLSIAAKLNSNFDGKLMLPSQGDPVATLVGSHS
PDKASDVRASANVLDLLGSGFGKGAIGVTYRRDLDAVAPCPCSPSLDQHT
PQLHRQGSSSRVTLEGKDTGDFAWSLSNTSKRMTLVLSGRGRVARRGEGT
GVGSTVSLRQSFRMF*
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mRNA from alignment at Ecto-sp13_S_contig13396:708..3875-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13396.2716.1 ID=mRNA_Ecto-sp13_S_contig13396.2716.1|Name=mRNA_Ecto-sp13_S_contig13396.2716.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13396:708..3875- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTGCCCTGCTGCTGCTCTGACACTGCTGTGATCATTTTTCCGGGCGTCG
GTGTTGGACTCTCTTCTCTACCTCGACGATCAACCTGGATTCACCGTTGT
CCTACCACATTCAACTTCTACAGCAATCTACAGCGTTTCTGAGGCATTTG
CTTCCTCTCTCAAGCAGGCACGCCTGCAGCAGCAATGGCAAGCATCATGG
GAGGAGGCTGGAAGGGGCTGCGGGTTTTGGTGCTCTTTCATGTTCTCGCG
AGAGCGTCGGCGGGCGGGACAGTTTCGATCAACATCAAAGACCTGGGCGC
TATCGAAGGGATCCAATCGCTGGACATCCGAGGTTCGAAGCAAATGGCTT
GACTGCTGCGTACATGTTGCAGTGTACTTCGGTAGTAAGCTGAAGCGAGA
ACCTCTGTCTCAAGTAATTGCTCCAAAAACGCTGTGAAATGCACGGTATG
CAGCCAATGCCTTTCAAGTGGAAGCCAAGGTATGCGTACACATCTATTCA
ACCGCTGATGCAACTTTGTGTGGTGTATTCTGGACCACGGCATGTGGGTT
TGGCGGAGTGAAACATCGAAAGAGCAGTTAGTTATTTGGGCAAAATGTAC
GGTTCGTGCGTTACAGACATGCAACAGACGATGTCTCGCGTAAGGCGGAG
CTTGATCGTGTTCGTGCGATCGTCGTGAGGAGAGGACTCCAAGGGCCACC
AAAATTGGATCATCACCACTTGTCCTCCTGTTGGCACGCTTTTGCTCGTT
AGGGAACTGTGATGGGCAAATTTCCAAGGGCGTCAGTGGCAAGGCTTCGT
ACGTGTTCAACAAGGATCGCGTCTTGCCGTCTGGTCTAAGGTGCCGTCCC
CTAAACCTCGCATCGCGCCTCCCGCGTGTCTTTTCCTGATGACTGCTGTT
CAAGAATCAGTACCCAATAAATATGTGTACACCGCCTGTGCTGAGTCTAA
GTTCTTTAGCGCGCGATATGCGTCCATAACCATTTGCGTGGGGTCATCTA
TTTCTGACATGACTGTAATGATGATTTTCCGAGGAGGCGCTGAAACAAGT
TGCCTCTGGTTGGCCTCCCTTTTTTGTCCTTGCTGCAGCGCGTCATCGAG
CACGGACACCGTGTACGGAAAAGCCTTCGGGACGGTAACCGTCGACCCAC
AGGTAAATTGTCTCAACCCACCTTCGTTCGGCACTTTTGTTTGTAGCGGC
CGGACAGCCACAGAGCTACGCATGCATGCTCGGTACCCCAGGTAGCCTAC
GCCCACGAGATTTGCAATTGCTGAGGGACGTTGTGGCAGCAATGGCGTGT
TGTGAATCGTACAATAGGGCAGGCATGGAGCAGCAAGCGCCGGGGGGGTC
GGGTCTACACTACAGTTTCACTCCAGTTCCCCCGATATCGCTTCTCGCTC
AATATTATCTGCGTGTCGTCCCTGTATCCCTGGCCCGGCTGTCGTTTACG
ATTTCCGCAGGAAAAGACGGCCGTAATGGAAGGATCGATCCGGAACGAGG
AGCTTGGGATGTTTTCGACGACTTTGAAGGCCAGCGAGAAGGTGAGTACT
GCCAACATCGGGTATGCCCCTTCTGCCTGATCGTAGAACATGGCAACCGG
TTGTCGCTTCTCCCCTGCCGACAGTGGCTGCTGTTGTGCCTTCGTGTTGG
GCATGCTCTGAACAAGTCTGCTGTTGTATACCTTGCGCATGAACCATGCC
TTCGGAACAGCAAAACAGCAGTAGTACTGGCGTGTGCACGCTGAAGTCCT
CGCCCTTTGTCCAGCATTCCGTGCAAGGTCGCTGAGTGGCATAAACAATG
GTCGTGTTTGTGGCGCCGCTGGTTGGGACCCTGGCCTTGCCTTGACCAAC
AAGTTGAACTTCAAAACCCATCGACAATGTTCTTCTCAGTCCCCTAGTTC
TGTTTTCGTGTCCCCAAAACACTCGTCAGGAGGGCGGCGTGCTTGGCCCG
TTGAAGTGGACAAGCAACCCGGTGTCGTTTCCCTTCGCCTTGCAAGAAGC
CACCCCCATGGTGATCGCCATTGCTCACGACATCAACACGAAGGAGGGCC
ACCTTAGCATCGCGGCCAAGCTTAACAGCAACTTCGACGGGAAGCTGATG
CTCCCTTCTCAGGGAGACCCGGTCGCAACATTGGTGGGGTCGCACAGGTA
AACGTCTGCATGTGTCAATGTGTGCAGCAGCTGCAGCAGCAGTGTGGGCG
ATGTGAATTTAGAATTGTCTTGCAGTTGTGTGCGTGCCCCGTTCCACCGA
AAACTGGTTTCCTTGGTATTTCTCGGAACGCTACTTAGAAGCTGCGCTCT
TCACCTCGCCAATAGGCAGATGAGTATACTGCTGCCGCTTTGAAACGGCG
GCAGACTCTCCTTCCACCAGCATCACCAAGGGTACGTCCAGATGTGTCGT
GTGTTGTAGATGGAAGTCAAAGCCGTCCGCCAAGATTTCCTCACCCCGAC
GGGTATTTTGTCTCGGCAACCGTACGCGTGTGTGTTCTTCGTTTGTGCGA
CCCACAGCCCGGACAAAGCCTCGGACGTCCGGGCTTCCGCGAACGTGCTG
GACTTGTTGGGGTCGGGATTCGGCAAGGGGGCGATCGGCGTAACATACCG
ACGCGACTTGGACGCGGTTGCGGTGAGAGATCAACGCTTCTACGTAGATG
TGACAGACGTTAGGGAGGCGAGGTTTCGTGCAGACGAGGGGTTCGAGGTG
TTGGGGATGATGGATTGTGGCAGCAGATGTTTCGAGACTGGCCGGCCTGA
CTGTAGATAAAACTGTGTTGTTTTTCGCGAGCTGTTCGCGACAACTGCCG
CCATCTTGCGTTGTTGTATACCATCTAGAACCGTGACGGCATCTTTGATG
TGGAGCGCCACTAGTTATTTAACCGCTCGGAATTTGTTCAGCCTCTGTGC
GATGATCTGTCCTTGGTCACCCTGATCGGAGCAGCCGTGCCCGTGTTCTC
CTTCCCTCGACCAACACACGCCCCAACTCCATCGGCAGGGATCGAGCTCG
AGGGTAACGCTCGAAGGGAAGGACACTGGTGACTTTGCGTGGAGCCTGAG
CAACACCTCAAAGCGAATGACGCTAGTGCTTTCCGGCAGGGGCCGAGTTG
CCCGGAGAGGCGAGGGTACTGGAGTAGGGAGTACGGTCTCCCTCAGGCAG
AGCTTTCGGATGTTTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13396:708..3875-

>mRNA_Ecto-sp13_S_contig13396.2716.1 ID=mRNA_Ecto-sp13_S_contig13396.2716.1|Name=mRNA_Ecto-sp13_S_contig13396.2716.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=948bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13396:708..3875- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAAGCATCATGGGAGGAGGCTGGAAGGGGCTGCGGGTTTTGGTGCT
CTTTCATGTTCTCGCGAGAGCGTCGGCGGGCGGGACAGTTTCGATCAACA
TCAAAGACCTGGGCGCTATCGAAGGGATCCAATCGCTGGACATCCGAGGG
AACTGTGATGGGCAAATTTCCAAGGGCGTCAGTGGCAAGGCTTCGTACGT
GTTCAACAAGGATCGCGTCTTGCCGTCTGGTCTAAGCGCGTCATCGAGCA
CGGACACCGTGTACGGAAAAGCCTTCGGGACGGTAACCGTCGACCCACAG
GAAAAGACGGCCGTAATGGAAGGATCGATCCGGAACGAGGAGCTTGGGAT
GTTTTCGACGACTTTGAAGGCCAGCGAGAAGGAGGGCGGCGTGCTTGGCC
CGTTGAAGTGGACAAGCAACCCGGTGTCGTTTCCCTTCGCCTTGCAAGAA
GCCACCCCCATGGTGATCGCCATTGCTCACGACATCAACACGAAGGAGGG
CCACCTTAGCATCGCGGCCAAGCTTAACAGCAACTTCGACGGGAAGCTGA
TGCTCCCTTCTCAGGGAGACCCGGTCGCAACATTGGTGGGGTCGCACAGC
CCGGACAAAGCCTCGGACGTCCGGGCTTCCGCGAACGTGCTGGACTTGTT
GGGGTCGGGATTCGGCAAGGGGGCGATCGGCGTAACATACCGACGCGACT
TGGACGCGGTTGCGCCGTGCCCGTGTTCTCCTTCCCTCGACCAACACACG
CCCCAACTCCATCGGCAGGGATCGAGCTCGAGGGTAACGCTCGAAGGGAA
GGACACTGGTGACTTTGCGTGGAGCCTGAGCAACACCTCAAAGCGAATGA
CGCTAGTGCTTTCCGGCAGGGGCCGAGTTGCCCGGAGAGGCGAGGGTACT
GGAGTAGGGAGTACGGTCTCCCTCAGGCAGAGCTTTCGGATGTTTTAA
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