mRNA_Ecto-sp13_S_contig1338.2700.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Match: D7FSQ2_ECTSI (RNA_pol_Rbc25 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSQ2_ECTSI) HSP 1 Score: 389 bits (1000), Expect = 5.460e-134 Identity = 256/296 (86.49%), Postives = 257/296 (86.82%), Query Frame = 1
Query: 43 MFVLATIKDTVK-----------------VAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGGGLWSYPDXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWWE 879
MFVLATIKDTVK VAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYK VRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARG +WS XXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWWE
Sbjct: 1 MFVLATIKDTVKSPELVPGDCCLLRMTIWVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYK-----------------VRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGEWMWSXXXXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWWE 279
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Match: A0A835YK61_9STRA (RNA polymerase III subunit Rpc25-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK61_9STRA) HSP 1 Score: 221 bits (563), Expect = 3.340e-68 Identity = 134/280 (47.86%), Postives = 173/280 (61.79%), Query Frame = 1
Query: 43 MFVLATIKDTVKVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARG--GGLWSYPDXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWW 876
MFVLAT++D +KV P F LDVLT ++ K++++VI NVGL ICLHS+ES+GD VYPSDG+AHY+A FR+L+FRPFVGE+LTGK+ C++ GI VS+ FFE+ +IPK LL PSV+ + +W Y D DDS+ + + DE+RFRVRTL+FT+V +TA G QATTVST G XXXXXXXXX PP+ R+R TS+D+T EAP M+IT S+NE+GLGL SWW
Sbjct: 1 MFVLATVRDNLKVIPESFDRPTLDVLTEVVDMKYSNKVIINVGLAICLHSFESVGDALVYPSDGSAHYEAE-----------------FRLLMFRPFVGEVLTGKIGRCSETGITVSIGFFEDITIPKPLLCHPSVYHKRHKAWVWKYSDADADAADFNP---------------DDSYIMQVGDEIRFRVRTLDFTEVVNTANG-YQATTVSTGPQGGGGXXXXXXXXXRAKGLQEA--PPMGRQRSTSIDITTPAEAPPCMSITASINEDGLGLTSWW 245
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Match: A0A067CHA1_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CHA1_SAPPC) HSP 1 Score: 179 bits (455), Expect = 2.840e-52 Identity = 104/278 (37.41%), Postives = 150/278 (53.96%), Query Frame = 1
Query: 43 MFVLATIKDTVKVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGGGLWSYPDXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWW 876
MFVL I D +++AP F D VLT +I+ K+A++VIA+VGLCI L+ + IGD Y++PSDG +H + V FRM+VF+PF+GE+L GK+ SCT++ I+VS+DF ++ IP +Q+PS F + LW + + D + + LH+EVRFRV + FT+VT TA G +QAT A A+ R R +SVDL++ + PSAM I G+++E+GLGL SWW
Sbjct: 1 MFVLCRIADVIQIAPELFGTDYSSVLTEEIDRKYANKVIADVGLCITLYDFIEIGDAYIHPSDGTSHTE-----------------VVFRMVVFQPFIGEVLKGKIISCTEEHIRVSMDFVQDIIIPSYAMQTPSFFDKNERLWEW-------------------KFPGKEDEQDPYYMYLHEEVRFRVTNINFTRVTKTAKG-IQATVTEAADSASS------------------------RRRSSSVDLSEHDPKPSAMQIIGTIDEDGLGLSSWW 217
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Match: A0A7S3H250_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H250_9STRA) HSP 1 Score: 178 bits (452), Expect = 8.270e-52 Identity = 115/271 (42.44%), Postives = 160/271 (59.04%), Query Frame = 1
Query: 64 KDTVKVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGGGLWSYPDXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWW 876
+D +K AP +F DA +VL QIE K+A+RV+ +VGLCI + + SIGDPY+YPS+G+A VRFRM+VFRPFVGEI+TG++ S ++G+K+S +FFE+ IP LLQ+P V+ GLW++ E ++ F + + +EVRF+VRTL FTQ++S+ G L ATT S AGXXXXXXXXX P +R R +S+ L+ +E P+ M I G+MN+ GLGL+SWW
Sbjct: 1 EDKIKTAPDQFGRDAAEVLKEQIEIKYANRVLLHVGLCITFYDFISIGDPYLYPSEGSAIQI-----------------VRFRMVVFRPFVGEIITGRLVSSGREGLKISTEFFEDILIPAALLQAPCVYNPVDGLWTW----------------------KYGEPENDFLMDIGEEVRFKVRTLTFTQLSSSVKG-LTATTTSETGNDAGXXXXXXXXXPG----------PALRRRSSSMGLSPDDEIPAVMQIIGAMNDFGLGLISWW 221
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Match: K3WAI2_GLOUD (Uncharacterized protein n=21 Tax=Oomycota TaxID=4762 RepID=K3WAI2_GLOUD) HSP 1 Score: 177 bits (449), Expect = 2.410e-51 Identity = 105/278 (37.77%), Postives = 150/278 (53.96%), Query Frame = 1
Query: 43 MFVLATIKDTVKVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGGGLWSYPDXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWW 876
MFVL + D + V P F D VL +I+ K+A++VIA+VGLCI ++ + IGD +V+PSDG +H + V FRM+VFRPFVGE+L G++ SCT++ I+VS+DF ++ IP LQ+PS F LW + E + F + +H+E+RFRV + FT+VT TA G +QATT + AA GQ + R R +SVDL+D + PSA+ I G+++E+GLGL SWW
Sbjct: 1 MFVLTRLSDVIPVNPELFDADYTKVLVEEIDRKYANKVIADVGLCITIYDFVHIGDAFVHPSDGTSHSQ-----------------VEFRMVVFRPFVGEVLKGRIVSCTEEHIRVSMDFVQDIIIPSYALQTPSYFDTAERLWVW----------------------KYSEGQEKFYMDMHEEIRFRVTNINFTRVTKTANG-IQATTTEASDKAASE-----------------GQS-LARRRSSSVDLSDNDPTPSAIHILGTIDEDGLGLSSWW 220
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Match: A0A7S2SVH5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVH5_9STRA) HSP 1 Score: 176 bits (447), Expect = 6.680e-51 Identity = 108/285 (37.89%), Postives = 151/285 (52.98%), Query Frame = 1
Query: 43 MFVLATIKDTVKVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGGGLWSYPDXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQ------PPVVRERGTSVDLTDVEEA--PSAMTITGSMNEEGLGLLSW 873
MFVL+ ++D V+VAP KF D ++VL+ +++ K+A++VI N+GLCIC H ++SI + VYPSDG AH+ V FR++VFRPFVGE+ G + T QGI VSLDFFE+ IPK LL PS + LW + + D + ++VRF+V +++T+++ TA G + TT RGA+ GGQ P VR+R TSVDLTD EE P AM I GS+ + GLGL++W
Sbjct: 1 MFVLSVLRDVVRVAPDKFDRDLVEVLSEELDKKYANKVIPNIGLCICTHDFKSIEEAKVYPSDGGAHHS-----------------VVFRLIVFRPFVGEVAVGTIVRSTSQGIHVSLDFFEDVFIPKHLLPQPSEYDARAKLWVW----------------------KYEGSGDGGVFHVDEQVRFQVERVDYTELSDTARGVVATTTTVEHRGASA----------------GGGQGSIPPAQPFVRQRSTSVDLTDGEEQEEPPAMMIIGSVQDHGLGLVTW 230
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Match: A0A8K1CBB5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBB5_PYTOL) HSP 1 Score: 173 bits (439), Expect = 9.120e-50 Identity = 104/280 (37.14%), Postives = 149/280 (53.21%), Query Frame = 1
Query: 43 MFVLATIKDTVKVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGGGLWSYPDXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGG--QPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWW 876
MFVL I D + VAP F D VL +I+ K+A++VIA+VGLCI ++ + IGD +V+PSDG +H + V FRM+VFRPFVGE+L G++ SC ++ I+VS+DF ++ IP +Q+PS F LW + E + F + LH+E+RFRV ++ FT+VT TA G +QATT + N G + + R R SVDL+D + PSA+ I G+++E+GLGL SWW
Sbjct: 1 MFVLTRISDVIPVAPDLFEEDYQKVLVEEIDRKYANKVIADVGLCISIYDFVHIGDAFVHPSDGTSHSQ-----------------VEFRMVVFRPFVGEVLKGRIVSCNEEHIRVSMDFVQDIIIPSYAMQTPSYFDTTERLWVW----------------------KYSEGQEKFFMDLHEEIRFRVTSINFTRVTKTAHG-IQATTTEAS-------------DKTTDAAPNAGDMRQSLARGRSASVDLSDTDPTPSAIHILGTIDEDGLGLSSWW 227
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Match: A0A6G0XPV7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPV7_9STRA) HSP 1 Score: 169 bits (428), Expect = 3.720e-48 Identity = 102/278 (36.69%), Postives = 150/278 (53.96%), Query Frame = 1
Query: 43 MFVLATIKDTVKVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGGGLWSYPDXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWW 876
MFVL I D ++VAP F+ D VL +I+ K+A++VIA+VGLCI + + IGD Y++PSDG +H + V FRM+VFRPF+GEIL GK+ SCT++ I+VS+DF ++ IP +Q+PS F + LW + E D + + L++E+RFRV + FT+V TATG +QA T + + + P R R +SVDL++ + PSA+ I G+++E+GLGL SWW
Sbjct: 1 MFVLCRIADVIQVAPEFFAADYSSVLIEEIDRKYANKVIADVGLCITHYDFIEIGDAYIHPSDGTSHTE-----------------VIFRMVVFRPFIGEILKGKIISCTEEHIRVSMDFVQDIIIPSYAMQNPSFFDKTERLWEW-------------------KFPGREEGQDPYYMYLNEEIRFRVTNINFTRVLKTATG-IQAVTETA------------------DTIPDKRENPT-RRRSSSVDLSETDPKPSALQIVGTIDEDGLGLSSWW 222
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Match: A0A024URS8_9STRA (DNA-directed RNA polymerase n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024URS8_9STRA) HSP 1 Score: 166 bits (421), Expect = 4.160e-47 Identity = 98/278 (35.25%), Postives = 147/278 (52.88%), Query Frame = 1
Query: 43 MFVLATIKDTVKVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGGGLWSYPDXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWW 876
MFVL + D ++VAP FS D VL +I+ K+A++VIA+VGLCI + + IGD YV+PSDG +H V FRM+VFRPF+GEIL GK+ +CT++ I+VS++F ++ IP +Q+PS F + LW + ++ D + + L++EVRFRV + FT+V TA G T + + + + P R R +SVDL+D + P+A+ I G+++E+GLGL SWW
Sbjct: 1 MFVLCRVADVIQVAPELFSADYSSVLIEEIDRKYANKVIADVGLCITHYDFIEIGDAYVHPSDGTSHTD-----------------VIFRMVVFRPFIGEILKGKIINCTEEHIRVSMEFMQDIIIPSYAMQNPSFFDKTERLWEW-------------------KFPGREDDQDPYYMYLNEEVRFRVTNINFTRVLKTANGMQAVTEAADTK-------------------PDKSENPT-RRRSSSVDLSDTDPKPAALQIIGTIDEDGLGLSSWW 222
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Match: A0A6V1SWR7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SWR7_HETAK) HSP 1 Score: 163 bits (412), Expect = 3.150e-46 Identity = 99/217 (45.62%), Postives = 129/217 (59.45%), Query Frame = 1
Query: 43 MFVLATIKDTVKVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVF--ARGGGLWSYPDXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARG 687
MFVLA +KD+VK+ PS F + + LT +I+ K+A++VI +VGLCICL +E IGD Y+YP DG+AHYKA+ FR+LVFRPFVGEI+TG++SS +K+GIKVSL F ++ +P LLQ+PS F W Y D E D + + D RFRVRTL+FTQV +TA G LQA TVST+ G
Sbjct: 1 MFVLAVVKDSVKIHPSAFDKNQIQALTEEIDHKYANKVILDVGLCICLFDFEHIGDAYIYPLDGSAHYKAT-----------------FRLLVFRPFVGEIITGRISSQSKEGIKVSLGFTDDIIVPSYLLQAPSQFDPEERAWTWKYQDEDG--------------------EAQDML-MEVGDACRFRVRTLDFTQVKATAKG-LQAHTVSTSVG 178 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1338.2700.1 >prot_Ecto-sp13_S_contig1338.2700.1 ID=prot_Ecto-sp13_S_contig1338.2700.1|Name=mRNA_Ecto-sp13_S_contig1338.2700.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=280bp MFVLATIKDTVKVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSback to top mRNA from alignment at Ecto-sp13_S_contig1338:3324..8998+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1338.2700.1 ID=mRNA_Ecto-sp13_S_contig1338.2700.1|Name=mRNA_Ecto-sp13_S_contig1338.2700.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5675bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1338:3324..8998+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1338:3324..8998+ >mRNA_Ecto-sp13_S_contig1338.2700.1 ID=mRNA_Ecto-sp13_S_contig1338.2700.1|Name=mRNA_Ecto-sp13_S_contig1338.2700.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=840bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1338:3324..8998+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |