mRNA_Ecto-sp13_S_contig1338.2700.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1338.2700.1
Unique NamemRNA_Ecto-sp13_S_contig1338.2700.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Match: D7FSQ2_ECTSI (RNA_pol_Rbc25 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSQ2_ECTSI)

HSP 1 Score: 389 bits (1000), Expect = 5.460e-134
Identity = 256/296 (86.49%), Postives = 257/296 (86.82%), Query Frame = 1
Query:   43 MFVLATIKDTVK-----------------VAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGGGLWSYPDXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWWE 879
            MFVLATIKDTVK                 VAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYK                 VRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARG  +WS   XXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWWE
Sbjct:    1 MFVLATIKDTVKSPELVPGDCCLLRMTIWVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYK-----------------VRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGEWMWSXXXXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWWE 279          
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Match: A0A835YK61_9STRA (RNA polymerase III subunit Rpc25-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK61_9STRA)

HSP 1 Score: 221 bits (563), Expect = 3.340e-68
Identity = 134/280 (47.86%), Postives = 173/280 (61.79%), Query Frame = 1
Query:   43 MFVLATIKDTVKVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARG--GGLWSYPDXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWW 876
            MFVLAT++D +KV P  F    LDVLT  ++ K++++VI NVGL ICLHS+ES+GD  VYPSDG+AHY+A                  FR+L+FRPFVGE+LTGK+  C++ GI VS+ FFE+ +IPK LL  PSV+ +     +W Y D                         DDS+ + + DE+RFRVRTL+FT+V +TA G  QATTVST     G XXXXXXXXX          PP+ R+R TS+D+T   EAP  M+IT S+NE+GLGL SWW
Sbjct:    1 MFVLATVRDNLKVIPESFDRPTLDVLTEVVDMKYSNKVIINVGLAICLHSFESVGDALVYPSDGSAHYEAE-----------------FRLLMFRPFVGEVLTGKIGRCSETGITVSIGFFEDITIPKPLLCHPSVYHKRHKAWVWKYSDADADAADFNP---------------DDSYIMQVGDEIRFRVRTLDFTEVVNTANG-YQATTVSTGPQGGGGXXXXXXXXXRAKGLQEA--PPMGRQRSTSIDITTPAEAPPCMSITASINEDGLGLTSWW 245          
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Match: A0A067CHA1_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CHA1_SAPPC)

HSP 1 Score: 179 bits (455), Expect = 2.840e-52
Identity = 104/278 (37.41%), Postives = 150/278 (53.96%), Query Frame = 1
Query:   43 MFVLATIKDTVKVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGGGLWSYPDXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWW 876
            MFVL  I D +++AP  F  D   VLT +I+ K+A++VIA+VGLCI L+ +  IGD Y++PSDG +H +                 V FRM+VF+PF+GE+L GK+ SCT++ I+VS+DF ++  IP   +Q+PS F +   LW +                         +  D + + LH+EVRFRV  + FT+VT TA G +QAT    A  A+                         R R +SVDL++ +  PSAM I G+++E+GLGL SWW
Sbjct:    1 MFVLCRIADVIQIAPELFGTDYSSVLTEEIDRKYANKVIADVGLCITLYDFIEIGDAYIHPSDGTSHTE-----------------VVFRMVVFQPFIGEVLKGKIISCTEEHIRVSMDFVQDIIIPSYAMQTPSFFDKNERLWEW-------------------KFPGKEDEQDPYYMYLHEEVRFRVTNINFTRVTKTAKG-IQATVTEAADSASS------------------------RRRSSSVDLSEHDPKPSAMQIIGTIDEDGLGLSSWW 217          
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Match: A0A7S3H250_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H250_9STRA)

HSP 1 Score: 178 bits (452), Expect = 8.270e-52
Identity = 115/271 (42.44%), Postives = 160/271 (59.04%), Query Frame = 1
Query:   64 KDTVKVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGGGLWSYPDXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWW 876
            +D +K AP +F  DA +VL  QIE K+A+RV+ +VGLCI  + + SIGDPY+YPS+G+A                    VRFRM+VFRPFVGEI+TG++ S  ++G+K+S +FFE+  IP  LLQ+P V+    GLW++                         E ++ F + + +EVRF+VRTL FTQ++S+  G L ATT S     AGXXXXXXXXX            P +R R +S+ L+  +E P+ M I G+MN+ GLGL+SWW
Sbjct:    1 EDKIKTAPDQFGRDAAEVLKEQIEIKYANRVLLHVGLCITFYDFISIGDPYLYPSEGSAIQI-----------------VRFRMVVFRPFVGEIITGRLVSSGREGLKISTEFFEDILIPAALLQAPCVYNPVDGLWTW----------------------KYGEPENDFLMDIGEEVRFKVRTLTFTQLSSSVKG-LTATTTSETGNDAGXXXXXXXXXPG----------PALRRRSSSMGLSPDDEIPAVMQIIGAMNDFGLGLISWW 221          
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Match: K3WAI2_GLOUD (Uncharacterized protein n=21 Tax=Oomycota TaxID=4762 RepID=K3WAI2_GLOUD)

HSP 1 Score: 177 bits (449), Expect = 2.410e-51
Identity = 105/278 (37.77%), Postives = 150/278 (53.96%), Query Frame = 1
Query:   43 MFVLATIKDTVKVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGGGLWSYPDXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWW 876
            MFVL  + D + V P  F  D   VL  +I+ K+A++VIA+VGLCI ++ +  IGD +V+PSDG +H +                 V FRM+VFRPFVGE+L G++ SCT++ I+VS+DF ++  IP   LQ+PS F     LW +                         E  + F + +H+E+RFRV  + FT+VT TA G +QATT   +  AA                   GQ  + R R +SVDL+D +  PSA+ I G+++E+GLGL SWW
Sbjct:    1 MFVLTRLSDVIPVNPELFDADYTKVLVEEIDRKYANKVIADVGLCITIYDFVHIGDAFVHPSDGTSHSQ-----------------VEFRMVVFRPFVGEVLKGRIVSCTEEHIRVSMDFVQDIIIPSYALQTPSYFDTAERLWVW----------------------KYSEGQEKFYMDMHEEIRFRVTNINFTRVTKTANG-IQATTTEASDKAASE-----------------GQS-LARRRSSSVDLSDNDPTPSAIHILGTIDEDGLGLSSWW 220          
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Match: A0A7S2SVH5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVH5_9STRA)

HSP 1 Score: 176 bits (447), Expect = 6.680e-51
Identity = 108/285 (37.89%), Postives = 151/285 (52.98%), Query Frame = 1
Query:   43 MFVLATIKDTVKVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGGGLWSYPDXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQ------PPVVRERGTSVDLTDVEEA--PSAMTITGSMNEEGLGLLSW 873
            MFVL+ ++D V+VAP KF  D ++VL+ +++ K+A++VI N+GLCIC H ++SI +  VYPSDG AH+                  V FR++VFRPFVGE+  G +   T QGI VSLDFFE+  IPK LL  PS +     LW +                          + D     + ++VRF+V  +++T+++ TA G +  TT    RGA+                  GGQ       P VR+R TSVDLTD EE   P AM I GS+ + GLGL++W
Sbjct:    1 MFVLSVLRDVVRVAPDKFDRDLVEVLSEELDKKYANKVIPNIGLCICTHDFKSIEEAKVYPSDGGAHHS-----------------VVFRLIVFRPFVGEVAVGTIVRSTSQGIHVSLDFFEDVFIPKHLLPQPSEYDARAKLWVW----------------------KYEGSGDGGVFHVDEQVRFQVERVDYTELSDTARGVVATTTTVEHRGASA----------------GGGQGSIPPAQPFVRQRSTSVDLTDGEEQEEPPAMMIIGSVQDHGLGLVTW 230          
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Match: A0A8K1CBB5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBB5_PYTOL)

HSP 1 Score: 173 bits (439), Expect = 9.120e-50
Identity = 104/280 (37.14%), Postives = 149/280 (53.21%), Query Frame = 1
Query:   43 MFVLATIKDTVKVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGGGLWSYPDXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGG--QPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWW 876
            MFVL  I D + VAP  F  D   VL  +I+ K+A++VIA+VGLCI ++ +  IGD +V+PSDG +H +                 V FRM+VFRPFVGE+L G++ SC ++ I+VS+DF ++  IP   +Q+PS F     LW +                         E  + F + LH+E+RFRV ++ FT+VT TA G +QATT   +                     N G  +  + R R  SVDL+D +  PSA+ I G+++E+GLGL SWW
Sbjct:    1 MFVLTRISDVIPVAPDLFEEDYQKVLVEEIDRKYANKVIADVGLCISIYDFVHIGDAFVHPSDGTSHSQ-----------------VEFRMVVFRPFVGEVLKGRIVSCNEEHIRVSMDFVQDIIIPSYAMQTPSYFDTTERLWVW----------------------KYSEGQEKFFMDLHEEIRFRVTSINFTRVTKTAHG-IQATTTEAS-------------DKTTDAAPNAGDMRQSLARGRSASVDLSDTDPTPSAIHILGTIDEDGLGLSSWW 227          
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Match: A0A6G0XPV7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPV7_9STRA)

HSP 1 Score: 169 bits (428), Expect = 3.720e-48
Identity = 102/278 (36.69%), Postives = 150/278 (53.96%), Query Frame = 1
Query:   43 MFVLATIKDTVKVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGGGLWSYPDXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWW 876
            MFVL  I D ++VAP  F+ D   VL  +I+ K+A++VIA+VGLCI  + +  IGD Y++PSDG +H +                 V FRM+VFRPF+GEIL GK+ SCT++ I+VS+DF ++  IP   +Q+PS F +   LW +                         E  D + + L++E+RFRV  + FT+V  TATG +QA T +                       +  + P  R R +SVDL++ +  PSA+ I G+++E+GLGL SWW
Sbjct:    1 MFVLCRIADVIQVAPEFFAADYSSVLIEEIDRKYANKVIADVGLCITHYDFIEIGDAYIHPSDGTSHTE-----------------VIFRMVVFRPFIGEILKGKIISCTEEHIRVSMDFVQDIIIPSYAMQNPSFFDKTERLWEW-------------------KFPGREEGQDPYYMYLNEEIRFRVTNINFTRVLKTATG-IQAVTETA------------------DTIPDKRENPT-RRRSSSVDLSETDPKPSALQIVGTIDEDGLGLSSWW 222          
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Match: A0A024URS8_9STRA (DNA-directed RNA polymerase n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024URS8_9STRA)

HSP 1 Score: 166 bits (421), Expect = 4.160e-47
Identity = 98/278 (35.25%), Postives = 147/278 (52.88%), Query Frame = 1
Query:   43 MFVLATIKDTVKVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGGGLWSYPDXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWW 876
            MFVL  + D ++VAP  FS D   VL  +I+ K+A++VIA+VGLCI  + +  IGD YV+PSDG +H                   V FRM+VFRPF+GEIL GK+ +CT++ I+VS++F ++  IP   +Q+PS F +   LW +                         ++ D + + L++EVRFRV  + FT+V  TA G    T  +  +                    +  + P  R R +SVDL+D +  P+A+ I G+++E+GLGL SWW
Sbjct:    1 MFVLCRVADVIQVAPELFSADYSSVLIEEIDRKYANKVIADVGLCITHYDFIEIGDAYVHPSDGTSHTD-----------------VIFRMVVFRPFIGEILKGKIINCTEEHIRVSMEFMQDIIIPSYAMQNPSFFDKTERLWEW-------------------KFPGREDDQDPYYMYLNEEVRFRVTNINFTRVLKTANGMQAVTEAADTK-------------------PDKSENPT-RRRSSSVDLSDTDPKPAALQIIGTIDEDGLGLSSWW 222          
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Match: A0A6V1SWR7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SWR7_HETAK)

HSP 1 Score: 163 bits (412), Expect = 3.150e-46
Identity = 99/217 (45.62%), Postives = 129/217 (59.45%), Query Frame = 1
Query:   43 MFVLATIKDTVKVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVF--ARGGGLWSYPDXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARG 687
            MFVLA +KD+VK+ PS F  + +  LT +I+ K+A++VI +VGLCICL  +E IGD Y+YP DG+AHYKA+                 FR+LVFRPFVGEI+TG++SS +K+GIKVSL F ++  +P  LLQ+PS F        W Y D                       E  D   + + D  RFRVRTL+FTQV +TA G LQA TVST+ G
Sbjct:    1 MFVLAVVKDSVKIHPSAFDKNQIQALTEEIDHKYANKVILDVGLCICLFDFEHIGDAYIYPLDGSAHYKAT-----------------FRLLVFRPFVGEIITGRISSQSKEGIKVSLGFTDDIIVPSYLLQAPSQFDPEERAWTWKYQDEDG--------------------EAQDML-MEVGDACRFRVRTLDFTQVKATAKG-LQAHTVSTSVG 178          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1338.2700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSQ2_ECTSI5.460e-13486.49RNA_pol_Rbc25 domain-containing protein n=1 Tax=Ec... [more]
A0A835YK61_9STRA3.340e-6847.86RNA polymerase III subunit Rpc25-domain-containing... [more]
A0A067CHA1_SAPPC2.840e-5237.41Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
A0A7S3H250_9STRA8.270e-5242.44Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
K3WAI2_GLOUD2.410e-5137.77Uncharacterized protein n=21 Tax=Oomycota TaxID=47... [more]
A0A7S2SVH5_9STRA6.680e-5137.89Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8K1CBB5_PYTOL9.120e-5037.14Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0XPV7_9STRA3.720e-4836.69Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024URS8_9STRA4.160e-4735.25DNA-directed RNA polymerase n=4 Tax=Aphanomyces Ta... [more]
A0A6V1SWR7_HETAK3.150e-4645.62Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1338contigEcto-sp13_S_contig1338:3324..8998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score390.6
Seed ortholog evalue6.3e-106
Seed eggNOG ortholog2880.D7FSQ2
Preferred namePOLR3H
Model size882
KEGG rclassRC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01715,RC01734,RC02273,RC02795
KEGG koko:K00121,ko:K03022
KEGG ReactionR00435,R00441,R00442,R00443,R00623,R00754,R02124,R04880,R05233,R05234,R06917,R06927,R06983,R07105,R08281,R08306,R08310
KEGG Pathwayko00010,ko00071,ko00230,ko00240,ko00350,ko00625,ko00626,ko00680,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,ko03020,ko04623,ko05169,ko05204,map00010,map00071,map00230,map00240,map00350,map00625,map00626,map00680,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01200,map01220,map03020,map04623,map05169,map05204
KEGG ModuleM00181
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000428,GO:0000785,GO:0000790,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005694,GO:0006139,GO:0006351,GO:0006352,GO:0006383,GO:0006384,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0046483,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Exons7
EggNOG free text desc.transcription initiation from RNA polymerase III promoter
EggNOG OGsCOG1095@1,KOG3297@2759
Ec32 ortholog descriptionRNA polymerase Rpb7, N-terminal
Ec32 orthologEc-03_002970.1
EC1.1.1.1,1.1.1.284
Cds size840
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1338.2700.1prot_Ecto-sp13_S_contig1338.2700.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1338 3366..8998 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462714.8011465-UTR-Ecto-sp13_S_contig1338:3323..33651681462714.8011465-UTR-Ecto-sp13_S_contig1338:3323..3365Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1338 3324..3365 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462714.8155212-CDS-Ecto-sp13_S_contig1338:3365..34011681462714.8155212-CDS-Ecto-sp13_S_contig1338:3365..3401Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1338 3366..3401 +
1681462714.8256626-CDS-Ecto-sp13_S_contig1338:4773..49951681462714.8256626-CDS-Ecto-sp13_S_contig1338:4773..4995Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1338 4774..4995 +
1681462714.8353095-CDS-Ecto-sp13_S_contig1338:5486..55731681462714.8353095-CDS-Ecto-sp13_S_contig1338:5486..5573Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1338 5487..5573 +
1681462714.8461053-CDS-Ecto-sp13_S_contig1338:6069..61341681462714.8461053-CDS-Ecto-sp13_S_contig1338:6069..6134Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1338 6070..6134 +
1681462714.8555958-CDS-Ecto-sp13_S_contig1338:6833..70111681462714.8555958-CDS-Ecto-sp13_S_contig1338:6833..7011Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1338 6834..7011 +
1681462714.8677845-CDS-Ecto-sp13_S_contig1338:7327..74671681462714.8677845-CDS-Ecto-sp13_S_contig1338:7327..7467Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1338 7328..7467 +
1681462714.8768933-CDS-Ecto-sp13_S_contig1338:8886..89981681462714.8768933-CDS-Ecto-sp13_S_contig1338:8886..8998Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1338 8887..8998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1338.2700.1

>prot_Ecto-sp13_S_contig1338.2700.1 ID=prot_Ecto-sp13_S_contig1338.2700.1|Name=mRNA_Ecto-sp13_S_contig1338.2700.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=280bp
MFVLATIKDTVKVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHS
YESIGDPYVYPSDGAAHYKASGPRALLFPKRPLDPPVRFRMLVFRPFVGE
ILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGGGLWSYPDPD
AEDGEGDGDGGGNKGGEGSGAENDDSFSLTLHDEVRFRVRTLEFTQVTST
ATGSLQATTVSTARGAAGASGGGAGGGRGGGAAGNGGQPPVVRERGTSVD
LTDVEEAPSAMTITGSMNEEGLGLLSWWE*
back to top

mRNA from alignment at Ecto-sp13_S_contig1338:3324..8998+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1338.2700.1 ID=mRNA_Ecto-sp13_S_contig1338.2700.1|Name=mRNA_Ecto-sp13_S_contig1338.2700.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5675bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1338:3324..8998+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCAGAAGTCAGGCACCACCTCCCGTCATCGGGGGTGTAGGCGATGTTTGT GCTGGCAACGATCAAGGACACCGTGAAGGTGAAGTCTCAACGTGCAATAC GGTCAACTGCTGGCGCACTACACTGAACACTGCTGGTGTTTTCCGTATTT TCTGTTAGGCAGTAGAATAGAATCAGGATGTGTATCCCGGAGTCTTCGCC GACGTTTACGTTCACCAGTCCCCCGAGGTGGTGCCCGGGGACCACTGTCT GCTACGTATGATGATATGGGTGCGGAGACATTCAGCGAGTTCAAGCTGGC GACGTTTGGACCAAGTTTTGATGTGTGCGGCTACAGTTGGGATCTACACT GCGGTACCTCTCTCCTGTATACAAACACATGCAATGTCCACGGCCGTTGC TCAAACGATACACAACGGGCACTTCCCATCAGAAGTGAGCGGTTGGAACA AGGACTGATCGATCTTCAGTGGGGTATCTTGCTTGGAGGTCCTCTATTCA AGTGTTGAGCGTGTGCATGCATGGCACAACAAACCGTTTCGGCATGCGGC ACAACGTGGTGGGCATGCATATTATAAACATACCAACATGCATACATGGC TCTGCGCCATCGAAGAGCTAAAAGGGGGCAGACTGCTTTCCCATGACCCT GAAGGCATGTCAGCTTGAACTACCGAAGCGTCGCTGCCGCTACTATTTAC TGACGTCACCGGTTGCGCTAAGGCACTGTTACACCGGTGTCGTTTCGTAG GCTCTCGTTGCGTATAGGAGTCCCGGCAGGCAAGGCTACAACCTCAAGCC CCCTTTCAACCGCTCATTCGCTCTGTTTCTGTAACTCGAAAGACCTCTTT CACGAACCCCCAAAATGTTGCAGCCTTTGATTTGTACGGAAGCTAATCGC AGAGGGGCGTGGTTTAAAAGCGGCCTGCATCCAAACACATACACGAATTT TTACACCTACAACCTCTGATGTTGTTAACTACCGTACTACTGTGGTACCA GTCAAAAAATCTTGTGCCGACCAGATGCTGCTCATGGGCAGCTGCAGCAG CAGCAGAAATTGCGGCAATTTGACGCTGACCCATGTCGACCCACACATGG GTGATAGTACGCGGTTGGGGGGAAAGGCATTGCGCCGTTTCGCAGTTGGT GGCAGCTATGTAGAACACGTACTGACGGCGATGCTTGAAATGTCGAGAAC TTGCCGGGACACCTCCCAAAAAAATGCGGCGCCGTGACCATGCACAGAGT TGGGATGTACCCGACGAAGTGGTCGAAAGAGCACACCGATGACCGCTCCG TCTGCTAAGGAAGAAACACCGCCACAAGATTCGTTGTAGACAGGTTTCGC TAGATACTCGAAATTTTCATATTTTCTGTTGGTTCTTCGCAGGTGGCCCC GAGCAACTTTAACGGCGACGCAACGTTTTGTTTTGTTTTTTGCTTCGAAG GTTGCCCCGAGCAAGTTCAGCGGCGACGCCTTGGACGTGCTGACGGCGCA GATAGAGGCCAAGTTCGCGGACAGGGTCATCGCGAACGTCGGCCTCTGCA TCTGCCTGCACAGCTACGAGAGCATCGGGGACCCCTACGTCTACCCCTCC GACGGCGCTGCGCACTATAAGGCAAGCGGACCACGGGCCTTGCTGTTTCC GAAGAGGCCTCTGGACCCTCCTGTTCGTCTAGACCCTCTTCTCCATTCTA CCTCACGATCCGCGTCGGAACGGTTTCACATTGTTCGGAGAAACCGAACG GGTCTTGCTTTTCCGAAGGCCTGAGGACCTCGTCTTTGTCTCGGCCTCGT TTCCTCTGTTAGTAGGTCTCTTGTTCATCTACAGAACTTTTCTTCTTTCC ACCTCGCCAACCGCGTCTGAATGGTCGTACTTTGTTCGGGGTGCACAAAA ACAAAAAATTGACGAAAGCATTTTGCCAAAGACGTGCATTTTAGTTCCAA GAGTGGCAGTACGTTGTGGCTTGTAGTAGATGCTCATTGACAACGACTCC GCGCGGTATATAGGGCCAAGGGAGGCGTTTGGCAACACCCTATGTCGGGA CGGAGCTTTTCGCCGAATCACGCAGAAACGGCCATTTACAACGGTCCTTT CACCGCACGTATCTATGAAACCCTTCGGATTGCTCTGGTTACTTCTTCAC GACCCGGCTGAAGGTGCGGTTTCGGATGCTGGTGTTCCGGCCCTTCGTGG GCGAGATCCTAACCGGGAAGGTCTCCTCGTGCACCAAGCAGGGCATCAAG GTGCTCCGTGCGTGTGTGTGTCGCCGGGGATGGTATTGATGCTGGTATTT GTTGCTGTTGGTTGTTAGTCGTGTTGTCGGGTCTGTCGCTTATCTTGCTG TGTCGTGGTGAGCTAAGACCGGTTTCATGTAGTTTTAGAATACCCGTTTT ACGAAAAGGAGAGAGAAATGTACATGACTGCATTGGGAAATGTGTAAGGA AGTTAGAAGAGAGAAGTTTGAGGTTTGGCAGACAAGGAGACGACTGGGGC AAAGGAAGTGGCTGAAAAGGCGGGAAGTGAAATCGACAGGATAGATACGC TACGGAAAACGTTTTGGAGTCAACTTTGGCAAAGTAGGAAGGAACGATTA GCCGTCCGTGATCGTTCCTACGGGAACAATGCTCCATGATCTCGAGGACG TGTGGTCAATGGTCTAACCGCTAAGGCACCTCAAAACATGACCCCCCCCC CTACTCCGTCCTGGCGCCATCGATTTACCCGTTGCATGTCTCTCAGGTGT CACTCGATTTCTTCGAGAACGCTTCCATACCAAAGGATCTCCTTCAATCC CCGTCTGTCTTGTAAGTTTTCGCCTGGTATTTGCTGCGTTATGTACCCCT CGCACAAACGCACACCCAGGACTGGTTGGTGTTTTGCGCTGACAACACAG GGAACCGCACGATGAAGTAGCTGATGGTAGAAACGGCGGTCTGGACGTAA AATCTGTCACGAGTTGTTGCAAATGCCTACTGTAGGCTCGTGGGGGCGAA CGATGGAATTTTTCTTCCAGTAAAAAGGCGTTGCTTGCGGCAAAGTTTTG CCGCAAGCATGTGCACCAGCGGTATTGTCGCGTCCGTTGCACGCTGGAGG CGTCCATGTCCCGGGTGAGGTCTATGTGGAATGGTCCTCCGCGCCCCGTG GCTCTCACCCGCTTTGCCGAGGAGAGCGACCTCACCCTCGTCGCAAGTTT TCGTAGCAAATGTTGTGCCAACCAAGAGGGTACCCGAGTGTTGAGTAGTG CTGCTGTGTATCGGCCTACGCTGCTTTTGCCGACCGATGCTGCACCATCC CGCCCAAACGTCTTGATTGCGGCTTCATGTAAATACTTCAGAAGGTTGAC ATTCGGGGACTGTCGAAGAAAATTATTGGCGTTTCAGCTGCCAACCTGCC TACGTCCCACCAAACTCAAGTATTGTTCTTTCAAAACCAGCATCCATATC TCCAGAGATCCCCCCCCCCCCCCCCCCCCCCCCTTCATGTATGCCTGCCT CTTCGAACAGCGCCCGGGGGGGGGGGTTGTGGTCGTATCCCGACCCGGAC GCGGAGGACGGGGAAGGGGACGGAGATGGGGGCGGAAACAAAGGGGGGGA AGGTAGCGGGGCGGAGAACGACGATTCGTTCTCGCTGACCCTGCACGACG AAGTGCGGTTCCGAGTGAGAACGCTGGAGTTCACGCAGGTGGGTCTTGTC ATGCAGGTCAATGGAAGAGGGAGTTGCCCCCCCCCCCCCCCCTACAAAGT AGGAAGGAACGATGACCATCGGTGATCGGTCCTGTGGGCACAATGCTCCG TCCTCTCGAGGACGCGTGGTCAATGGTCTAACGCTAAGGCATGCAAAACA TAAGAGTACGTCCCCCCCCCCCTACAACTCTCTGTCCCATGTTGCACGTA TCCTCGTGGAGGTATAGAGTCTTTTTGAGGCCCGGAAGCGTAGAATAGAC AAGCGCTGAGGATGACTTCTGTGCCTGACGTTCCCCGGTCATGGCGCGAT GCAGGTGACGTCGACAGCAACGGGCAGTTTGCAGGCCACCACGGTGTCCA CGGCACGAGGAGCAGCAGGCGCCTCCGGGGGGGGTGCGGGCGGGGGCAGA GGCGGCGGCGCGGCTGGGAACGGGGGGCAACCACCAGTAGTGAGGTGAGT GTAATTGCGTTCAAAAGCTTGAAACTCTCACCTTTTACCTTCGCTCTCAG TTCGCGGACGTGACAACTCACGGAGGCCTGAGCTGGATTCCTGTGTCTTG TCTCTCTCTCTCTGTCTCTCGCGCTGATGTCTCGAGACCGGATCTTGGCT TGGTTGGAGCTCCGATTAACGTTCAAACGGTCGCGATGCGTTCGAATGTC ACGACGGTTCGTGATACGAACGACAAGTGGACAAGTATGCACGTGACACG TTGACAGTGGACAGTGGTCATGTTCACAGGGTTCTTTCACTTCGTTCACG GGAGGTGGTTTTTGACTGAAAACCAGGTGCTTGGTTGACAGGCTTCGACC CCGAGACTGCTTCCTCAAAGAAACACAACTGTTGCCCGTTCGTTGAAGCT GTCGGGCCTGACTCCTGACATTTCGGCATATTTATCATACTTGGCGTGCT CATACACACAAGCTGCCATAACACGAGTATCATATTTATTGGCAACAAAG AAAACGTTTTCTTACGATTGGAAAGTTATTTGTTGGGCCTGTTGTGCTCG ACAATGTGTGGATGGCGCCGTTGTCCTCCTCGATATTTTCAGCCGCTCCC GCGCTTGATCCACCCACATGAGTATGTTGGTACTAAGCAATAAGTACAGC CTTTCGGTCAGACAGTGGATGAAGAACACTTGTTTGTTGTGCCAGCGACC TCAGCTGTCCTTTTTTTTGTCCTTGTGATCATGGCGTAAACTATCGCTCT TCAACCGGACAACTAAGGCCAACGTTGTTGGAAGACCGCTCCGGGATAGT AGCGCCGCCAAAGGGTGCACTGTTTGTTGTACGTTGTCGGCAGCGCTGTT TTCATTGTTCCTGTTGCTGTAGTTGCTGCTGCTGGTGCTGTTTTTGTTGT TGTTTTGGGTGTCTGCAAGAAACGGCCTGGCCTCTATCAAGCACCACTCT CCCGTCGTCGTCAAAATGCACAGCACTACATGCAACGATTCCCCGTGGTC ACGAGCCCAAAACATGGTACAACACTCCAATTGAAGAAGACCTGAGATCG AAGAAGAGACGAACACGTCAACCGTTGAACGTTCCCAGCGTACAGTAGCA AGTCCAGAATTCTTGAAGCGGTGAAAGCCAAGAGAATGGAAATGGCGTGG GACCCAAAATGTCACATGAAAGCCGAGCCAGACGATGGATGCACACATGC CACTACCACACTAGGGCTGAAGAAGCCAATTCTCCTACCCCTTAGCGGGT AGTCAACAGCATGCCATACACATGAGAAGTTTTTAGATTGTCATGCACGA CTGGCTTTTTCCGCGCGCTCCTTACCGGCCGAACCCCCCCGTGCACAACC CACGGCAACCACAACCCAAACCTTTGCGGCCACCCCACCCCTCTTTGCTC CGCGCTTTCGCAGAGAACGAGGGACTAGCGTAGATCTAACTGATGTCGAG GAGGCGCCTTCCGCCATGACTATCACTGGCAGCATGAACGAAGAAGGCCT AGGCCTGTTGTCGTGGTGGGAATGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1338:3324..8998+

>mRNA_Ecto-sp13_S_contig1338.2700.1 ID=mRNA_Ecto-sp13_S_contig1338.2700.1|Name=mRNA_Ecto-sp13_S_contig1338.2700.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=840bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1338:3324..8998+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTGTGCTGGCAACGATCAAGGACACCGTGAAGGTTGCCCCGAGCAA
GTTCAGCGGCGACGCCTTGGACGTGCTGACGGCGCAGATAGAGGCCAAGT
TCGCGGACAGGGTCATCGCGAACGTCGGCCTCTGCATCTGCCTGCACAGC
TACGAGAGCATCGGGGACCCCTACGTCTACCCCTCCGACGGCGCTGCGCA
CTATAAGGCAAGCGGACCACGGGCCTTGCTGTTTCCGAAGAGGCCTCTGG
ACCCTCCTGTGCGGTTTCGGATGCTGGTGTTCCGGCCCTTCGTGGGCGAG
ATCCTAACCGGGAAGGTCTCCTCGTGCACCAAGCAGGGCATCAAGGTGTC
ACTCGATTTCTTCGAGAACGCTTCCATACCAAAGGATCTCCTTCAATCCC
CGTCTGTCTTCGCCCGGGGGGGGGGGTTGTGGTCGTATCCCGACCCGGAC
GCGGAGGACGGGGAAGGGGACGGAGATGGGGGCGGAAACAAAGGGGGGGA
AGGTAGCGGGGCGGAGAACGACGATTCGTTCTCGCTGACCCTGCACGACG
AAGTGCGGTTCCGAGTGAGAACGCTGGAGTTCACGCAGGTGACGTCGACA
GCAACGGGCAGTTTGCAGGCCACCACGGTGTCCACGGCACGAGGAGCAGC
AGGCGCCTCCGGGGGGGGTGCGGGCGGGGGCAGAGGCGGCGGCGCGGCTG
GGAACGGGGGGCAACCACCAGTAGTGAGAGAACGAGGGACTAGCGTAGAT
CTAACTGATGTCGAGGAGGCGCCTTCCGCCATGACTATCACTGGCAGCAT
GAACGAAGAAGGCCTAGGCCTGTTGTCGTGGTGGGAATGA
back to top