mRNA_Ecto-sp13_S_contig13379.2699.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13379.2699.1
Unique NamemRNA_Ecto-sp13_S_contig13379.2699.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13379.2699.1 vs. uniprot
Match: A0A6H5JCY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY0_9PHAE)

HSP 1 Score: 474 bits (1219), Expect = 3.590e-154
Identity = 258/303 (85.15%), Postives = 265/303 (87.46%), Query Frame = 1
Query:    4 EPPNLKRQSLRFPPVTHQWSGGHCGRFSSDSIPLPARLPTPDPLVEDNLVSAKKTSQALTPRPPPTDPLVQAFSLHVFAKRPIEPINSLGDFRRAIMKRIALAALQIRLSVNSRKDPPFLSVEFNQLDSPREGCAVCFLDMTAEPAKWKDAVKFAVREVRRLGMFGLTNGELTRFSSALLTDARQLAAQGNRISNSEQQLNFLMDTVASGHTFMDTEQTYHATRLVIESLTLEELNEVAAELCEHITLFGVPQANKPSAVVACVPTAMKVPEIGPNGEESTEAMELSEEDVVAAFVEGVNEEV 912
            EPPNLKRQSLRFPPVTHQWSGGH    ++        LP  +P      V  K       PR    D L+QAFSLHVFAKRPIEPI SLGDFRRAIMKRIALAALQIRLSVNSRKDPPFLSVEFNQLDSPREGCAVCFLDMTAEPAKWKDAVKFAVREVRRLGMFGLT+GEL RFSSALLTDARQLAAQGNRISNSEQ LNFLMDTVASGHTFMDTEQTYHATRLVIESLTLEELNEVAAELCEHITLFGVPQANKPSAVVACVPTAMKVP IGPNGEESTEAMELSEEDVVAAF+EGVNEE+
Sbjct:  502 EPPNLKRQSLRFPPVTHQWSGGHVTERNT--------LPVMEP------VDGKPLG---VPRFYKHD-LLQAFSLHVFAKRPIEPITSLGDFRRAIMKRIALAALQIRLSVNSRKDPPFLSVEFNQLDSPREGCAVCFLDMTAEPAKWKDAVKFAVREVRRLGMFGLTSGELKRFSSALLTDARQLAAQGNRISNSEQ-LNFLMDTVASGHTFMDTEQTYHATRLVIESLTLEELNEVAAELCEHITLFGVPQANKPSAVVACVPTAMKVPAIGPNGEESTEAMELSEEDVVAAFIEGVNEEI 785          
BLAST of mRNA_Ecto-sp13_S_contig13379.2699.1 vs. uniprot
Match: A0A836C760_9STRA (Stromal processing peptidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C760_9STRA)

HSP 1 Score: 347 bits (889), Expect = 6.180e-108
Identity = 188/302 (62.25%), Postives = 225/302 (74.50%), Query Frame = 1
Query:    7 PPNLKRQSLRFPPVTHQWSGGHCGRFSSDSIPLPARLPTPDPLVEDNLVSAKKTSQALTPRPPPTDPLVQAFSLHVFAKRPIEPINSLGDFRRAIMKRIALAALQIRLSVNSRKDPPFLSVEFNQLDSPREGCAVCFLDMTAEPAKWKDAVKFAVREVRRLGMFGLTNGELTRFSSALLTDARQLAAQGNRISNSEQQLNFLMDTVASGHTFMDTEQTYHATRLVIESLTLEELNEVAAELCEHITLFGVPQANKPSAVVACVPTAMKVPEIGPNGEESTEAMELSEEDVVAAFVEGVNEEV 912
            P  LK QS  FPPVTH WSGGH    ++        LP  D      L + +  S  L          +QAFS+HVFAKRPIEP+ SLGD RRA+MKRIALAALQIRLSVNSR DPPF  +EFNQLDSPREGCAVC+LDMTA+PA+W++AV+ AVRE+RRLGM+GLT GELTRFSSALLTDA+QLAAQG+RISNSEQ L FLM++VAS HTFMD +QTY ATRLV+ESLTL E+NEVAAE+CEHITL+GVP   +PSAVVACVP+           +++    +L E+ +V A +EGV+EE+
Sbjct:  242 PITLKHQSKHFPPVTHVWSGGHVTEANT--------LPVMDTFDGKPLHAPRLFSHDL----------LQAFSMHVFAKRPIEPVTSLGDLRRAVMKRIALAALQIRLSVNSRTDPPFSMIEFNQLDSPREGCAVCYLDMTADPARWREAVRVAVREIRRLGMYGLTVGELTRFSSALLTDAQQLAAQGDRISNSEQ-LTFLMESVASDHTFMDAQQTYEATRLVVESLTLGEVNEVAAEICEHITLYGVPGGPQPSAVVACVPS-----------KDTQGTAQLDEDQLVEAIMEGVSEEI 513          
BLAST of mRNA_Ecto-sp13_S_contig13379.2699.1 vs. uniprot
Match: W7U2D5_9STRA (Peptidase M16 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2D5_9STRA)

HSP 1 Score: 269 bits (688), Expect = 1.850e-78
Identity = 145/270 (53.70%), Postives = 188/270 (69.63%), Query Frame = 1
Query:    1 QEPPNLKRQSLRFPPVTHQWSGGHCGRFSSDSIPLPARLPTPDPLVEDNLVSAKKTSQA---LTPRPPPTDPLVQAFSLHVFAKRPIEPINSLGDFRRAIMKRIALAALQIRLSVNSRKDPPFLSVEFNQLDSPREGCAVCFLDMTAEPAKWKDAVKFAVREVRRLGMFGLTNGELTRFSSALLTDARQLAAQGNRISNSEQQLNFLMDTVASGHTFMDTEQTYHATRLVIESLTLEELNEVAAELCEHITLFGVPQANKPSAVVACVPT 801
            QEPP LK QS  FPPVTH +SGG   RF+  S+P   +     P   +  VS K    A   LTPR    +  +QAFS H+FAKRPIE + +L D+RR++MKRIA+ ALQIRL+V +R DPPF  +EFNQLDS RE CAVC LD+ AEP KW+ AV  AVRE+RRLGM+GL+  EL R+ +A+L D+ Q AAQG RISNS+Q LN LM+++A GH FM+  Q   A  LV++S+T+EE+NEVAAE+C+H+T +    ++ PSA VA  P+
Sbjct:  396 QEPPTLKLQSRHFPPVTHYFSGGKFDRFADASLPAELKTFGRSPRTSEESVSDKADGNAARDLTPRIFQHEN-IQAFSFHLFAKRPIEAVQTLADYRRSVMKRIAILALQIRLNVLARDDPPFTFIEFNQLDSAREACAVCNLDVLAEPEKWEKAVSLAVREIRRLGMYGLSESELNRYITAMLRDSTQHAAQGERISNSDQ-LNQLMESIACGHVFMEPTQQCDAVELVLKSITVEEVNEVAAEICQHLTDYASGASSPPSACVATCPS 663          
BLAST of mRNA_Ecto-sp13_S_contig13379.2699.1 vs. uniprot
Match: A0A7S2VA48_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VA48_9STRA)

HSP 1 Score: 237 bits (605), Expect = 1.640e-68
Identity = 121/207 (58.45%), Postives = 161/207 (77.78%), Query Frame = 1
Query:  208 LVQAFSLHVFAKRPIEPINSLGDFRRAIMKRIALAALQIRLSVNSRKDPP-FLSVEFNQLDSPREGCAVCFLDMTAEPAKWKDAVKFAVREVRRLGMFGLTNGELTRFSSALLTDARQLAAQGNRISNSEQQLNFLMDTVASGHTFMDTEQTYHATRLVIESLTLEELNEVAAELCEHITLFG--VPQANKPSAVVACVPTAMKVPE 819
            L+QAFSLH+FAKRP+E I  L  FRR++ +R+ALAALQIRL+V  R D P F  VEFNQLDS REGCAVC LDMTAEPA+WKDA+  ++ E+R+LG++G+T GE+ R++S+L+TDA QLAAQG+RIS+ +Q L++LM+TVA+GHTFM   Q+YH T   + SLTLEE+N+ AAELC H+T F       + P+ VVAC+P  ++ P+
Sbjct:  160 LLQAFSLHLFAKRPVEEIIDLDSFRRSMARRVALAALQIRLNVGGRSDDPAFTFVEFNQLDSAREGCAVCSLDMTAEPARWKDAICKSLAEIRKLGLYGVTPGEMERYASSLMTDAEQLAAQGDRISHGDQ-LSYLMETVANGHTFMSPMQSYHMTAKALSSLTLEEVNKAAAELCAHVTGFHKEAEAVDGPTIVVACMPKGVEDPD 365          
BLAST of mRNA_Ecto-sp13_S_contig13379.2699.1 vs. uniprot
Match: A0A7S4HUK7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HUK7_9STRA)

HSP 1 Score: 237 bits (604), Expect = 4.280e-67
Identity = 135/270 (50.00%), Postives = 179/270 (66.30%), Query Frame = 1
Query:   25 QSLRFPPVTHQWSGGHCGRFSSDSIPLPAR-------LPTPDPLVED-NLVSAKKTSQALTPRPPP-TDPLVQAFSLHVFAKRPIEPINSLGDFRRAIMKRIALAALQIRLSVNSRKDPP-FLSVEFNQLDSPREGCAVCFLDMTAEPAKWKDAVKFAVREVRRLGMFGLTNGELTRFSSALLTDARQLAAQGNRISNSEQQLNFLMDTVASGHTFMDTEQTYHATRLVIESLTLEELNEVAAELCEHITLFGVPQANKPSAVVA--CVP 798
            QS  +PPV H W          DS+  P +       L  P PL ++ + +   + +Q    RP      L+QAFSLH+FAKRP+E I  L  FRR++ +RIALAALQIRL+V  R D P F  VEFNQLDS REGCAVC LD+TAEPA+WKDA+  ++ E+R+LG++G+T+GE+ R++ +L+TDA QLAAQG+ IS+ +Q L +LM+TVA+GHTFM  EQ+Y  T   + +LTLEE+N+ AAELC HIT     +A     VVA  CVP
Sbjct:  358 QSWHYPPVRHDWCVPAGAPVEVDSLIEPEQVIDYDIHLQEPYPLDDEVDFLKTDELAQGKKIRPHIFRHELLQAFSLHLFAKRPVEAITDLASFRRSLARRIALAALQIRLNVGGRSDDPAFTFVEFNQLDSAREGCAVCSLDLTAEPARWKDAICKSLSEIRKLGVYGVTHGEMERYAGSLMTDAEQLAAQGDMISHGDQ-LAYLMETVANGHTFMSPEQSYDMTANALSTLTLEEVNDAAAELCSHITSLSDGEAGPDGVVVATACVP 626          
BLAST of mRNA_Ecto-sp13_S_contig13379.2699.1 vs. uniprot
Match: A0A7S2EV96_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EV96_9STRA)

HSP 1 Score: 234 bits (596), Expect = 1.370e-66
Identity = 136/266 (51.13%), Postives = 176/266 (66.17%), Query Frame = 1
Query:   28 SLRFPPVTHQW--SGGHCGRFSSDSIPLP--ARLPTPDPLVED-NLVSAKKTSQALTPRPPP-TDPLVQAFSLHVFAKRPIEPINSLGDFRRAIMKRIALAALQIRLSVNSRKDPP-FLSVEFNQLDSPREGCAVCFLDMTAEPAKWKDAVKFAVREVRRLGMFGLTNGELTRFSSALLTDARQLAAQGNRISNSEQQLNFLMDTVASGHTFMDTEQTYHATRLVIESLTLEELNEVAAELCEHITLF--GVPQANKPSAVVACVP 798
            S  +PPV H W  S G  G       P+     L    PL E  + +S ++ +     RP      L+QAFSLH+FAKRP+EPI  L  FRR++ +R+ALAALQIRL+V  R D P F  VEFNQLDS REGCAV  LDMTAEP +WK+A+  ++ E+R+LG++G+T GE+ R++SAL+TDA QLAAQG+RIS+ +Q L +LM+TVA+GHTFM  EQ+Y+ T   + SLTLEE+NE A ELC H+T    G   A  P   VAC P
Sbjct:  115 SWHYPPVRHDWCVSPGKLGELEGMEKPIDYDIHLQESYPLDEKVDFLSTEEVAPGKKIRPHIFRHELLQAFSLHLFAKRPVEPITDLPSFRRSLARRVALAALQIRLNVGGRSDDPAFTFVEFNQLDSAREGCAVNSLDMTAEPHRWKEAICKSLSEIRKLGIYGVTPGEMERYASALMTDAEQLAAQGDRISHGDQ-LAYLMETVANGHTFMSPEQSYYMTAKALSSLTLEEVNEAAKELCSHVTGLKEGSDGAEGPLIAVACSP 379          
BLAST of mRNA_Ecto-sp13_S_contig13379.2699.1 vs. uniprot
Match: A0A7R9U8H0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8H0_9STRA)

HSP 1 Score: 233 bits (595), Expect = 5.690e-66
Identity = 126/277 (45.49%), Postives = 174/277 (62.82%), Query Frame = 1
Query:   25 QSLRFPPVTHQWSGGHCGRFSSDSIPLPARLPTPDPLVEDNLVSAKKTSQALTPRPPPT--------DPLVQAFSLHVFAKRPIEPINSLGDFRRAIMKRIALAALQIRLSVNSRKDPPFLSVEFNQLDSPREGCAVCFLDMTAEPAKWKDAVKFAVREVRRLGMFGLTNGELTRFSSALLTDARQLAAQGNRISNSEQQLNFLMDTVASGHTFMDTEQTYHATRLVIESLTLEELNEVAAELCEHITLFGVPQANK---------PSAVVACVPTA 804
            QS  FPPV H W+             +P  +  PD L+  N          LTP+P             L+Q FS H+FAKRP+EP+ ++  F+RAI+KR+A+AALQIRL+VN+R DPPF  VEFNQLDSPREG AVC LD+  E ++W++A+   V E+RR   FGL+ GEL R+  A++ D+ Q  AQG+RI+N++Q L  LM++VA GHTFMD EQ+Y AT  V+ S+TL+E+N +A E+CEH    G+ +A +         P+++ ACVP A
Sbjct:  322 QSKHFPPVVHDWTMSE----------IPPGIKLPDSLL--NSAKIMPDPSVLTPKPRNVADRTKMFYHELLQGFSFHLFAKRPVEPVTTMAAFKRAILKRVAIAALQIRLNVNARSDPPFTYVEFNQLDSPREGSAVCSLDLMGEVSRWQEAITMVVCEIRRFATFGLSQGELDRYLVAMIADSAQNRAQGDRINNADQ-LQLLMESVACGHTFMDAEQSYRATEAVVRSITLDEINAMAHEICEHF--LGLCEAGQEGTDSPAVLPASITACVPAA 583          
BLAST of mRNA_Ecto-sp13_S_contig13379.2699.1 vs. uniprot
Match: A0A1Z5KE45_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KE45_FISSO)

HSP 1 Score: 232 bits (592), Expect = 1.760e-65
Identity = 131/277 (47.29%), Postives = 180/277 (64.98%), Query Frame = 1
Query:   22 RQSLRFPPVTHQWSGGHCGRFSSDSI-PLPARLPTPDPLVEDNLVSAKKTSQALTPRPPPTD----PLVQAFSLHVFAKRPIEPINSLGDFRRAIMKRIALAALQIRLSVNSRKDPP-FLSVEFNQLDSPREGCAVCFLDMTAEPAKWKDAVKFAVREVRRLGMFGLTNGELTRFSSALLTDARQLAAQGNRISNSEQQLNFLMDTVASGHTFMDTEQTYHATRLVIESLTLEELNEVAAELCEHITLF--GVPQANKPSAVVACVPTAMKVPEIGP 828
            +QS  +PPV H WS     +     + PL   +   DP   D+ V   +T +    +          L+QAFSLH+FAKRP+EPI  L  F+R++ +R+ALAALQIRL+V  R D P F  VEFNQLDS REGCAVC LD+TAEP +W+DA+  +V E+R+LG++G+T GE+ R++S+L+TDA QLAAQG+RISN +Q L++LM+TVA+GHTFM   Q+Y  T   + ++T+E++N  AAELC HIT           P+ V+AC P    +PE  P
Sbjct:  355 QQSWHYPPVRHDWSILADHKVDDMPVKPLDYDIHLQDPYPLDDKVDLLETCEVAPGKEIRPHIFRHELLQAFSLHLFAKRPVEPIVDLKSFQRSLARRVALAALQIRLNVGGRSDDPAFTFVEFNQLDSAREGCAVCSLDLTAEPHRWRDAICKSVSEIRKLGLYGVTPGEMERYASSLMTDAEQLAAQGDRISNGDQ-LSYLMETVANGHTFMSPMQSYQMTARALSTMTVEQVNAAAAELCSHITSMHKDADPMKGPAIVIACTPKG--IPEDDP 628          
BLAST of mRNA_Ecto-sp13_S_contig13379.2699.1 vs. uniprot
Match: B5Y4R1_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y4R1_PHATC)

HSP 1 Score: 230 bits (587), Expect = 4.290e-65
Identity = 115/204 (56.37%), Postives = 155/204 (75.98%), Query Frame = 1
Query:  208 LVQAFSLHVFAKRPIEPINSLGDFRRAIMKRIALAALQIRLSVNSRKDPP-FLSVEFNQLDSPREGCAVCFLDMTAEPAKWKDAVKFAVREVRRLGMFGLTNGELTRFSSALLTDARQLAAQGNRISNSEQQLNFLMDTVASGHTFMDTEQTYHATRLVIESLTLEELNEVAAELCEHITLF--GVPQANKPSAVVACVPTAMK 810
            L+QAFSLH+FAKRP+E I  L  FRR++ +R+ALAALQIRL+V  R D P F  VEFNQLDS REGCAVC LD+T+EPA+WKDA+  +V E+R+LG++G+T GE+ R++S+L+TDA QLAAQG+RIS+ +Q L++LM+TVA+GHTFM   Q+YH T   + ++TLE++NE AAELC H++    G   +  P   +AC P   K
Sbjct:  275 LLQAFSLHLFAKRPVEEIVDLDGFRRSMARRVALAALQIRLNVGGRSDDPAFTFVEFNQLDSAREGCAVCSLDLTSEPARWKDAIGKSVSEIRKLGLYGVTPGEMERYASSLMTDAEQLAAQGDRISHGDQ-LSYLMETVANGHTFMSPMQSYHMTAKALSTMTLEDVNEAAAELCSHVSSIHDGAEASEGPIIAIACTPKGPK 477          
BLAST of mRNA_Ecto-sp13_S_contig13379.2699.1 vs. uniprot
Match: A0A7S4EKG3_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A7S4EKG3_9STRA)

HSP 1 Score: 229 bits (585), Expect = 1.620e-64
Identity = 131/273 (47.99%), Postives = 177/273 (64.84%), Query Frame = 1
Query:   25 QSLRFPPVTHQWSGGHCGRFSSDSIP---LPAR-------LPTPDPLVED-NLVSAKKTSQALTPRPPP-TDPLVQAFSLHVFAKRPIEPINSLGDFRRAIMKRIALAALQIRLSVNSRKDPP-FLSVEFNQLDSPREGCAVCFLDMTAEPAKWKDAVKFAVREVRRLGMFGLTNGELTRFSSALLTDARQLAAQGNRISNSEQQLNFLMDTVASGHTFMDTEQTYHATRLVIESLTLEELNEVAAELCEHITLF--GVPQANKPSAVVACVP 798
            QS  +PPV H W    C     D  P   +PA+       L    PL E  N + A++ +     RP      L+Q+FSLH F+KRP+EPI  +  FR+++ +R+ALAALQIRL+V  R D P F  VEFNQLDS REGCAVC LDMTAEP KWK+A+  ++ E+R+LG+ G+T GE+ R++S+L+TD  QLAAQG+RIS+ +Q L++LM+TVA+ HTFM  EQ+YH T   + SLT+E++N+ AAELC H+T    G      P   +AC P
Sbjct:  362 QSWHYPPVRHDW----CTPVDQDIDPKLIIPAKGLKYDLQLQESYPLDEKTNFLKAEEVAPGKGIRPHIFRHELLQSFSLHFFSKRPVEPIVDIDSFRKSLARRVALAALQIRLNVGGRSDDPAFTFVEFNQLDSAREGCAVCSLDMTAEPHKWKEAIHKSLSEIRKLGVHGVTMGEMERYASSLMTDGEQLAAQGDRISHGDQ-LSYLMETVANRHTFMSPEQSYHMTAKALSSLTIEDVNDAAAELCSHVTALKDGELPLRGPVIAIACTP 629          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13379.2699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCY0_9PHAE3.590e-15485.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C760_9STRA6.180e-10862.25Stromal processing peptidase n=1 Tax=Tribonema min... [more]
W7U2D5_9STRA1.850e-7853.70Peptidase M16 n=2 Tax=Monodopsidaceae TaxID=425072... [more]
A0A7S2VA48_9STRA1.640e-6858.45Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S4HUK7_9STRA4.280e-6750.00Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2EV96_9STRA1.370e-6651.13Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7R9U8H0_9STRA5.690e-6645.49Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A1Z5KE45_FISSO1.760e-6547.29Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
B5Y4R1_PHATC4.290e-6556.37Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
A0A7S4EKG3_9STRA1.620e-6447.99Hypothetical protein n=2 Tax=Pseudo-nitzschia TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13379contigEcto-sp13_S_contig13379:1084..4414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score233.8
Seed ortholog evalue1.1e-58
Seed eggNOG ortholog2850.Phatr10319
Model size926
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0007275,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0010154,GO:0022414,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458
Exons7
EggNOG free text desc.metalloendopeptidase activity
EggNOG OGs2XB2M@2836,COG1025@1,KOG0959@2759
Cds size924
COG Functional cat.O
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13379.2699.1prot_Ecto-sp13_S_contig13379.2699.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13379 1084..4412 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462714.583637-CDS-Ecto-sp13_S_contig13379:1083..11551681462714.583637-CDS-Ecto-sp13_S_contig13379:1083..1155Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13379 1084..1155 +
1681462714.5980332-CDS-Ecto-sp13_S_contig13379:1480..15051681462714.5980332-CDS-Ecto-sp13_S_contig13379:1480..1505Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13379 1481..1505 +
1681462714.6138775-CDS-Ecto-sp13_S_contig13379:1760..20621681462714.6138775-CDS-Ecto-sp13_S_contig13379:1760..2062Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13379 1761..2062 +
1681462714.6270835-CDS-Ecto-sp13_S_contig13379:2624..28221681462714.6270835-CDS-Ecto-sp13_S_contig13379:2624..2822Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13379 2625..2822 +
1681462714.6429946-CDS-Ecto-sp13_S_contig13379:3182..32871681462714.6429946-CDS-Ecto-sp13_S_contig13379:3182..3287Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13379 3183..3287 +
1681462714.6541593-CDS-Ecto-sp13_S_contig13379:3551..36591681462714.6541593-CDS-Ecto-sp13_S_contig13379:3551..3659Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13379 3552..3659 +
1681462714.6627824-CDS-Ecto-sp13_S_contig13379:4298..44121681462714.6627824-CDS-Ecto-sp13_S_contig13379:4298..4412Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13379 4299..4412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13379.2699.1

>prot_Ecto-sp13_S_contig13379.2699.1 ID=prot_Ecto-sp13_S_contig13379.2699.1|Name=mRNA_Ecto-sp13_S_contig13379.2699.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=308bp
QEPPNLKRQSLRFPPVTHQWSGGHCGRFSSDSIPLPARLPTPDPLVEDNL
VSAKKTSQALTPRPPPTDPLVQAFSLHVFAKRPIEPINSLGDFRRAIMKR
IALAALQIRLSVNSRKDPPFLSVEFNQLDSPREGCAVCFLDMTAEPAKWK
DAVKFAVREVRRLGMFGLTNGELTRFSSALLTDARQLAAQGNRISNSEQQ
LNFLMDTVASGHTFMDTEQTYHATRLVIESLTLEELNEVAAELCEHITLF
GVPQANKPSAVVACVPTAMKVPEIGPNGEESTEAMELSEEDVVAAFVEGV
NEEVCMCS
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mRNA from alignment at Ecto-sp13_S_contig13379:1084..4414+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13379.2699.1 ID=mRNA_Ecto-sp13_S_contig13379.2699.1|Name=mRNA_Ecto-sp13_S_contig13379.2699.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3331bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13379:1084..4414+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAACCCCCCAACCTGAAAAGGCAGTCCCTCAGGTTCCCGCCGGTGAC CCACCAGTGGTCCGGGGGGCACGTGACCGAGAGGAACACGCTGCCGGTCA TGGAGCCCGTAGACGGGAAGCCGCTCGGAGTCCCTCGCTTCTACAAGCAT GACCTCCTCCAGGTAGGTTCGAAGGTGTCCTGGAGAAGGGTCGACAGGTT GAAGCGCTTGTCCCGTTGGTTTTGATTAGGCCGGGTTCTTGACGATTGTT AGAAGAGAAACACCACCACGAAACGTTTTCGAGCTCTCATCGGTGGATAA TAGGATGCTTTCTGGGGTTTCTAGCAGAGCTCCAATTTTGATTTCACTGA AATGGGAAATAAGTTTTTCGACACGGGATAATCGGGGCGCTTTGGAGTGT GGCAGATTCTCCTCGGACTCAAGTAATGAGTAGTCCACGGGTAGAAGCGG AGCACAATTCAGTGAGATGTCACCAGACACGCAAGAATCTCGCTCTTCCA TGCCAAAATGTTCCTCCGCCAAAGCGTTGCGGGCTGCTAACTCCTGTGTT CATTCGAACTTTTAAAGACAATGTCTGCCCGAAGACCTTCCTGTTTCAAC AAGCGTGTGCAACAACAGTCAAGTCTGTACGCAAACCATAACAAAACTTA CGTGTGTATACGTCCCCCTCCCATAAGTCCCCCTCCCCGCCCGGCTCCCG ACCCCCGATCCGCTTGTTGAAGATAATCTCGTTTCAGCCAAAAAAACTTC CCAAGCGCTCACCCCCCGCCCCCCCCCAACCGATCCTCTGGTTCAGGCCT TCTCTCTCCACGTGTTCGCCAAGCGGCCTATCGAGCCCATCAACTCCCTC GGCGACTTCCGGCGGGCAATCATGAAGAGGATCGCTCTGGCAGCCCTGCA GATCAGGCTATCGGTCAACTCTAGGAAGGACCCGCCATTCCTCAGCGTCG AGTTCAACCAGCTTGATTCTCCCAGAGAGGTGAGGTGGGCGGTGACAGTT CTGGTGTTTTCTTTTGGTGTTGCTCATTATGTCTTGATATTTGATTGCAC AAATGTGTAGCCCCCTCGACTTACGCTTTTGGACCTCCCTCAAGAACGAG TCATGCTCGTTTGTTTGTTTTTCTGCAGTAGCAGTAGGCAAGAGGCAAAA AGTGCCGCAGAAAGAGCACGTACCCGTCTGAGACTCTTCTCTAGGTCTTG GTCTTTTGTTGCTTCTCTCCTTTCATCTCATCTCTGAAACACCAACGGGG CCTCTTATTGCCTTTGTGGTGTATTTTTTCTGATGGCACGCCTCCTTATC TCCCGTCTTGACAGGGTTGCGCGTTCTGCTTCCTGGACATGACGCATACC CCCCCAAATGCTATTTTTTCCCCTCAAAACATGCCTCATTTTCTCCCGTC TCGGCAGGGGTGCGCGGTCTGCTTGCTGGACATGGCATATATCCCCCTTA CCTGCTGTTATGTGCACGAAGTATATAGGGGTATAATTTGTTTCTTCTCG AGACACGCCTTCTTTTTTCTCCTTGTCTTGTGTCTGGGCAGGGTTGCGCC GTCTGCTTCCTGGACATGACGGCGGAGCCAGCGAAGTGGAAGGACGCCGT CAAGTTCGCCGTGCGGGAGGTGCGGAGGCTGGGCATGTTCGGCCTCACGA ACGGCGAGCTAACGCGGTTCTCGTCCGCGTTGCTCACGGACGCACGGCAG CTGGCGGCACAGGGGAACCGCATCAGCAACAGTGAGCAAGTAGCACCAGT AGCCAATGAGGCGGCTTGGTTGTTTGGCTTCGCGCTAACATGTTTCGTCA GATTATCGCTATTCAAGGTAGTGTTGTGTGTTGATTGTGTGCTCTGATGA GGTGCTCCGCGACACCGACCCGTGAGTGTATTTTCTCCACGGTCCTGTGT CCAAGACGTACCGGGAACTTGCCTCTCCCCGATTGGTTGTACCCCTCCCC CTATTATGGAGTAGTAGTTGGCAAGCCTTTCCCCCGTCGTGATGTCCTTC GTTTGCGATGATGACTTCCTCCCCGCACCGCCTCACACCGACGTGTTGGT GGTGTCGCTGTTTTTTTTTCAATCTCCGTCTCTCCCTCCCTCAGGCGAGC AGCTGAACTTCTTGATGGACACGGTGGCCTCGGGTCACACCTTCATGGAC ACCGAGCAGACGTACCACGCCACCCGCCTTGTCATCGAGTCGCTCACCCT CGAGGTGCGTGCCGCTTACTAGCGTTACAACTCCGCAGTAGTTTCATGTG TTGGCGGGGTGAACTTGAAACCACAAACTACAGCTTTATTTTTTTCAATT TGCGTGGTTTGCAACTTTCGGGTCGAGTTTGGTGTTGATGATTCCCACCC CCAAACCATACTGCGGAGTACAGAGGAAACTAGCTGAGATCACACACACA AGTGTCTTCAGAGTTTGTCGTTGTTGAATGATTGTTGCTGTTGTTGTTGC TGTGTGTGTGGCAAGCAGGAGCTGAACGAGGTGGCGGCCGAGCTGTGCGA GCACATCACCCTCTTCGGAGTGCCCCAGGCCAATAAGCCCAGCGCCGTGG TTGCTTGCGTGCCCACGGCGATGAAGGTGAGGCAAGAACGCAATGAACAC GCACGTACGCACACACTACAACAGCAGTTGTGGCATCGCGAGCGTTTGTT CATGCGGCACACTACACGAGATGTTATGTATATTTATTTTTCTTCATCAA CATTTTATACAGCAGTTGCTAATTGCGGATACGGGCGTCGTCCGCTGGTA ATGTGGGTCTTGCGTAGGGGGGCGGCAAAGTTGTTTGCTGGTTAACTGCT GGTGCTGCTGCTGTTGCTATGGTTGTGGTGGCGGTGTACTGGTTTTTCTT TTCGTGGAACCAACACACACGTATTGCGAGCACGACGGATTTTGTTTTGG TGCTCATCGAAGTTTTTGCCTTTAACGGTTGCTGGGCAGGGCACCCGAAG TATTTTAAGAGCACAGCAATTGATTCCGTGGAGTTGTTGGATTCGGAATT GAAACGAACTTGGCCTTCCCCGTTTTGCAGTATTGATCCCTTTACAAGGC CGCCTTAGAAAGGACGGTCGACCCATAAAGTGACCGGTCCGGTGAATGAT CGCATGACACAGATTGAATGTTCAAGGTGCCTCATGCACACCAAGAGCTG CTGCTTGCACTGGTGGCCGCAGTGGCATTGACGTGTATGCTGCTGTACCT ACTCGTTTCCACCAGGTGCCCGAGATTGGACCGAATGGCGAGGAGTCGAC GGAGGCCATGGAGCTCTCGGAGGAGGACGTAGTGGCCGCCTTTGTCGAGG GGGTAAACGAAGAGGTATGTATGTGCAGCTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13379:1084..4414+

>mRNA_Ecto-sp13_S_contig13379.2699.1 ID=mRNA_Ecto-sp13_S_contig13379.2699.1|Name=mRNA_Ecto-sp13_S_contig13379.2699.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=924bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13379:1084..4414+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAACCCCCCAACCTGAAAAGGCAGTCCCTCAGGTTCCCGCCGGTGAC
CCACCAGTGGTCCGGGGGGCACTGTGGCAGATTCTCCTCGGACTCAATCC
CCCTCCCCGCCCGGCTCCCGACCCCCGATCCGCTTGTTGAAGATAATCTC
GTTTCAGCCAAAAAAACTTCCCAAGCGCTCACCCCCCGCCCCCCCCCAAC
CGATCCTCTGGTTCAGGCCTTCTCTCTCCACGTGTTCGCCAAGCGGCCTA
TCGAGCCCATCAACTCCCTCGGCGACTTCCGGCGGGCAATCATGAAGAGG
ATCGCTCTGGCAGCCCTGCAGATCAGGCTATCGGTCAACTCTAGGAAGGA
CCCGCCATTCCTCAGCGTCGAGTTCAACCAGCTTGATTCTCCCAGAGAGG
GTTGCGCCGTCTGCTTCCTGGACATGACGGCGGAGCCAGCGAAGTGGAAG
GACGCCGTCAAGTTCGCCGTGCGGGAGGTGCGGAGGCTGGGCATGTTCGG
CCTCACGAACGGCGAGCTAACGCGGTTCTCGTCCGCGTTGCTCACGGACG
CACGGCAGCTGGCGGCACAGGGGAACCGCATCAGCAACAGTGAGCAACAG
CTGAACTTCTTGATGGACACGGTGGCCTCGGGTCACACCTTCATGGACAC
CGAGCAGACGTACCACGCCACCCGCCTTGTCATCGAGTCGCTCACCCTCG
AGGAGCTGAACGAGGTGGCGGCCGAGCTGTGCGAGCACATCACCCTCTTC
GGAGTGCCCCAGGCCAATAAGCCCAGCGCCGTGGTTGCTTGCGTGCCCAC
GGCGATGAAGGTGCCCGAGATTGGACCGAATGGCGAGGAGTCGACGGAGG
CCATGGAGCTCTCGGAGGAGGACGTAGTGGCCGCCTTTGTCGAGGGGGTA
AACGAAGAGGTATGTATGTGCAGC
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