mRNA_Ecto-sp13_S_contig13378.2698.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13378.2698.1
Unique NamemRNA_Ecto-sp13_S_contig13378.2698.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13378.2698.1 vs. uniprot
Match: A0A6H5KMP7_9PHAE (Ricin B-type lectin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMP7_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 5.350e-48
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 1
Query:    1 FVVQLAQTIADGGEEPTGDDAHRDDVTALMVAAQGGHEAVVKLLVEKGADVKAKDEEGFTPLLNAGNFEEVASFLVESGADPNDVYTDD 267
            F+ QLAQTIADGGEEPTGDDAHRDDVTALMVAAQGGHEAVVKLLVEKGADV+AKDEEGFTPLLNAGNFEEVASFLVESGADPNDVYTDD
Sbjct:  537 FLEQLAQTIADGGEEPTGDDAHRDDVTALMVAAQGGHEAVVKLLVEKGADVRAKDEEGFTPLLNAGNFEEVASFLVESGADPNDVYTDD 625          
BLAST of mRNA_Ecto-sp13_S_contig13378.2698.1 vs. uniprot
Match: A0A7R9U5G3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5G3_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.080e-21
Identity = 52/91 (57.14%), Postives = 67/91 (73.63%), Query Frame = 1
Query:    1 FVVQLAQTIADGGEEPTGDDAHRDDVTALMVAAQGGHEAVVKLLVEKGADVKAKDEEGFTPLLNA--GNFEEVASFLVESGADPNDVYTDD 267
            ++ Q+A+ IADG E+    + H+D VTALMVAA GGH  VVK+L+E  ADV A DEE +TPLLNA  GN  ++A+ LVE GA+PNDV+ DD
Sbjct:  529 YIDQIAKAIADGSEDV---EPHKDGVTALMVAALGGHTEVVKMLLEAEADVTAADEENWTPLLNAVKGNHADLAALLVEHGANPNDVFVDD 616          
BLAST of mRNA_Ecto-sp13_S_contig13378.2698.1 vs. uniprot
Match: A0A7S1FMT5_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMT5_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 5.650e-19
Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = 1
Query:    1 FVVQLAQTIADGGEEPTGDDAHRDDVTALMVAAQGGHEAVVKLLVEKGADVKAKDEEGFTPLLNA--GNFEEVASFLVESGADPNDVYTDD 267
            ++  +A+ IADG EE    + H D VTA+ VAA GGH   VK L+E GADVKAKD+E   PL+NA  GN+ ++AS LVE+GADPN+ Y D+
Sbjct:  571 YIDGVAKAIADGKEEV---EPHVDGVTAIHVAAMGGHLKCVKSLIEAGADVKAKDDEDKGPLMNAVKGNYGDIASLLVENGADPNETYVDE 658          
BLAST of mRNA_Ecto-sp13_S_contig13378.2698.1 vs. uniprot
Match: A0A8J9T9S8_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9T9S8_PHATR)

HSP 1 Score: 78.6 bits (192), Expect = 4.940e-17
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    1 FVVQLAQTIADGGEEPTGDDAHRDDVTALMVAAQGGHEAVVKLLVEKGADVKAKDEEGFTPLLNA--GNFEEVASFLVESGADPNDVYTDD 267
            ++V+L + I +G  +   D+ H D VTAL VAAQGGH A V+ LVE GA++  +DEE  T LL A  GN  EVAS LV  GADPN  Y DD
Sbjct:   17 YLVKLKKMIEEGTAQE--DEPHVDGVTALHVAAQGGHLATVEALVEAGANIGIQDEENRTSLLMAIKGNHGEVASALVRGGADPNTPYVDD 105          
BLAST of mRNA_Ecto-sp13_S_contig13378.2698.1 vs. uniprot
Match: A0A6U3Q8H2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Q8H2_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.200e-14
Identity = 48/91 (52.75%), Postives = 60/91 (65.93%), Query Frame = 1
Query:    1 FVVQLAQTIADGGEEPTGDDAHRDDVTALMVAAQGGHEAVVKLLVEKGADVKAKDEEGFTPLLNA--GNFEEVASFLVESGADPNDVYTDD 267
            ++ +LA+ I +G  E T  D H D VTA+ VAAQGGH   VK LV  GADV   D+E  +PLL +  GNF EVA+ LV +GADPN VY D+
Sbjct:  574 YLEKLAKMIEEGTVEET--DPHVDGVTAVHVAAQGGHLECVKHLVAAGADVTILDDEERSPLLLSVKGNFGEVATELVRAGADPNTVYVDE 662          
BLAST of mRNA_Ecto-sp13_S_contig13378.2698.1 vs. uniprot
Match: A0A1Z5JTF5_FISSO (Ankyrin n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JTF5_FISSO)

HSP 1 Score: 77.0 bits (188), Expect = 1.640e-14
Identity = 48/92 (52.17%), Postives = 63/92 (68.48%), Query Frame = 1
Query:    1 FVVQLAQTIADGGEEPTGDDAHRDDVTALMVAAQGGHEAVVKLLVEKGAD-VKAKDEEGFTPLLNA--GNFEEVASFLVESGADPNDVYTDD 267
            ++V+L+Q IA+G  + T +D H D VTAL VAAQGGH A V LL+E   + V  KD++  TPLL A  GN  EVA+ LV++GADPN  + DD
Sbjct:  548 YLVKLSQMIAEG--KMTNEDPHVDGVTALHVAAQGGHLATVDLLLEHSPEMVLVKDDQARTPLLLAIKGNHGEVATALVKAGADPNTPFVDD 637          
BLAST of mRNA_Ecto-sp13_S_contig13378.2698.1 vs. uniprot
Match: A0A7S3QCF7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QCF7_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 5.060e-13
Identity = 45/91 (49.45%), Postives = 56/91 (61.54%), Query Frame = 1
Query:    1 FVVQLAQTIADGGEEPTGDDAHRDDVTALMVAAQGGHEAVVKLLVEKGADVKAKDEEGFTPLLNA--GNFEEVASFLVESGADPNDVYTDD 267
            ++ +L Q I  G  E   +D H D VTA+ VAAQGGH   V +L+E  ADV   D+E  TPLL A  GN+ +VA  LV+ GADPN  Y DD
Sbjct:  568 YLEKLVQMIEAGTVED--EDPHVDGVTAVHVAAQGGHLETVTILIEAKADVTILDDEDRTPLLLAVKGNYGDVAMALVKGGADPNTPYVDD 656          
BLAST of mRNA_Ecto-sp13_S_contig13378.2698.1 vs. uniprot
Match: A0A7S2UKR6_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UKR6_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.270e-12
Identity = 47/94 (50.00%), Postives = 59/94 (62.77%), Query Frame = 1
Query:    1 FVVQLAQTIADG---GEEPTGDDAHRDDVTALMVAAQGGHEAVVKLLVEKGADVKAKDEEGFTPLLNA--GNFEEVASFLVESGADPNDVYTDD 267
            ++ +LA+  A+G    EEP     H D VTA+ VAAQGGH A V++LV  GAD    D+E  + LL A  GN+ EVAS LV+ GADPN  Y DD
Sbjct:  308 YLEKLAKMQAEGTAVDEEP-----HVDGVTAVHVAAQGGHLAAVEVLVAAGADATVLDQEKRSALLLAVKGNYGEVASALVKGGADPNTPYVDD 396          
BLAST of mRNA_Ecto-sp13_S_contig13378.2698.1 vs. uniprot
Match: A0A7S1GGD5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GGD5_CYCTE)

HSP 1 Score: 70.9 bits (172), Expect = 2.300e-12
Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 1
Query:    1 FVVQLAQTIADGGEEPTGDDAHRDDVTALMVAAQGGHEAVVKLLVEKGADVKAKDEEGFTPLLNA--GNFEEVASFLVESGADPNDVYTDD 267
            ++ +L + I +G  + T DD H D VTAL VAAQGGH   V +L+E  A V+ KD+EG T LL A  GN  EVA  LV++GA+PN  Y D+
Sbjct:  142 YLEKLKKMIEEGTVDNT-DDPHVDGVTALHVAAQGGHLDCVNVLLEAKAKVEVKDDEGRTALLLAIKGNHGEVAVELVKAGANPNTPYVDE 231          
BLAST of mRNA_Ecto-sp13_S_contig13378.2698.1 vs. uniprot
Match: A0A482RYB2_9ARCH (Ankyrin repeat domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RYB2_9ARCH)

HSP 1 Score: 70.5 bits (171), Expect = 2.540e-12
Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 1
Query:    1 FVVQLAQTIADGGEEPTGDDAHRDDVTALMVAAQGGHEAVVKLLVEKGADVKAKDEEGFTPLLNA--GNFEEVASFLVESGADPNDVYTDD 267
            ++ Q+A+ +A+G E+    + H+D VTAL +AAQGGH  +V  LV+  A V   DEE  TPLL +       V+ +L+E GA+PNDVY DD
Sbjct:   54 YIEQVAKGVAEGKEDV---EPHKDGVTALSLAAQGGHLDLVHALVDAQAAVDVADEEDETPLLASFKNKHYNVSYYLLEHGANPNDVYVDD 141          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13378.2698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMP7_9PHAE5.350e-4896.63Ricin B-type lectin domain-containing protein n=2 ... [more]
A0A7R9U5G3_9STRA2.080e-2157.14Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1FMT5_9STRA5.650e-1953.85Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A8J9T9S8_PHATR4.940e-1752.75Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A6U3Q8H2_9STRA1.200e-1452.75Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A1Z5JTF5_FISSO1.640e-1452.17Ankyrin n=2 Tax=Fistulifera solaris TaxID=1519565 ... [more]
A0A7S3QCF7_9STRA5.060e-1349.45Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2UKR6_9STRA1.270e-1250.00Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1GGD5_CYCTE2.300e-1249.45Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A482RYB2_9ARCH2.540e-1245.05Ankyrin repeat domain-containing protein (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13378contigEcto-sp13_S_contig13378:99..847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score132.1
Seed ortholog evalue1.3e-28
Seed eggNOG ortholog2880.D7FMW2
Model size267
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size267
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462714.5380957-CDS-Ecto-sp13_S_contig13378:98..2931681462714.5380957-CDS-Ecto-sp13_S_contig13378:98..293Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13378 99..293 +
1681462714.5523698-CDS-Ecto-sp13_S_contig13378:775..8471681462714.5523698-CDS-Ecto-sp13_S_contig13378:775..847Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13378 776..847 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13378.2698.1prot_Ecto-sp13_S_contig13378.2698.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13378 99..847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13378.2698.1

>prot_Ecto-sp13_S_contig13378.2698.1 ID=prot_Ecto-sp13_S_contig13378.2698.1|Name=mRNA_Ecto-sp13_S_contig13378.2698.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
FVVQLAQTIADGGEEPTGDDAHRDDVTALMVAAQGGHEAVVKLLVEKGAD
VKAKDEEGFTPLLNAGNFEEVASFLVESGADPNDVYTDD
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mRNA from alignment at Ecto-sp13_S_contig13378:99..847+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13378.2698.1 ID=mRNA_Ecto-sp13_S_contig13378.2698.1|Name=mRNA_Ecto-sp13_S_contig13378.2698.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=749bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13378:99..847+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCGTCGTTCAGCTCGCCCAGACGATCGCGGACGGTGGCGAGGAACCCAC GGGAGACGACGCCCACAGGGACGATGTGACCGCCCTGATGGTGGCGGCAC AGGGGGGACACGAGGCGGTGGTGAAGCTGCTGGTGGAGAAGGGGGCCGAC GTGAAGGCCAAGGACGAGGAGGGGTTCACTCCGCTCCTCAACGCCGTCAA GGCGAGTTCGTGAACGGGGTGTTGGGCCCTCTTGTGGAGTTTTGCTTGGT GTTTGTGTTTTTGTTGTTGGTATTGTTGCCAGTTGGTGGTGTTGGTGCTG GTGGTGGTGCTCCTATTGTTGCTGTTGCGGAGTTGTTGTTGTTGTTGTGG TGGTCTTTGTGTTTTTGGTTGTTTGTCGTTGCTCGTATGGTTTTGGTGTT GTGGTAGGGGTCCTTGGCTGCATGTGACGTCTCCGGCAGCCACTCTCTCA TGCATGGACGTTTAACCTGACCAACCTCATCATAATCACGCACATATATC TGCATCAAACCCCAAGGGAATCCGGGAGCACATGCAAGCGACGCTTGACG CAGCGGTGATGGCGAACCAGACGAAACATGGGGGTGCAGAGAACCATTGG CGTTACGCAATCTACTAGTTCGAAAACGTTGACTAAATCACGAAGTTCTT ACGTGTTGAATGATTTCATGATTGCAGGGCAATTTCGAGGAGGTGGCGTC TTTCCTGGTGGAGAGCGGGGCCGACCCTAACGATGTTTACACGGACGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13378:99..847+

>mRNA_Ecto-sp13_S_contig13378.2698.1 ID=mRNA_Ecto-sp13_S_contig13378.2698.1|Name=mRNA_Ecto-sp13_S_contig13378.2698.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13378:99..847+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCGTCGTTCAGCTCGCCCAGACGATCGCGGACGGTGGCGAGGAACCCAC
GGGAGACGACGCCCACAGGGACGATGTGACCGCCCTGATGGTGGCGGCAC
AGGGGGGACACGAGGCGGTGGTGAAGCTGCTGGTGGAGAAGGGGGCCGAC
GTGAAGGCCAAGGACGAGGAGGGGTTCACTCCGCTCCTCAACGCCGGCAA
TTTCGAGGAGGTGGCGTCTTTCCTGGTGGAGAGCGGGGCCGACCCTAACG
ATGTTTACACGGACGAC
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