mRNA_Ecto-sp13_S_contig13377.2696.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13377.2696.1
Unique NamemRNA_Ecto-sp13_S_contig13377.2696.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13377.2696.1 vs. uniprot
Match: D8LF16_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF16_ECTSI)

HSP 1 Score: 423 bits (1087), Expect = 2.400e-133
Identity = 231/251 (92.03%), Postives = 233/251 (92.83%), Query Frame = 1 
Query:    1 RESRIPAHLATVTELPVSAMDDPNPFVPPSQYEVRLNVSRGLGLSLNITGNDVRVKGFSPVQGGDIGPAQACGDIQVGDALVRVNHEQLNLLNHENVVRVLRGLLRTTGSQVLLLRFAYAEDSPRLLWATTSPXXXXX--LPPKTPVPRPSTIENPRSEPRVSQGGLDTEEAFRSESWHGSSKPPGAREGQGQGREMARSVSPHRRTGPNLLRSQSLGEGGPQAVAGLTRKGSGAEAGDKEGEREGWTVDG 747
            RESRIP HL TVTELPVSAMDDPNPFVPPSQYEVRLNVSRGLGLSLNITGNDVRVKGFS VQGGDIGPAQACGDIQVGDALVRVNHEQLNLLNHENVVRVLRGLLRTTGSQVLLLRFAYAEDSPRLL ATT  XXXXX  LPPKT VPRPST+ENPRSEPRVS GGLDTEEAFRSESWHGSSKPP AREGQGQGREMARSVSPHRRTGP +LRSQSLGEGGP  VAG  RKGSGAEAG KEGE EGWTVDG
Sbjct:   22 RESRIPTHLVTVTELPVSAMDDPNPFVPPSQYEVRLNVSRGLGLSLNITGNDVRVKGFSTVQGGDIGPAQACGDIQVGDALVRVNHEQLNLLNHENVVRVLRGLLRTTGSQVLLLRFAYAEDSPRLLRATTXXXXXXXXXLPPKTRVPRPSTMENPRSEPRVSHGGLDTEEAFRSESWHGSSKPPRAREGQGQGREMARSVSPHRRTGPAVLRSQSLGEGGPPTVAGFARKGSGAEAGHKEGEWEGWTVDG 272
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BLAST of mRNA_Ecto-sp13_S_contig13377.2696.1 vs. uniprot
Match: A0A6H5JMH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH3_9PHAE)

HSP 1 Score: 333 bits (855), Expect = 3.790e-112
Identity = 192/249 (77.11%), Postives = 195/249 (78.31%), Query Frame = 1 
Query:    1 RESRIPAHLATVTELPVSAMDDPNPFVPPSQYEVRLNVSRGLGLSLNITGNDVRVKGFSPVQGGDIGPAQACGDIQVGDALVRVNHEQLNLLNHENVVRVLRGLLRTTGSQVLLLRFAYAEDSPRLLWATTSPXXXXXLPPKTPVPRPSTIENPRSEPRVSQGGLDTEEAFRSESWHGSSKPPGAREGQGQGREMARSVSPHRRTGPNLLRSQSLGEGGPQAVAGLTRKGSGAEAGDKEGEREGWTVDG 747
            RESRIPAHLATVTELPVSAMDDPNPFVPPSQYEV                                           GDALVRVNHEQLNLLNHENVVRVLRGLLRTTGSQVLLLRFAYAEDSPRLL ATTSPXXXXXLPPKTP PRPST+ENP+SEPRVSQ  LDTEEAFRSESWHGS KPP AR+GQGQGREMARSVSPHRRTGP LLRSQSLGEGGP AVAGL  KGSGAEAGDKEGEREGW VDG
Sbjct:   22 RESRIPAHLATVTELPVSAMDDPNPFVPPSQYEV-------------------------------------------GDALVRVNHEQLNLLNHENVVRVLRGLLRTTGSQVLLLRFAYAEDSPRLLRATTSPXXXXXLPPKTPGPRPSTMENPQSEPRVSQSDLDTEEAFRSESWHGSRKPPRARKGQGQGREMARSVSPHRRTGPALLRSQSLGEGGPPAVAGLAHKGSGAEAGDKEGEREGWAVDG 227
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BLAST of mRNA_Ecto-sp13_S_contig13377.2696.1 vs. uniprot
Match: A0A835Z5M4_9STRA (PDZ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5M4_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.020e-22
Identity = 64/142 (45.07%), Postives = 83/142 (58.45%), Query Frame = 1 
Query:   28 ATVTELPVSAMDDPNPFVPPSQYEVRLNVSRGLGLSLNITGNDVRVKGFSPVQGGDIGPAQACGDIQVGDALVRVNHEQLNLLNHENVVRVLRGLLRTTGSQVLLLRFAYAEDSPRLLWATTSPXXXXXL----PPKTPVPR 441
            A++  LP S++DDP+PFVPPSQY  RL+ S+GLG++L ITG  VRV GF+P   G +  AQ  G I VGD L+ VN   L L+   +++ VLR L R     V L RFAY ++   LL A   P          PP+ P PR
Sbjct:   91 ASIGSLPASSVDDPSPFVPPSQYIARLDASKGLGINLQITGVKVRVGGFAPAANGAMSAAQLSGIISVGDVLLGVNGRDLTLMRFNDILGVLRALPRIKEGTVTL-RFAYGQEEQLLLEAEQEPGHLRAARSQSPPQLPPPR 231
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BLAST of mRNA_Ecto-sp13_S_contig13377.2696.1 vs. uniprot
Match: A0A4D9D6T8_9STRA (PDZ domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6T8_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 6.330e-7
Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:   91 QYEVRLNVSRGLGLSLNITGNDVRVKGFSPVQGGDIGPAQACGDIQVGDALVRVNHEQLNLLNHENVVRVLRGLLRTTGSQVLLLRFAYAEDS 369
            +YEV+L  S GLGL L   GN V V+G + +  G   PAQ CG I+ GDAL+ VN   L  L  ++ + VL  L R   +++LL RF   E S
Sbjct:  675 EYEVQLVASGGLGLDLAFVGNGVVVRGLAFLADGRPSPAQLCGRIRAGDALLAVNGIALEPLALKDKLGVLLALAREEDTEILL-RFMAKEAS 766
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13377.2696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LF16_ECTSI2.400e-13392.03PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JMH3_9PHAE3.790e-11277.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z5M4_9STRA1.020e-2245.07PDZ domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A4D9D6T8_9STRA6.330e-743.01PDZ domain-containing protein n=2 Tax=Monodopsidac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13377contigEcto-sp13_S_contig13377:1114..2922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size747
Hectar predicted targeting categoryother localisation
Exons3
Cds size747
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462714.476356-CDS-Ecto-sp13_S_contig13377:1113..12121681462714.476356-CDS-Ecto-sp13_S_contig13377:1113..1212Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13377 1114..1212 +
1681462714.4873447-CDS-Ecto-sp13_S_contig13377:1707..18361681462714.4873447-CDS-Ecto-sp13_S_contig13377:1707..1836Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13377 1708..1836 +
1681462714.4998522-CDS-Ecto-sp13_S_contig13377:2403..29221681462714.4998522-CDS-Ecto-sp13_S_contig13377:2403..2922Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13377 2404..2922 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13377.2696.1prot_Ecto-sp13_S_contig13377.2696.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13377 1114..2922 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13377.2696.1

>prot_Ecto-sp13_S_contig13377.2696.1 ID=prot_Ecto-sp13_S_contig13377.2696.1|Name=mRNA_Ecto-sp13_S_contig13377.2696.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=249bp
RESRIPAHLATVTELPVSAMDDPNPFVPPSQYEVRLNVSRGLGLSLNITG
NDVRVKGFSPVQGGDIGPAQACGDIQVGDALVRVNHEQLNLLNHENVVRV
LRGLLRTTGSQVLLLRFAYAEDSPRLLWATTSPPPPPPLPPKTPVPRPST
IENPRSEPRVSQGGLDTEEAFRSESWHGSSKPPGAREGQGQGREMARSVS
PHRRTGPNLLRSQSLGEGGPQAVAGLTRKGSGAEAGDKEGEREGWTVDG
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mRNA from alignment at Ecto-sp13_S_contig13377:1114..2922+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13377.2696.1 ID=mRNA_Ecto-sp13_S_contig13377.2696.1|Name=mRNA_Ecto-sp13_S_contig13377.2696.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1809bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13377:1114..2922+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGAGTCTCGAATACCGGCGCACTTGGCGACGGTTACGGAGCTGCCTGT
CTCGGCCATGGATGACCCTAACCCCTTCGTACCCCCCAGCCAGTACGAGG
TGCGACCCCCCCCCTCCCCCCCGTGAATTACCGATGTAATACTTCTCCCT
CGGTTGATATTATTTTATTGCTGTTGGCGTCATGGCCTACTGTAGCCTCA
TGACCTGTCTCTCCCTCTGTTTTTGATGTTTCTGTCGTTGTTATTGTTGT
TTGGTACAATGGTGCTTGTCGTGGTGTTACAATAGTGCTTGTTGTGATGG
TACAATAGTGCTTGTTGTGGTGGTACAATGGTGCCTGTTGTGGTGTTGTT
GGTATCGTTGTGGGTCACTGTTTTGCTTCATGACCCTAAAGCGTTTCTGT
CTCGAGATTACTACCACCGCCGCAGACGTTCACCATGTACCCAACCGGGG
GTATGAGCTGGCGTCGAAAACACACCGGTATTTCTGCCACCCATGTCTTG
GCTTAGCAGCTCTCTTTTTGTACATACACACAGCTGCATGTAGGTGTGGC
TTGCTCCTACAACTGCTTCACTACTCGTCTCCGTTGTGGTGTAGGTCCGC
CTGAACGTGTCGAGGGGTCTCGGTCTGTCTCTCAACATCACGGGAAACGA
CGTTCGTGTCAAGGGCTTCTCGCCCGTACAGGGCGGCGACATCGGACCTG
CCCAGGCATGCGGCGACATCCAGGCAAGGCAAACACGCTCCTTTTTCTCC
TTGATGCTTTGTACAAGGGCAGGAAATGTTGGTATTCCAGTAAGCAAGAG
TGTCCCTAGGCATGCGGCGACATGCAGGCAAGGCTACACTCTTGAGCCTT
TGCAAGGGAAGCGGTATCGATACAACAACTTCGGCGGTCCGCGTGCATCC
TACGCCACCATAACCTAAGCTCAGCATTCGAGGTAAACCTTCTTTCACTA
GCACAAGTAGCTCATACGGGCTCGAGATAGCACGTCATGTGTTGAGCTTG
TCGTCTTGCGCAGTTAGACCATCCGGCACTCACATCGGTGCACCCTCCCT
GCGACTGCCACTCCCTGGCCCCCAACACGATACCGGAAACCGACTTATTT
CTTGGCGTAATGTAAGATAGGATGTAAAGTGTTCAGCTCTTCCCTGTGCA
CCAGCTTAGACCATCCGGCGATGACGTAGGTACACCTTGCCTGCCACGTT
TGCCACTCCCTGTCGCCTGCCACGATGCCGGTTACGACAATTGCCCCTTT
CTAAATTCTTGGCGGGATGCCGGGCATGCCGAACCACCAGGTGGGAGACG
CCCTTGTGCGCGTGAACCACGAGCAGCTCAACCTCCTCAACCACGAGAAC
GTGGTCCGGGTCCTCCGGGGCCTCCTCCGCACCACCGGGAGCCAAGTCCT
CCTCTTGCGCTTCGCCTACGCGGAGGACTCGCCTCGGCTGCTGTGGGCGA
CGACTTCGCCGCCGCCGCCGCCGCCGTTACCGCCCAAGACACCGGTACCG
CGTCCCTCGACCATAGAAAACCCGCGGTCGGAACCGCGAGTGTCCCAGGG
CGGTCTCGACACCGAAGAGGCTTTTCGGTCGGAGTCGTGGCACGGGTCGA
GCAAGCCGCCGGGGGCCCGCGAAGGACAGGGACAGGGGCGAGAGATGGCG
CGGTCGGTGTCGCCGCACCGCCGCACCGGCCCGAACTTGCTGCGCTCGCA
GTCGCTCGGGGAGGGCGGCCCGCAGGCGGTGGCCGGGCTTACCCGTAAGG
GTAGCGGCGCCGAAGCTGGCGACAAGGAAGGGGAACGGGAAGGCTGGACG
GTGGACGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13377:1114..2922+

>mRNA_Ecto-sp13_S_contig13377.2696.1 ID=mRNA_Ecto-sp13_S_contig13377.2696.1|Name=mRNA_Ecto-sp13_S_contig13377.2696.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=747bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13377:1114..2922+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGAGTCTCGAATACCGGCGCACTTGGCGACGGTTACGGAGCTGCCTGT
CTCGGCCATGGATGACCCTAACCCCTTCGTACCCCCCAGCCAGTACGAGG
TCCGCCTGAACGTGTCGAGGGGTCTCGGTCTGTCTCTCAACATCACGGGA
AACGACGTTCGTGTCAAGGGCTTCTCGCCCGTACAGGGCGGCGACATCGG
ACCTGCCCAGGCATGCGGCGACATCCAGGTGGGAGACGCCCTTGTGCGCG
TGAACCACGAGCAGCTCAACCTCCTCAACCACGAGAACGTGGTCCGGGTC
CTCCGGGGCCTCCTCCGCACCACCGGGAGCCAAGTCCTCCTCTTGCGCTT
CGCCTACGCGGAGGACTCGCCTCGGCTGCTGTGGGCGACGACTTCGCCGC
CGCCGCCGCCGCCGTTACCGCCCAAGACACCGGTACCGCGTCCCTCGACC
ATAGAAAACCCGCGGTCGGAACCGCGAGTGTCCCAGGGCGGTCTCGACAC
CGAAGAGGCTTTTCGGTCGGAGTCGTGGCACGGGTCGAGCAAGCCGCCGG
GGGCCCGCGAAGGACAGGGACAGGGGCGAGAGATGGCGCGGTCGGTGTCG
CCGCACCGCCGCACCGGCCCGAACTTGCTGCGCTCGCAGTCGCTCGGGGA
GGGCGGCCCGCAGGCGGTGGCCGGGCTTACCCGTAAGGGTAGCGGCGCCG
AAGCTGGCGACAAGGAAGGGGAACGGGAAGGCTGGACGGTGGACGGG
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