prot_Ecto-sp13_S_contig13377.2696.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13377.2696.1
Unique Nameprot_Ecto-sp13_S_contig13377.2696.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length249
Homology
BLAST of mRNA_Ecto-sp13_S_contig13377.2696.1 vs. uniprot
Match: D8LF16_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF16_ECTSI)

HSP 1 Score: 423 bits (1087), Expect = 2.400e-133
Identity = 231/251 (92.03%), Postives = 233/251 (92.83%), Query Frame = 0
Query:    1 RESRIPAHLATVTELPVSAMDDPNPFVPPSQYEVRLNVSRGLGLSLNITGNDVRVKGFSPVQGGDIGPAQACGDIQVGDALVRVNHEQLNLLNHENVVRVLRGLLRTTGSQVLLLRFAYAEDSPRLLWATTSPXXXXX--LPPKTPVPRPSTIENPRSEPRVSQGGLDTEEAFRSESWHGSSKPPGAREGQGQGREMARSVSPHRRTGPNLLRSQSLGEGGPQAVAGLTRKGSGAEAGDKEGEREGWTVDG 249
            RESRIP HL TVTELPVSAMDDPNPFVPPSQYEVRLNVSRGLGLSLNITGNDVRVKGFS VQGGDIGPAQACGDIQVGDALVRVNHEQLNLLNHENVVRVLRGLLRTTGSQVLLLRFAYAEDSPRLL ATT  XXXXX  LPPKT VPRPST+ENPRSEPRVS GGLDTEEAFRSESWHGSSKPP AREGQGQGREMARSVSPHRRTGP +LRSQSLGEGGP  VAG  RKGSGAEAG KEGE EGWTVDG
Sbjct:   22 RESRIPTHLVTVTELPVSAMDDPNPFVPPSQYEVRLNVSRGLGLSLNITGNDVRVKGFSTVQGGDIGPAQACGDIQVGDALVRVNHEQLNLLNHENVVRVLRGLLRTTGSQVLLLRFAYAEDSPRLLRATTXXXXXXXXXLPPKTRVPRPSTMENPRSEPRVSHGGLDTEEAFRSESWHGSSKPPRAREGQGQGREMARSVSPHRRTGPAVLRSQSLGEGGPPTVAGFARKGSGAEAGHKEGEWEGWTVDG 272          
BLAST of mRNA_Ecto-sp13_S_contig13377.2696.1 vs. uniprot
Match: A0A6H5JMH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH3_9PHAE)

HSP 1 Score: 333 bits (855), Expect = 3.790e-112
Identity = 192/249 (77.11%), Postives = 195/249 (78.31%), Query Frame = 0
Query:    1 RESRIPAHLATVTELPVSAMDDPNPFVPPSQYEVRLNVSRGLGLSLNITGNDVRVKGFSPVQGGDIGPAQACGDIQVGDALVRVNHEQLNLLNHENVVRVLRGLLRTTGSQVLLLRFAYAEDSPRLLWATTSPXXXXXLPPKTPVPRPSTIENPRSEPRVSQGGLDTEEAFRSESWHGSSKPPGAREGQGQGREMARSVSPHRRTGPNLLRSQSLGEGGPQAVAGLTRKGSGAEAGDKEGEREGWTVDG 249
            RESRIPAHLATVTELPVSAMDDPNPFVPPSQYEV                                           GDALVRVNHEQLNLLNHENVVRVLRGLLRTTGSQVLLLRFAYAEDSPRLL ATTSPXXXXXLPPKTP PRPST+ENP+SEPRVSQ  LDTEEAFRSESWHGS KPP AR+GQGQGREMARSVSPHRRTGP LLRSQSLGEGGP AVAGL  KGSGAEAGDKEGEREGW VDG
Sbjct:   22 RESRIPAHLATVTELPVSAMDDPNPFVPPSQYEV-------------------------------------------GDALVRVNHEQLNLLNHENVVRVLRGLLRTTGSQVLLLRFAYAEDSPRLLRATTSPXXXXXLPPKTPGPRPSTMENPQSEPRVSQSDLDTEEAFRSESWHGSRKPPRARKGQGQGREMARSVSPHRRTGPALLRSQSLGEGGPPAVAGLAHKGSGAEAGDKEGEREGWAVDG 227          
BLAST of mRNA_Ecto-sp13_S_contig13377.2696.1 vs. uniprot
Match: A0A835Z5M4_9STRA (PDZ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5M4_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.020e-22
Identity = 64/142 (45.07%), Postives = 83/142 (58.45%), Query Frame = 0
Query:   10 ATVTELPVSAMDDPNPFVPPSQYEVRLNVSRGLGLSLNITGNDVRVKGFSPVQGGDIGPAQACGDIQVGDALVRVNHEQLNLLNHENVVRVLRGLLRTTGSQVLLLRFAYAEDSPRLLWATTSPXXXXXL----PPKTPVPR 147
            A++  LP S++DDP+PFVPPSQY  RL+ S+GLG++L ITG  VRV GF+P   G +  AQ  G I VGD L+ VN   L L+   +++ VLR L R     V L RFAY ++   LL A   P          PP+ P PR
Sbjct:   91 ASIGSLPASSVDDPSPFVPPSQYIARLDASKGLGINLQITGVKVRVGGFAPAANGAMSAAQLSGIISVGDVLLGVNGRDLTLMRFNDILGVLRALPRIKEGTVTL-RFAYGQEEQLLLEAEQEPGHLRAARSQSPPQLPPPR 231          
BLAST of mRNA_Ecto-sp13_S_contig13377.2696.1 vs. uniprot
Match: A0A4D9D6T8_9STRA (PDZ domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6T8_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 6.330e-7
Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = 0
Query:   31 QYEVRLNVSRGLGLSLNITGNDVRVKGFSPVQGGDIGPAQACGDIQVGDALVRVNHEQLNLLNHENVVRVLRGLLRTTGSQVLLLRFAYAEDS 123
            +YEV+L  S GLGL L   GN V V+G + +  G   PAQ CG I+ GDAL+ VN   L  L  ++ + VL  L R   +++LL RF   E S
Sbjct:  675 EYEVQLVASGGLGLDLAFVGNGVVVRGLAFLADGRPSPAQLCGRIRAGDALLAVNGIALEPLALKDKLGVLLALAREEDTEILL-RFMAKEAS 766          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13377.2696.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LF16_ECTSI2.400e-13392.03PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JMH3_9PHAE3.790e-11277.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z5M4_9STRA1.020e-2245.07PDZ domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A4D9D6T8_9STRA6.330e-743.01PDZ domain-containing protein n=2 Tax=Monodopsidac... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.42.10coord: 31..116
e-value: 5.5E-9
score: 38.0
IPR001478PDZ domainPROSITEPS50106PDZcoord: 33..102
score: 10.576
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 16..105

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13377contigEcto-sp13_S_contig13377:1114..2922 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13377.2696.1mRNA_Ecto-sp13_S_contig13377.2696.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13377 1114..2922 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13377.2696.1 ID=prot_Ecto-sp13_S_contig13377.2696.1|Name=mRNA_Ecto-sp13_S_contig13377.2696.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=249bp
RESRIPAHLATVTELPVSAMDDPNPFVPPSQYEVRLNVSRGLGLSLNITG
NDVRVKGFSPVQGGDIGPAQACGDIQVGDALVRVNHEQLNLLNHENVVRV
LRGLLRTTGSQVLLLRFAYAEDSPRLLWATTSPPPPPPLPPKTPVPRPST
IENPRSEPRVSQGGLDTEEAFRSESWHGSSKPPGAREGQGQGREMARSVS
PHRRTGPNLLRSQSLGEGGPQAVAGLTRKGSGAEAGDKEGEREGWTVDG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
IPR036034PDZ_sf