mRNA_Ecto-sp13_S_contig13370.2691.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13370.2691.1
Unique NamemRNA_Ecto-sp13_S_contig13370.2691.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13370.2691.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 3.370e-41
Identity = 89/177 (50.28%), Postives = 114/177 (64.41%), Query Frame = 2
Query:  200 FSEWAREDDDFEQRFKDFPVAFDHPYHGGPVFNMSDPPHRWKKIVNSLHQSDLPWQSRKLARLWVDPVTGEYDLVPFFLKTLEKVYYNEELGGGAFTQNEQVATLQRFGNMRPEQFNWNSYNNMNVGLAAKNLSGSAVRACNSANAKLVANGQAPNAEIACYAELAH*MNDYVDIMN 730
            F EWA      E+RF DFP+AF+HP+HG PVFNMS PPH    +VN+L  S LP + R L  L+ +  T E++ V F LKTLE V+ NEE GGG+ +  E  + L+RF    PE  + NS+N M+V L+AK +S +AV  C  A  KL +    PN EIACYAELA  MND++DIMN
Sbjct:  302 FGEWADPKSRLEERFADFPMAFNHPHHGEPVFNMSGPPHLLX-VVNALWYSSLPSKQRHLKNLFWNRDTEEFEWVSFSLKTLETVWVNEERGGGSLSAAEVASNLRRFLKFEPEMLDRNSHNCMSVRLSAKCVSRTAVYVCGCAQEKLAS----PNGEIACYAELAEVMNDFLDIMN 473          
BLAST of mRNA_Ecto-sp13_S_contig13370.2691.1 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 2.050e-40
Identity = 87/177 (49.15%), Postives = 115/177 (64.97%), Query Frame = 2
Query:  200 FSEWAREDDDFEQRFKDFPVAFDHPYHGGPVFNMSDPPHRWKKIVNSLHQSDLPWQSRKLARLWVDPVTGEYDLVPFFLKTLEKVYYNEELGGGAFTQNEQVATLQRFGNMRPEQFNWNSYNNMNVGLAAKNLSGSAVRACNSANAKLVANGQAPNAEIACYAELAH*MNDYVDIMN 730
            FSEWA+ D  FEQR KD+PVAF HP+H GPVFNMSDP H  KK+VN+L  S L  + R L  LW +P+T   +L  F LKTLEK +  EE      T  E+ ATL+RF  M     + +S+  M+V L+AK +S +A+    SA  KL+A  + P+ E+ACYA++A  MND++DIMN
Sbjct:  517 FSEWAKSDSVFEQRHKDYPVAFKHPHHDGPVFNMSDPVHLLKKVVNALWYSGLDSKERHLQNLWWNPLTDAPELASFSLKTLEKAWREEEGHRANRTAAERAATLRRFLKMDAACLDRDSHTCMSVKLSAKCVSKTAMHVIASAQGKLLALDKPPSGELACYADVAEVMNDFLDIMN 693          
BLAST of mRNA_Ecto-sp13_S_contig13370.2691.1 vs. uniprot
Match: D8LK65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK65_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 1.850e-38
Identity = 74/131 (56.49%), Postives = 88/131 (67.18%), Query Frame = 2
Query:  200 FSEWAREDDDFEQRFKDFPVAFDHPYHGGPVFNMSDPPHRWKKIVNSLHQSDLPWQSRKLARLWVDPVTGEYDLVPFFLKTLEKVYYNEELGGGAFTQNEQVATLQRFGNMRPEQFNWNSYNNMNVGLAAK 592
            FSEWAR D  FE+R  DF VAF HP HGGPVFNMSDP H  KK+VN+L  SD+P + R L +LW +    +Y+ V F LKTLEKV+  EE GGG  +  EQ A L RF    PE F  NS+N M+VGL+AK
Sbjct:  131 FSEWARGDSAFEKRMGDFKVAFKHPSHGGPVFNMSDPVHLLKKVVNALWHSDIPSKQRDLKKLWYNEAAEDYEWVSFSLKTLEKVWKEEEAGGGVRSVAEQAAHLIRFLKFDPEMFTRNSHNCMSVGLSAK 261          
BLAST of mRNA_Ecto-sp13_S_contig13370.2691.1 vs. uniprot
Match: A0A6H5K071_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K071_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 4.930e-36
Identity = 74/126 (58.73%), Postives = 93/126 (73.81%), Query Frame = 2
Query:  353 DLPWQSRKLARLWVDPVTGEYDLVPFFLKTLEKVYYNEELGGGAFTQNEQVATLQRFGNMRPEQFNWNSYNNMNVGLAAKNLSGSAVRACNSANAKLVANGQAPNAEIACYAELAH*MNDYVDIMN 730
            DLPW+SR LA++ VDP TG Y+LV F LKTLEKV+Y EE GGG +   E+ A L R+  +  EQFN + +N M+V LA K+LS +AVR CN ANAKLV +GQ P+  IACYAE+A  +ND+VDIMN
Sbjct:  363 DLPWKSRNLAKVCVDPETGGYELVEFSLKTLEKVWYTEEKGGGKWLLEEKTAQLTRYSKVVSEQFNRSGFNCMSVRLAVKSLSATAVRMCNDANAKLVRSGQKPDLSIACYAEMARQVNDFVDIMN 488          
BLAST of mRNA_Ecto-sp13_S_contig13370.2691.1 vs. uniprot
Match: A0A6H5KYD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD6_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.520e-29
Identity = 64/118 (54.24%), Postives = 76/118 (64.41%), Query Frame = 2
Query:  239 RFKDFPVAFDHPYHGGPVFNMSDPPHRWKKIVNSLHQSDLPWQSRKLARLWVDPVTGEYDLVPFFLKTLEKVYYNEELGGGAFTQNEQVATLQRFGNMRPEQFNWNSYNNMNVGLAAK 592
            R KDF VAF HP HG PVFNMS+P H  KK+VN+L  S L  + R L  LW DP T E + V F LKTLE+V+  EE GGG  +  EQ A L RF  + PE F  NS+N M+V L+AK
Sbjct:    2 RHKDFKVAFRHPQHGRPVFNMSEPVHLLKKVVNALWHSGLADKQRDLKGLWWDPKTEEEEWVSFSLKTLEEVWNQEEAGGGIRSGAEQAAHLSRFRKVNPEMFYRNSHNCMSVKLSAK 119          
BLAST of mRNA_Ecto-sp13_S_contig13370.2691.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 8.670e-29
Identity = 72/160 (45.00%), Postives = 93/160 (58.13%), Query Frame = 2
Query:  251 FPVAFDHPYHGGPVFNMSDPPHRWKKIVNSLHQSDLPWQSRKLARLWVDPVTGEYDLVPFFLKTLEKVYYNEELGGGAFTQNEQVATLQRFGNMRPEQFNWNSYNNMNVGLAAKNLSGSAVRACNSANAKLVANGQAPNAEIACYAELAH*MNDYVDIMN 730
            FPVAF HP H GP+FNMSDPPH  KKI N+   SD   + R+LA +W     G  DLV F L T E+VY   E  G   +Q E+VA++  F  + P  FN NS+N MNV  +AK LSG+ V         L+  G+  + E+ CYA LA  M+ ++DI N
Sbjct:  368 FPVAFPHPVHLGPIFNMSDPPHILKKIANTCWHSDQDSKKRELA-MWCGDEEGNTDLVRFSLATAERVYNQVENDGNTLSQEEKVASITTFRKVVPSCFNRNSWNCMNVSYSAKVLSGTIVCMIEKVQRDLLTMGKPLDLELDCYAALAAKMDAFIDIFN 526          
BLAST of mRNA_Ecto-sp13_S_contig13370.2691.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 1.260e-24
Identity = 71/177 (40.11%), Postives = 93/177 (52.54%), Query Frame = 2
Query:  200 FSEWAREDDDFEQRFKDFPVAFDHPYHGGPVFNMSDPPHRWKKIVNSLHQSDLPWQSRKLARLWVDPVTGEYDLVPFFLKTLEKVYYNEELGGGAFTQNEQVATLQRFGNMRPEQFNWNSYNNMNVGLAAKNLSGSAVRACNSANAKLVANGQAPNAEIACYAELAH*MNDYVDIMN 730
            F  W +     E  F  F V F HP H   VFNMSDP H  KKIVN+L  SD+P + R+L  +W      E     F LKT ++VY + E    + T  E+ ATL  F  M    FN  ++  MNV L+AK +SG+ VRA     A     G++P+  + CY  LA  +ND+VDI N
Sbjct:  669 FCHWIKGPK--EGSFAGFKVGFLHPVHLHEVFNMSDPMHILKKIVNALWHSDIPAKQRQLG-MWCVTDQDELKFSQFSLKTAQRVYNDVEYDNDSMTPEERAATLTIFPGMPVGAFNRTNFTCMNVKLSAKVVSGTIVRAIREVRANQETRGESPDLALGCYEGLAVHLNDFVDIFN 842          
BLAST of mRNA_Ecto-sp13_S_contig13370.2691.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 2.290e-24
Identity = 71/177 (40.11%), Postives = 93/177 (52.54%), Query Frame = 2
Query:  200 FSEWAREDDDFEQRFKDFPVAFDHPYHGGPVFNMSDPPHRWKKIVNSLHQSDLPWQSRKLARLWVDPVTGEYDLVPFFLKTLEKVYYNEELGGGAFTQNEQVATLQRFGNMRPEQFNWNSYNNMNVGLAAKNLSGSAVRACNSANAKLVANGQAPNAEIACYAELAH*MNDYVDIMN 730
            F  W +     E  F  F V F HP H   VFNMSDP H  KKIVN+L  SD+P + R+L  +W      E     F LKT ++VY + E    + T  E+ ATL  F  M    FN  ++  MNV L+AK +SG+ VRA     A     G++P+  + CY  LA  +ND+VDI N
Sbjct:  760 FCHWIKGPK--EGSFAGFKVGFLHPVHLHEVFNMSDPMHILKKIVNALWHSDIPAKQRQLG-MWCVTDQDELKFSQFSLKTAQRVYNDVEYDNDSMTPEERPATLTIFPGMPVGAFNRTNFTCMNVKLSAKVVSGTIVRAIREVRANQETRGESPDLALGCYEGLAVHLNDFVDIFN 933          
BLAST of mRNA_Ecto-sp13_S_contig13370.2691.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 3.900e-22
Identity = 69/177 (38.98%), Postives = 90/177 (50.85%), Query Frame = 2
Query:  200 FSEWAREDDDFEQRFKDFPVAFDHPYHGGPVFNMSDPPHRWKKIVNSLHQSDLPWQSRKLARLWVDPVTGEYDLVPFFLKTLEKVYYNEELGGGAFTQNEQVATLQRFGNMRPEQFNWNSYNNMNVGLAAKNLSGSAVRACNSANAKLVANGQAPNAEIACYAELAH*MNDYVDIMN 730
            F  W +     E  F  F V   HP H   VFNMSDP H  KKIVN+L  SD+P + R+L  +W      E     F LKT ++VY + E    + T  E+ ATL  F  M    FN  ++  MNV L+AK +SG+ VRA     A     G+ P+  + CY    H +ND+VDI N
Sbjct:  567 FCRWIKGPQ--EGSFTSFKVGILHPVHLHEVFNMSDPMHILKKIVNALWHSDIPAKQRQLG-MWCVTDQDELKFSQFSLKTAQRVYNDVEYDNNSITPEERAATLTIFPGMPVSAFNRTNFTCMNVKLSAKVVSGTIVRAIREVRANRETRGEPPDLALGCYE--GH-LNDFVDIFN 737          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13370.2691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5K7Z3_9PHAE3.370e-4150.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFP1_9PHAE2.050e-4049.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK65_ECTSI1.850e-3856.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K071_9PHAE4.930e-3658.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYD6_9PHAE1.520e-2954.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR14_9PHAE8.670e-2945.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI1.260e-2440.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVF4_9PHAE2.290e-2440.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5M0_9PHAE3.900e-2238.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13370contigEcto-sp13_S_contig13370:461..1517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size732
Hectar predicted targeting categoryother localisation
Exons2
Cds size405
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462714.128809-UTR-Ecto-sp13_S_contig13370:460..4891681462714.128809-UTR-Ecto-sp13_S_contig13370:460..489Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13370 461..489 -
1681462714.1545405-UTR-Ecto-sp13_S_contig13370:1219..15171681462714.1545405-UTR-Ecto-sp13_S_contig13370:1219..1517Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13370 1220..1517 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462714.137788-CDS-Ecto-sp13_S_contig13370:489..6001681462714.137788-CDS-Ecto-sp13_S_contig13370:489..600Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13370 490..600 -
1681462714.1461744-CDS-Ecto-sp13_S_contig13370:925..12191681462714.1461744-CDS-Ecto-sp13_S_contig13370:925..1219Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13370 926..1219 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13370.2691.1prot_Ecto-sp13_S_contig13370.2691.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13370 490..1219 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13370.2691.1

>prot_Ecto-sp13_S_contig13370.2691.1 ID=prot_Ecto-sp13_S_contig13370.2691.1|Name=mRNA_Ecto-sp13_S_contig13370.2691.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=135bp
MSDPPHRWKKIVNSLHQSDLPWQSRKLARLWVDPVTGEYDLVPFFLKTLE
KVYYNEELGGGAFTQNEQVATLQRFGNMRPEQFNWNSYNNMNVGLAAKNL
SGSAVRACNSANAKLVANGQAPNAEIACYAELAH*
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mRNA from alignment at Ecto-sp13_S_contig13370:461..1517-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13370.2691.1 ID=mRNA_Ecto-sp13_S_contig13370.2691.1|Name=mRNA_Ecto-sp13_S_contig13370.2691.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1057bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13370:461..1517- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTTAATCATCAACCTTTAGCGCATACCAACCATAAGGGTTCCTCCC TTGACGACTGCAACACAACGCATGATGGCACCACGCAACGTAACACCATA TCGCTTGCGTCCACCTGCTTCGCCAACGCGCCCACCTTTTGTCGCTCCTG CCCCGAATGCTTTTAGCCGAACCTCGCATAAAGATGACGCAACGCACACT TTTCAGAGTGGGCGAGAGAAGATGATGACTTCGAACAGCGCTTCAAGGAT TTCCCCGTCGCCTTCGACCATCCATACCACGGAGGTCCGGTCTTCAACAT GTCGGACCCCCCTCACCGTTGGAAGAAGATCGTTAACTCGCTCCACCAAA GTGACCTTCCCTGGCAGTCGAGGAAGCTTGCTAGACTTTGGGTTGATCCG GTGACCGGGGAGTATGACCTGGTTCCTTTTTTTCTGAAGACTCTTGAGAA GGTTTACTACAACGAGGAACTAGGCGGGGGGGCGTTCACGCAAAATGAAC AGGTCGCCACGCTCCAGAGGTTCGGGAATATGAGGCCAGAGCAGTTCAAC TGGAACAGCTACAACAATATGAATGTGGGGCTCGCAGCGAAGGTGCGTCG TCGATGTACTTCTGAGGTGTCTACACTTCAAGATTCCGAACTCCCGTCGT GTGTTTGTTATTTTGGGTTTATTTGCAGGGAATGAACCCACGGCCATATC GGGGGTGGCTCCCCCCTCCCGCTATCCACGGCAAGGCATACCGTGTCCTT GCATCGAAATCTGGTTGACGCGTGGCTCATTGTTTTGGTTCAAATCCATT GCCACACAATGGTGGATAAGAATGGTTTGAGATCGCCTAGGGTATAGACG GCGAATTTATCTTACGACAAGAATACTCTTGCCTTCCAATCCCGTCTGCC ATCATTGTGCTGTTCAGAACCTGTCTGGCAGCGCGGTTCGGGCCTGCAAC AGCGCGAACGCAAAGCTGGTCGCGAACGGGCAGGCGCCGAACGCCGAGAT AGCTTGCTACGCGGAGTTGGCGCATTAGATGAACGATTACGTGGACATCA TGAACGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13370:461..1517-

>mRNA_Ecto-sp13_S_contig13370.2691.1 ID=mRNA_Ecto-sp13_S_contig13370.2691.1|Name=mRNA_Ecto-sp13_S_contig13370.2691.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13370:461..1517- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGACCCCCCTCACCGTTGGAAGAAGATCGTTAACTCGCTCCACCA
AAGTGACCTTCCCTGGCAGTCGAGGAAGCTTGCTAGACTTTGGGTTGATC
CGGTGACCGGGGAGTATGACCTGGTTCCTTTTTTTCTGAAGACTCTTGAG
AAGGTTTACTACAACGAGGAACTAGGCGGGGGGGCGTTCACGCAAAATGA
ACAGGTCGCCACGCTCCAGAGGTTCGGGAATATGAGGCCAGAGCAGTTCA
ACTGGAACAGCTACAACAATATGAATGTGGGGCTCGCAGCGAAGAACCTG
TCTGGCAGCGCGGTTCGGGCCTGCAACAGCGCGAACGCAAAGCTGGTCGC
GAACGGGCAGGCGCCGAACGCCGAGATAGCTTGCTACGCGGAGTTGGCGC
ATTAG
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