mRNA_Ecto-sp13_S_contig1336.2685.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1336.2685.1
Unique NamemRNA_Ecto-sp13_S_contig1336.2685.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1336.2685.1 vs. uniprot
Match: A0A6H5KCU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU2_9PHAE)

HSP 1 Score: 303 bits (775), Expect = 5.630e-91
Identity = 179/215 (83.26%), Postives = 184/215 (85.58%), Query Frame = 1 
Query:  151 MPRQTRQASSPATNPSPSTAGSFPPAXXXXXXXXXXXXXXXXXXXXXXXXGSPEQVPADRELQYLCPRPGCNTNLSFKENIRKDRADYPACRNFSAGTCAWTGLYLIKYLGKVSWLCASEFEVGEVVWAYTIPDVERPACYINWCLNAETCIVLKEVGVPVNVRLAGEDD---VGKRCHDCKRARP*WTLDTDQLIAKSTQPLHVGCAMKHRREL 786
            MPRQ+RQASSPAT P           XXXXXXXXXXXXXXXXXXXXXXXX SPEQVPADRELQYLCPR GCNTNL  KENIRKDRADYPACRNF+AGTCAWTGL LIKY GKV WLCASEFEVGEVVWA+TIPDVERPAC+INWCLNAE CIVLK  GVPVNVRLAGEDD   VGKRC DCKRA P   LDTDQLIAKSTQP HVGCA+KHRREL
Sbjct:    1 MPRQSRQASSPATKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPEQVPADRELQYLCPRTGCNTNLFLKENIRKDRADYPACRNFNAGTCAWTGL-LIKYPGKVCWLCASEFEVGEVVWAHTIPDVERPACHINWCLNAEACIVLKGDGVPVNVRLAGEDDANCVGKRCRDCKRADP-TILDTDQLIAKSTQPFHVGCAVKHRREL 213
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BLAST of mRNA_Ecto-sp13_S_contig1336.2685.1 vs. uniprot
Match: D8LET1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LET1_ECTSI)

HSP 1 Score: 231 bits (590), Expect = 6.300e-66
Identity = 117/153 (76.47%), Postives = 120/153 (78.43%), Query Frame = 1 
Query:  301 GSPEQVPADRELQYLCPRPGCNTNLSFKENIRKDRADYPACRNFSAGTCAWT-GLYLIKYLGKVSWLCASEFEVGEVVWAYTIPDVERPACYINWCLNAETCIVLKEVGVPVNVRLAGEDDVGKRCHDCKRARP*WTLDTDQLIAKSTQPLHV 756
            GSPEQVPADRELQ+LCP  GCNTNL  KENI KDRADY  C    AGT A      LIKY GKV WLCASEFEVGEVVWAYT PDVERPACYINWCLN + CI+LKE G PVNVRLAGEDDV KRC DCKRA     LDTDQLIAKSTQP HV
Sbjct:   53 GSPEQVPADRELQHLCPGTGCNTNLFLKENIHKDRADY--CTT-PAGTLAPVPARLLIKYPGKVCWLCASEFEVGEVVWAYTTPDVERPACYINWCLNEDACIILKEEGAPVNVRLAGEDDVAKRCSDCKRADS-TILDTDQLIAKSTQPCHV 201
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BLAST of mRNA_Ecto-sp13_S_contig1336.2685.1 vs. uniprot
Match: D8LKW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW7_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 1.570e-50
Identity = 89/114 (78.07%), Postives = 91/114 (79.82%), Query Frame = 1 
Query:  322 ADRELQYLCPRPGCNTNLSFKENIRKDRADYPACRNFSAGTCAWTGLYLIKYLGKVSWLCASEFEVGEVVWAYTIPDVERPACYINWCLNAETCIVLKEVGVPVNVRLAGEDDV 663
            ADRE QYLCP  GCNTNL       KDRADYPACR FS GTC WTGL LIKY G V WLCASEFEVGEVVWAYTIPDVERPACYI WCLN +  I+LKE GVPVN RLAGEDDV
Sbjct:  102 ADREPQYLCPGTGCNTNL------HKDRADYPACRTFSVGTCVWTGL-LIKYPGNVCWLCASEFEVGEVVWAYTIPDVERPACYITWCLNGDAGIILKEEGVPVNARLAGEDDV 208
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BLAST of mRNA_Ecto-sp13_S_contig1336.2685.1 vs. uniprot
Match: D7FWQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ2_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.370e-12
Identity = 34/45 (75.56%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:  301 GSPEQVPADRELQYLCPRPGCNTNLSFKENIRKDRADYPACRNFS 435
            GS EQVPADRE QYLCP  GCNTNL  KENI K RADYPACR  +
Sbjct:   83 GSAEQVPADRESQYLCPGTGCNTNLFLKENIHKGRADYPACRTLA 127
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1336.2685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KCU2_9PHAE5.630e-9183.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LET1_ECTSI6.300e-6676.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LKW7_ECTSI1.570e-5078.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWQ2_ECTSI1.370e-1275.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1336contigEcto-sp13_S_contig1336:1795..6324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3233
Hectar predicted targeting categoryother localisation
Exons3
Cds size552
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462713.6557326-UTR-Ecto-sp13_S_contig1336:1794..43251681462713.6557326-UTR-Ecto-sp13_S_contig1336:1794..4325Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1336 1795..4325 -
1681462713.7126324-UTR-Ecto-sp13_S_contig1336:6174..63241681462713.7126324-UTR-Ecto-sp13_S_contig1336:6174..6324Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1336 6175..6324 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462713.6739085-CDS-Ecto-sp13_S_contig1336:4325..43671681462713.6739085-CDS-Ecto-sp13_S_contig1336:4325..4367Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1336 4326..4367 -
1681462713.6889873-CDS-Ecto-sp13_S_contig1336:5157..52671681462713.6889873-CDS-Ecto-sp13_S_contig1336:5157..5267Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1336 5158..5267 -
1681462713.6993346-CDS-Ecto-sp13_S_contig1336:5774..61741681462713.6993346-CDS-Ecto-sp13_S_contig1336:5774..6174Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1336 5775..6174 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1336.2685.1prot_Ecto-sp13_S_contig1336.2685.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1336 4326..6174 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1336.2685.1

>prot_Ecto-sp13_S_contig1336.2685.1 ID=prot_Ecto-sp13_S_contig1336.2685.1|Name=mRNA_Ecto-sp13_S_contig1336.2685.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=184bp
MPRQTRQASSPATNPSPSTAGSFPPAASTAAPTPPPARGAGSSASAGSSA
GSPEQVPADRELQYLCPRPGCNTNLSFKENIRKDRADYPACRNFSAGTCA
WTGLYLIKYLGKVSWLCASEFEVGEVVWAYTIPDVERPACYINWCLNAET
CIVLKEVGVPVNVRLAGEDDVGKRCHDCKRARP*
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mRNA from alignment at Ecto-sp13_S_contig1336:1795..6324-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1336.2685.1 ID=mRNA_Ecto-sp13_S_contig1336.2685.1|Name=mRNA_Ecto-sp13_S_contig1336.2685.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4530bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1336:1795..6324- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTGATCGTTGACCGTGACTTTTGTCAAAAAGAGGGATGCGCTCTGACG
ATGGCTCTCCTCGCATCTACTCCTTCTACACCCCCCCTCTCATCACCAAT
CACAGCTCACACCGCCAGAGCAGCTTTAACGCAATAAACACCGTACATCA
ATGCCTCGCCAAACCCGCCAAGCCTCCAGCCCCGCTACCAACCCATCGCC
CTCCACCGCTGGATCCTTTCCGCCGGCTGCTTCTACGGCTGCTCCTACCC
CGCCGCCCGCGCGCGGAGCCGGCTCATCTGCGAGTGCTGGCTCATCTGCC
GGCTCGCCCGAACAAGTCCCGGCCGACCGCGAGCTGCAATACCTCTGCCC
ACGCCCCGGTTGCAACACCAACCTCTCCTTCAAGGAAAATATCCGCAAAG
ACAGGGCCGACTACCCCGCCTGCAGGAACTTTAGCGCCGGCACCTGCGCG
TGGACCGGCCTTTATTTGATCAAGTACCTCGGAAAGGTCTCCTGGCTCTG
CGCCTCCGAGTTCGAGGTCGGCGAAGTGGTGTGGGCATACACCATCCCAG
GTGAGAGCTTTCGTATGCCTACAGCAGTATAATGAATGATCTTCCTTCAC
GGATGGATGTAATCTGCAGCGGCAGGCTTGGAGTTCGCGCGTTGATGTTG
TGGTTGTTCGTATGTATGAACGCTATTCATATTTTTTGCCGACGCACATC
ATGTCCATACAAAGCTGTTTACGCCACACAACATTTAGGCGCTCTTCATT
ATTTTTCGGCGCTCTTCGTGATGGGGTATGAATCATATGCCCACGTCGTA
GAACTAACACGATTCATTCCTGAATTCTGTCACAAGAAAACCACACAACC
ACCAAGCAACCTTGAAAGTTTTTTTGTGCTGAGCTGTGTAAGGTTGTCAC
ACAAACTTTGCCCCTCCCTTCGCTGTTGAATCACTCAGAAAATGTACAGA
TCTACTTCATTCAAGAAAACGCTGCAACAAAAAAACGTTTTTCACTGACG
AGTTTTCCGCCTCCATGTATGTATGTATGTCAACTTCTCTTTTTTGTGAT
CAAACAGACGTGGAACGCCCGGCGTGCTATATTAACTGGTGCCTCAACGC
CGAGACCTGCATCGTCCTCAAGGAGGTCGGCGTCCCCGTCAACGTTAGGC
TGGCCGGCGAGGACGACGTGAGTGCTTTATTTCTGTTTCACAAAACTACT
TTTCCCGTCCCTACCCCTTCCTTCTGCCTGCCGAACACAAAGTAACATCA
AACTCTTATTTATATGTCCTCGCCCGTCAAGATGCGCATTGTACGTGTTT
GGCATGTGTCTGATGTCCTTTCGCGTATCACATATATCTATATATATGCG
CACGCACATGCTCGGTACAATGTGATCCTCCTTTTTGCTGCGAAAAGACA
ACCGCTGACAACGCAAGACACCATTTTTTCTTCGTTCCAACACCATTTTT
TTTTGTGTTCCCGCCTGTTGCCGTGGAATTGCGCACGTGTTCGGTTATAT
GTAGTGTTCGCCCTGTCCTTCCTGCTGCGCAAAGACAAAATGATGACGTA
AGACACATGTTTGTAGTTCCTGCCGATAATATGCGCACTGCCATGAACAC
AACACCACAGCTTTCCTGCCCGAACATATCCGCACGCACATGCTCGGTGC
AACAAGACGTTTTTTTTTTGGTGTTTGACACCATTATTTTCAGCGTGAAT
ATGCGCACATACATGTTCATTATGTATAGTATGTGTTCCTGTCTTTGTTG
CTGCGCAAACACTCAAGCTGGCGCAGGACCTACTTCTTTTTGCATTCCTA
GTGTTTGTGCACACTTTTTTTTTCGTGTTCCACCCCATTATTTTCAGTCC
TCTTTGTCCTGTTCTTGACACTTTATTTGCTGCGCAACGACATAATGGTG
ACGCAGTACGCATCTTTTTTCCCTTACACATTTTTCTCGTGCAATTCATA
CAGACAGGTTGGCAAGCGCTGCCATGACTGCAAACGTGCCCGACCATAGT
GGACACTGGACACGGACCAGTTAATCGCCAAGTCCACCCAGCCCTTGCAC
GTGGGCTGTGCCATGAAACACCGTCGGGAGCTCGAGGACAAGATCAACGA
AAGCTGCTCGCCTAGTCCTAACGCAACCCGTCGACCACATCAACGACAAG
CTCCACAACCCCATCCCAGATTCTGGACGAAACACCTTCTTCGACTCCAT
ATTTGCTGGAAAAAATTCAGGGAACATTCTAATAGCTGATCAAACTTAAA
AAAACTACCACAATGTTCCAGAGTGCCTCCAACTCATGTCGGTTCCAACT
GCCTATGCAACCCACGTCGAGATTGCAGCTGCCCGACAGTTACACAACCA
TAACATAAGAGTTACCCTCGTCGGCCAACCCTTTCCACCTCCTCCGTCCC
ATGATACATGCGATGTTTTGTACGGGGGCGAGCACTACCGAACTTTGCAA
TTTAATCCATGACTTCACTACTTCCTTTCCTACTTGCGTCACCCCTGGGG
GGCCTGACACCAACGTCCCGGAGGGGAACCTTGTAAAATGTGTATTTCGA
CATTCTTAATTCAAACAATAAGAGCTTCTCTTACAAGGCGAGCATTTCTC
TCGCTTCCGTTGCTGGCCTGGGTGGAAAGCGCTTGTTCGTGTATACACGG
AGGGAAAAGAGTGCTAAACTCTTCTCGCATCAAAAGTCGAAGGCAAAGTA
TACCGCAGGAGGGGTGGGTAGGGGGCCTCGGGGAAAAGGGACAGAAGGTG
TACCGATTCTGGCAAAAGTCAATCGACGGATACCCTGCGAATCGGGTTCT
CCTTAATTAACAGAAACCTTCTGTGTGGCCACGGGTTCGAGAAATCGGCA
ACAAGTGCTATGAGCGCTGTATTTTCAAGTGAAGACAAAAAAAAAAGAGC
AGTATCCTCGCAACCTTGTGACGTCTGGACGTGATGGGTAACCTTGGTGC
CGTCAGTCACACGAACTGCGATTTCTTCTCAATATCCACCCCAACGAAGT
ACCTCTACGAGAAGACCGTTACGGTCTATAGAGGTCTCGCGGTTGTGTGT
CTGTCAGCATGTCGCCGTTCACTCCGAAGGTCCGAACGATGCGCTTTTTT
TACCCGAATGTCCGATGCGCGAGAAATCAGACCGCCGGCCGTCGTGCACT
GCTTTGGGCGCCCTCAGCAAGTTTCAGCTTGATTGGCGCCTCCTGCGTTG
TTATCTATTGGCTGTGTCGGTGACCGGCCTTCTCAAGCACGAACACGAGC
GAGCATGCAGGAGGTGCTTCCGGCACCAAATTGTTCCGATCTCGACGAGT
TTGTGCCTAAAAGTTACCTATCCTCCACCATAGTGAAGCCCCGTCAAATC
TACAGCTGGATTGCCAGGTTCTTCAACGCTGGAATAGCTGCGTGTCTACC
AATTTCGCCTGCCAACGAGAGGTTCGGGTCACACCGCTGCAACTTTCCAA
CGCGGGGGGGGAGTTTATTCCGCCGCATGTCGCACGCACTCGACAACTTG
ATGACTCTCTTTTCCTCGTCGGAACACATGCATGCATTCATCCATGCATC
AATATTGAAAGACAATTCCAATCTGAAAAATTAGCGCGCGTGTATATTAG
TAGTCATCTAACTGCCATCAAATTCCACTCTAAAACGGGATTACCCACTT
CGAGCCCGGGGTTAGCTTGCCAACAAGAGGGTGGGTCGGGGCACACCTCT
GTCGCCTGCCGCGCAGAGGCTGCTGGTATTCCGCCGGGTCTTCGATCAGT
ACAATAGTTGTTCTTGTTTCTTTACGCGGGAGCACATCGATCGTCAATCT
CTATGGTCTTTGTCGGCTCCTTCAACCATTCTTGGCCATCTATAATGATG
AATGATGGGTAATCGATTCTCTACAGTACTTCTACTATTGATGTACTGTT
ACTATTTTTTCAAGCGCGACGGCATAATAAAATTACTGTTGACTTTTCGT
CGGAACGCACCAATCCACTGTATGTACAGCAGTTTATCTCCGATCTCGAA
GTGTTGGAGCGAATAGTTGCCTACATGCCATAAAAATGAAGCCCCGCTGT
CCAATGTACAGTGCATACATCATTTCCAGCTTCGAGGCCAGCCAAAGCCT
TCCAACGAGAGGTTTAGGGCACACCTCTGCCATGTGCTCCGCGTTTAGAA
TATTCGGTCGCGTTTCGGCGGAAACATTTTTTTTTTGTTCTTGTTATTCG
CGCGCGCATGCTGTAGACTATTTTTGTCGGTACTTGCACCATGATTGACA
TCGGCTTTACGGTTCTCTACTGTTCTCGGTGTATCAGCACACGAGTGGGC
ATCTTCTTCGCTTTGAAGTTTTTAACCAGGATGAATGGTCGTGGCCGTGG
TTTCAACTGGGATGAGTGGCCGTGTCGTGCTGGTGATGTGCTGTACAGCA
GCGTACTGTAGGGGCGTCGAATTTCTTTTCTTCAGCGTGGCATCACAGCA
GTAGGGAGCTTGCGTTGTGTGACTTACGTATGTACAAGTTGCCTTATAAC
TCTTTTGGCACACCTCATCGTCATCTGTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1336:1795..6324-

>mRNA_Ecto-sp13_S_contig1336.2685.1 ID=mRNA_Ecto-sp13_S_contig1336.2685.1|Name=mRNA_Ecto-sp13_S_contig1336.2685.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=552bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1336:1795..6324- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTCGCCAAACCCGCCAAGCCTCCAGCCCCGCTACCAACCCATCGCC
CTCCACCGCTGGATCCTTTCCGCCGGCTGCTTCTACGGCTGCTCCTACCC
CGCCGCCCGCGCGCGGAGCCGGCTCATCTGCGAGTGCTGGCTCATCTGCC
GGCTCGCCCGAACAAGTCCCGGCCGACCGCGAGCTGCAATACCTCTGCCC
ACGCCCCGGTTGCAACACCAACCTCTCCTTCAAGGAAAATATCCGCAAAG
ACAGGGCCGACTACCCCGCCTGCAGGAACTTTAGCGCCGGCACCTGCGCG
TGGACCGGCCTTTATTTGATCAAGTACCTCGGAAAGGTCTCCTGGCTCTG
CGCCTCCGAGTTCGAGGTCGGCGAAGTGGTGTGGGCATACACCATCCCAG
ACGTGGAACGCCCGGCGTGCTATATTAACTGGTGCCTCAACGCCGAGACC
TGCATCGTCCTCAAGGAGGTCGGCGTCCCCGTCAACGTTAGGCTGGCCGG
CGAGGACGACGTTGGCAAGCGCTGCCATGACTGCAAACGTGCCCGACCAT
AG
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