mRNA_Ecto-sp13_S_contig13358.2683.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13358.2683.1
Unique NamemRNA_Ecto-sp13_S_contig13358.2683.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13358.2683.1 vs. uniprot
Match: D7G2J2_ECTSI (PPIase cyclophilin-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2J2_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 3.910e-29
Identity = 55/68 (80.88%), Postives = 58/68 (85.29%), Query Frame = 3
Query:    3 YGPTFADESFELKHDQPGLLSMANSGRDSNNSQFFITFGPLPWLDSKHVVFGKVL*YCVYVRLCREAG 206
            YGPTF DESF+LKHDQPGLLSMANSGRDSNNSQFFITFGPLPWLDSKHVVFGKV+     VR   + G
Sbjct:  181 YGPTFVDESFQLKHDQPGLLSMANSGRDSNNSQFFITFGPLPWLDSKHVVFGKVVEGMEVVRKIEDCG 248          
BLAST of mRNA_Ecto-sp13_S_contig13358.2683.1 vs. uniprot
Match: A0A109UY11_9SACH (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Eremothecium sinecaudum TaxID=45286 RepID=A0A109UY11_9SACH)

HSP 1 Score: 96.7 bits (239), Expect = 3.080e-22
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = 3
Query:    3 YGPTFADESFELKHDQPGLLSMANSGRDSNNSQFFITFGPLPWLDSKHVVFGKVL 167
            YGPTFADESFELKHD+PG LSMAN G+D+N SQFFIT  P PWLD +HVVFG+V+
Sbjct:  102 YGPTFADESFELKHDKPGRLSMANRGKDTNGSQFFITTVPTPWLDGRHVVFGEVI 156          
BLAST of mRNA_Ecto-sp13_S_contig13358.2683.1 vs. uniprot
Match: A0A1J1H4A2_PLARL (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Plasmodium relictum TaxID=85471 RepID=A0A1J1H4A2_PLARL)

HSP 1 Score: 94.0 bits (232), Expect = 1.790e-21
Identity = 41/55 (74.55%), Postives = 49/55 (89.09%), Query Frame = 3
Query:    3 YGPTFADESFELKHDQPGLLSMANSGRDSNNSQFFITFGPLPWLDSKHVVFGKVL 167
            YG +FADE+F+LKHDQPGLLSMAN+G ++N+SQFFIT  P PWLD KHVVFGKV+
Sbjct:   86 YGRSFADENFQLKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVV 140          
BLAST of mRNA_Ecto-sp13_S_contig13358.2683.1 vs. uniprot
Match: A0A1G4JE59_9SACH (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Lachancea sp. CBS 6924 TaxID=433476 RepID=A0A1G4JE59_9SACH)

HSP 1 Score: 92.8 bits (229), Expect = 1.140e-20
Identity = 42/55 (76.36%), Postives = 46/55 (83.64%), Query Frame = 3
Query:    3 YGPTFADESFELKHDQPGLLSMANSGRDSNNSQFFITFGPLPWLDSKHVVFGKVL 167
            YG TF DESFELKHD+PG LSMAN GR++N SQFFIT  P PWLD KHVVFG+VL
Sbjct:  103 YGSTFEDESFELKHDRPGRLSMANRGRNTNGSQFFITTVPTPWLDGKHVVFGEVL 157          
BLAST of mRNA_Ecto-sp13_S_contig13358.2683.1 vs. uniprot
Match: PPI2_SYNY3 (Peptidyl-prolyl cis-trans isomerase slr1251 n=9 Tax=Synechocystis TaxID=1142 RepID=PPI2_SYNY3)

HSP 1 Score: 91.7 bits (226), Expect = 1.420e-20
Identity = 39/55 (70.91%), Postives = 48/55 (87.27%), Query Frame = 3
Query:    3 YGPTFADESFELKHDQPGLLSMANSGRDSNNSQFFITFGPLPWLDSKHVVFGKVL 167
            YG  FADE+F+LKHD+PGLLSMAN+G ++N SQFF+TF P PWLD KHVVFG+V+
Sbjct:   85 YGEKFADENFQLKHDRPGLLSMANAGPNTNGSQFFLTFVPCPWLDGKHVVFGEVV 139          
BLAST of mRNA_Ecto-sp13_S_contig13358.2683.1 vs. uniprot
Match: A0A2A9NRP4_9AGAR (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Amanita thiersii Skay4041 TaxID=703135 RepID=A0A2A9NRP4_9AGAR)

HSP 1 Score: 92.4 bits (228), Expect = 1.870e-20
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 3
Query:    3 YGPTFADESFELKHDQPGLLSMANSGRDSNNSQFFITFGPLPWLDSKHVVFGKVL 167
            YG  FADE+FEL HDQPGLLSMANSG+D+N SQFF+T  P  WL+ KHVVFGKVL
Sbjct:  112 YGGIFADENFELNHDQPGLLSMANSGKDTNGSQFFVTTAPASWLNRKHVVFGKVL 166          
BLAST of mRNA_Ecto-sp13_S_contig13358.2683.1 vs. uniprot
Match: A0A1A8VVK1_PLAMA (Peptidyl-prolyl cis-trans isomerase n=32 Tax=Plasmodium TaxID=5820 RepID=A0A1A8VVK1_PLAMA)

HSP 1 Score: 91.3 bits (225), Expect = 1.950e-20
Identity = 39/55 (70.91%), Postives = 48/55 (87.27%), Query Frame = 3
Query:    3 YGPTFADESFELKHDQPGLLSMANSGRDSNNSQFFITFGPLPWLDSKHVVFGKVL 167
            YG +F DE+F++KHDQPGLLSMAN+G ++N+SQFFIT  P PWLD KHVVFGKV+
Sbjct:   85 YGRSFTDENFKMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVV 139          
BLAST of mRNA_Ecto-sp13_S_contig13358.2683.1 vs. uniprot
Match: A5KDH9_PLAVS (Peptidyl-prolyl cis-trans isomerase n=6 Tax=Plasmodium vivax TaxID=5855 RepID=A5KDH9_PLAVS)

HSP 1 Score: 92.4 bits (228), Expect = 2.040e-20
Identity = 42/71 (59.15%), Postives = 53/71 (74.65%), Query Frame = 3
Query:    3 YGPTFADESFELKHDQPGLLSMANSGRDSNNSQFFITFGPLPWLDSKHVVFGKVL*YCVYVRLCREAGGRA 215
            YG +F DE+F++KHDQPGLLSMAN+G ++N+SQFFIT  P PWLD KHVVFGKV+     VR   + G  +
Sbjct:   85 YGRSFTDENFKMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVRYMEKEGANS 155          
BLAST of mRNA_Ecto-sp13_S_contig13358.2683.1 vs. uniprot
Match: D6AXE0_9ACTN (Peptidyl-prolyl cis-trans isomerase n=36 Tax=Streptomyces TaxID=1883 RepID=D6AXE0_9ACTN)

HSP 1 Score: 90.9 bits (224), Expect = 2.820e-20
Identity = 48/83 (57.83%), Postives = 55/83 (66.27%), Query Frame = 3
Query:    3 YGPTFADESFELKHDQPGLLSMANSGRDSNNSQFFITFGPLPWLDSKHVVFGKVL*YCVYVRLCREAGGRACEYS-TPTCSPC 248
            YG  FADE+F+LKHD PG+LSMAN+G  SN SQFFI   P PWLD KHVVFGKVL     V+     G R+ + S T T S C
Sbjct:   86 YGEKFADENFQLKHDTPGILSMANAGPHSNGSQFFICTEPTPWLDGKHVVFGKVLDGMDTVKAIESHGSRSGKTSATLTISDC 168          
BLAST of mRNA_Ecto-sp13_S_contig13358.2683.1 vs. uniprot
Match: A0A453BL61_AEGTS (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453BL61_AEGTS)

HSP 1 Score: 89.0 bits (219), Expect = 3.080e-20
Identity = 45/79 (56.96%), Postives = 53/79 (67.09%), Query Frame = 3
Query:    3 YGPTFADESFELKHDQPGLLSMANSGRDSNNSQFFITFGPLPWLDSKHVVFGKVL*YCVYVRLCREAGGRACEYSTPTC 239
            YG  F DE+F+LKHDQPG+LSMANSG ++N SQFFITF  +P LD KHVVFGKVL     ++     G    E   PTC
Sbjct:    8 YGGKFPDENFKLKHDQPGILSMANSGENTNGSQFFITFKAVPHLDGKHVVFGKVLNGKALLKKLEALGS---ESGKPTC 83          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13358.2683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2J2_ECTSI3.910e-2980.88PPIase cyclophilin-type domain-containing protein ... [more]
A0A109UY11_9SACH3.080e-2276.36Peptidyl-prolyl cis-trans isomerase n=1 Tax=Eremot... [more]
A0A1J1H4A2_PLARL1.790e-2174.55Peptidyl-prolyl cis-trans isomerase n=1 Tax=Plasmo... [more]
A0A1G4JE59_9SACH1.140e-2076.36Peptidyl-prolyl cis-trans isomerase n=1 Tax=Lachan... [more]
PPI2_SYNY31.420e-2070.91Peptidyl-prolyl cis-trans isomerase slr1251 n=9 Ta... [more]
A0A2A9NRP4_9AGAR1.870e-2074.55Peptidyl-prolyl cis-trans isomerase n=1 Tax=Amanit... [more]
A0A1A8VVK1_PLAMA1.950e-2070.91Peptidyl-prolyl cis-trans isomerase n=32 Tax=Plasm... [more]
A5KDH9_PLAVS2.040e-2059.15Peptidyl-prolyl cis-trans isomerase n=6 Tax=Plasmo... [more]
D6AXE0_9ACTN2.820e-2057.83Peptidyl-prolyl cis-trans isomerase n=36 Tax=Strep... [more]
A0A453BL61_AEGTS3.080e-2056.96Peptidyl-prolyl cis-trans isomerase n=1 Tax=Aegilo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13358contigEcto-sp13_S_contig13358:306..1119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size439
Hectar predicted targeting categoryother localisation
Exons2
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462713.4749894-CDS-Ecto-sp13_S_contig13358:305..3831681462713.4749894-CDS-Ecto-sp13_S_contig13358:305..383Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13358 306..383 +
1681462713.483973-CDS-Ecto-sp13_S_contig13358:759..10051681462713.483973-CDS-Ecto-sp13_S_contig13358:759..1005Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13358 760..1005 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462713.492285-UTR-Ecto-sp13_S_contig13358:1005..11191681462713.492285-UTR-Ecto-sp13_S_contig13358:1005..1119Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13358 1006..1119 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13358.2683.1prot_Ecto-sp13_S_contig13358.2683.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13358 306..1005 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13358.2683.1

>prot_Ecto-sp13_S_contig13358.2683.1 ID=prot_Ecto-sp13_S_contig13358.2683.1|Name=mRNA_Ecto-sp13_S_contig13358.2683.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
STGQRSRTKALNLSTTSLVCSPWLIQVETATTLNSSSPSAHFLGWTQSTS
CLARYYNTVCTYDCAGKQEAVLANIRHRLVALACPPNCCPRSLQHSMPED
ATTPHLP*
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mRNA from alignment at Ecto-sp13_S_contig13358:306..1119+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13358.2683.1 ID=mRNA_Ecto-sp13_S_contig13358.2683.1|Name=mRNA_Ecto-sp13_S_contig13358.2683.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=814bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13358:306..1119+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTACGGGCCAACGTTCGCGGACGAAAGCTTTGAACTTAAGCACGACCAG CCTGGTCTGCTCTCCATGGCTAATTCAGGCAAGGGAATTTCGTTCGGTGT TATCGAGGGGGGGAAAGCGGTGTGCTCGGTAAATTTTGTGCGTCAAGGAT GCTTTATCTTGTTGTTCGACAATCCGCTGCTCGACCTCGAAGTTCCAACT CTTGGTGCGAATGCCGATTTGCGCCATCTTCAGACCCGTTTCGTTCAAGA TACCGTGATCTGCGGCTCTCGGTCTGCCTCGGTCTGCTTGTCTGGTCTGT CTGTCTGTCTGTCTGTCTCATTTCACAGTGCTCCGTGCCGCCGTCTCCTC CCCATTTCTCCGTGCATGTTTCGCTTTCTCTCTCTCTCTCTCTCTCTCGC TCTTTCGCTGCCTTTGTGTGTGGGTCTCTCTCTCTGCCCACTTTTTCTCA TCAGGTCGAGACAGCAACAACTCTCAATTCTTCATCACCTTCGGCCCACT TCCTTGGCTGGACTCAAAGCACGTCGTGTTTGGCAAGGTACTATAATACT GTGTGTACGTACGACTGTGCCGGGAAGCAGGAGGCCGTGCTTGCGAATAT TCGACACCGACTTGTAGCCCTTGCCTGTCCGCCCAATTGTTGCCCGCGCA GTCTGCAGCATTCGATGCCTGAGGATGCGACAACTCCGCATTTGCCATGA CATCACGGACGTGTCAGACATCAACGCGTTTGAGAAGAGTCCCTCGAGTT GCCGAGTCGCTCAACAGAATAAAAAACGCGGTTTATCATTTGTTTCTCTA TTTTGTTGTCGCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13358:306..1119+

>mRNA_Ecto-sp13_S_contig13358.2683.1 ID=mRNA_Ecto-sp13_S_contig13358.2683.1|Name=mRNA_Ecto-sp13_S_contig13358.2683.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13358:306..1119+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTACGGGCCAACGTTCGCGGACGAAAGCTTTGAACTTAAGCACGACCAG
CCTGGTCTGCTCTCCATGGCTAATTCAGGTCGAGACAGCAACAACTCTCA
ATTCTTCATCACCTTCGGCCCACTTCCTTGGCTGGACTCAAAGCACGTCG
TGTTTGGCAAGGTACTATAATACTGTGTGTACGTACGACTGTGCCGGGAA
GCAGGAGGCCGTGCTTGCGAATATTCGACACCGACTTGTAGCCCTTGCCT
GTCCGCCCAATTGTTGCCCGCGCAGTCTGCAGCATTCGATGCCTGAGGAT
GCGACAACTCCGCATTTGCCATGA
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