mRNA_Ecto-sp13_S_contig13346.2675.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13346.2675.1
Unique NamemRNA_Ecto-sp13_S_contig13346.2675.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13346.2675.1 vs. uniprot
Match: D7FN81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN81_ECTSI)

HSP 1 Score: 513 bits (1322), Expect = 4.830e-163
Identity = 310/340 (91.18%), Postives = 313/340 (92.06%), Query Frame = 1
Query:   43 HPARDVGGAAAGGGAVHAPLASGTASSGKXXXXXXXXXAETFDAGWLYSRCMQFHAQQGSRGLPPVDLASSVLEVLSRSTDPGELQGSLFDLLGEAGLELMMELIDKAPALGRIDARDLFAIADAHGGXXXXXXXXXX---SAGIGGFDXXXXXXGMAEMGLGGDAATGRSGPTISRQIKIWSTAEKEAEKLRRKDLKKAAKRGGGVAGGQGQQXXXXXXXXXXXGLDWLQSVGFEEEYLKQERLLGLQAGGTGGGESEEAMMLAGLAPEGTREWHDRRSGMPAGATKTVVAGQYEQVHIPPPKLNRNKDGEGLVPITDLEPWAQMAFKGTKRLNPMQSK 1053
            HP RDVGG AA GGAVHAPL SGT SS  XXXXXXXXXAE FDAGWLYSRCMQFHAQQGSRGLPPVDLASSVLE LSRSTDPGELQG LFD+LGE+GLELMMELIDKAPALGRIDARDLFAIADAHGGXXXXXXXXXX   SAGIGGF XXXXXX           ATGRSGPTISRQIKIWST+EKEAEKLRRKDLKKAAKRGG VAGGQGQQ XXXXXXXXXXGLDWLQSVGFEEEYLKQERLLGLQAGGTGGGESEEAMMLAGLAPEGTREWHDRRSGMPAGATKTVVAGQYEQVHIPPPKLNRNKDGEGLVPITDLEPWAQMAFKGTKRLNPMQSK
Sbjct:  276 HPVRDVGGGAAEGGAVHAPLTSGTGSSXXXXXXXXXXXAEAFDAGWLYSRCMQFHAQQGSRGLPPVDLASSVLETLSRSTDPGELQGPLFDILGESGLELMMELIDKAPALGRIDARDLFAIADAHGGXXXXXXXXXXXXXSAGIGGFXXXXXXXXXXXXXXXXXDATGRSGPTISRQIKIWSTSEKEAEKLRRKDLKKAAKRGGVVAGGQGQQDXXXXXXXXXXGLDWLQSVGFEEEYLKQERLLGLQAGGTGGGESEEAMMLAGLAPEGTREWHDRRSGMPAGATKTVVAGQYEQVHIPPPKLNRNKDGEGLVPITDLEPWAQMAFKGTKRLNPMQSK 615          
BLAST of mRNA_Ecto-sp13_S_contig13346.2675.1 vs. uniprot
Match: A0A7S3M5Q6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M5Q6_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.560e-14
Identity = 97/300 (32.33%), Postives = 137/300 (45.67%), Query Frame = 1
Query:  178 WLYSRCMQFHAQQGSRGLPPVDLASSVLEVLSRST-DPGELQGSLFDLLGEAGLELMMELI---DKAPALGRIDARDLFAIADAHGGXXXXXXXXXXSAGIGGFDXXXXXXGMAEMGLGGDAATGRSGPTISRQIKIWSTAEKE---AEKLRRKDLKKAAKRGGGVAGGQGQQXXXXXXXXXXXGLDWLQSVGFEEEYLKQERLLGLQAGGTGGGESEEAMMLAGLAPEGTREWHDRRSGMPAGATKTVVAGQYEQVHIPPPKLNRNKDGEGLVPI-TDLEPWAQMAFKGTKRLNPMQSK 1053
            WL   C    A           LA  +++V  ++  D G LQ SLFDL+GEAG ELM+EL+   ++   LG +      ++A+    XXXXXXXXXX                                     ++    A +E   A + R+++LK A ++   +      Q             DWLQ +GF +EYL  ER LGLQ         +    +  LA EG+ E H++R G+PAG  + V  G YE+V+IP      +   + L+ I T LEPWAQ AF GTK LN +QS+
Sbjct:  245 WLLQLCTAHVASSPDSVFDGPQLADEIIKVADQAAGDEGLLQMSLFDLIGEAGFELMLELVQHRERLHGLGSVKTTTTTSVAEPVXXXXXXXXXXXXXXXX-----------XXXXXXXXXXXDDWEAMDYLEGMEYAQNAPEEHLSANQRRKRELKAAREQERLI------QEYGHPQAQNNNNTDWLQQLGFGDEYLMAERALGLQKDRAPHAIPDN--WVNNLAAEGSTEIHEKR-GLPAGTERFVHHG-YEEVNIPAAVRPDSVKEQPLIDIATSLEPWAQKAFLGTKTLNTIQSR 523          
BLAST of mRNA_Ecto-sp13_S_contig13346.2675.1 vs. uniprot
Match: A0A7R9U1M1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1M1_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 4.900e-14
Identity = 89/303 (29.37%), Postives = 133/303 (43.89%), Query Frame = 1
Query:  172 AGWLYSRCMQFHAQQGSRGLPPVDLASSVLEVLSRSTDPGELQGSLFDLLGEAGLELMMELIDKAPALGRIDARDLFAIADAHGGXXXXXXXXXXSAGIGGFDXXXXXXGMAEMGLG-GDAATGRSGPTISRQIKIWSTAEKEAEKLRR--KDLKKAAKRGGGVAGGQGQQXXXXXXXXXXXGLDWLQSVGFEEEYLKQER----LLGLQAGGTGGGESEEAMM---LAGLAPEGTREWHDRRSGMPAGATKTVVAGQYEQVHIPPPKLNRNKDGEGLVPITDLEPWAQMAFKGTKRLNPMQS 1050
            A WL  +C + H   G   L P  LA +V+E  ++S D   LQ  LFDLLG+A  +L+ME++ +A  LG +   DL  +    G           +   GG        G+  M      AATGR       + +  +  E E+++     +DL+K  +R       +  +             D  QS+  E+     E     +L L+A      E+E A M   LAG+     RE+H   SG  +G  +    G YE+V +P P+         L+PI +L  WAQ+ F+G + LNPMQS
Sbjct:  173 AAWLLDKC-RGHVDAGRSVLDPRQLAEAVVEC-AKSGDEATLQAGLFDLLGDADFDLLMEMVARATELGSLSPADLDHVGMQGG---------RKAGAAGGASREIEGGGLVTMSESIPTAATGRESQRSKGRKRNAARDEDESDRKLETMEDLQKLEQR----KEQEFAEHVVKTAVDVGIDADVAQSMTTEDLTAVLEAQGVDVLTLEAA-----EAESAAMNDPLAGVP----REYHAATSGYTSGTVRRYFPG-YEEVIMPAPQTRPRPTNGRLIPIAELPRWAQLPFRGMETLNPMQS 450          
BLAST of mRNA_Ecto-sp13_S_contig13346.2675.1 vs. uniprot
Match: A0A2R6WZK4_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WZK4_MARPO)

HSP 1 Score: 70.1 bits (170), Expect = 2.420e-9
Identity = 76/296 (25.68%), Postives = 119/296 (40.20%), Query Frame = 1
Query:  169 DAGWLYSRCMQFHAQQGSRGLPPVDLASSVLEVLSRSTDPGELQGSLFDLLGEAGLELMMELIDKAPALGRIDARDLFAIADAHGGXXXXXXXXXXSAGIGGFDXXXXXXGMAEMGLGGDAATGRSGPTISRQIKIWSTAEKEAEKLRRKDLKKAAKRGGGVAGGQGQQXXXXXXXXXXXGLDWLQSVG-FEEEYLKQERLLGLQAGGTGGGESEEAMMLAGLAPEGTREWHDRRSGMPAGATKTVVAGQYEQVHIPPPKLNRNKDGEGLVPITDLEPWAQMAFKGTKRLNPMQSK 1053
            D  W    C +             +LA +V  VL       E+ G LFDL+G+A  + + EL+     L  +  + L A+                                A M            P+   Q+ + + ++++ +KLRRK+ K+ A+RG   AGG+G              L+WL  VG F       ER +G      G G  E+   ++G A             +P G+ +    G YE+V +P       K  E LVPI++L+ +AQ+AF+G K LN +QS+
Sbjct:   38 DLRWYKRMCYKAAEAGAGAQFSGDELALAVARVLESDRSGDEIAGDLFDLIGDAWFDFIQELLQHRKELVDLIQKGLTALRSEKAPAV-----------------------QARM------------PSYGTQVSVQTGSDRQIDKLRRKEEKRQARRGF-AAGGEGDSD-----------LEWLAGVGGFAALIDSGERNVGAINSLIGKG--EDVYGISGTA-------------LPTGSVRKSFKG-YEEVKVPATPGATIKPDERLVPISELDDFAQLAFEGIKTLNRIQSR 270          
BLAST of mRNA_Ecto-sp13_S_contig13346.2675.1 vs. uniprot
Match: A0A0L0DG16_THETB (Activating signal cointegrator 1 complex subunit 3 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DG16_THETB)

HSP 1 Score: 70.1 bits (170), Expect = 2.460e-9
Identity = 85/309 (27.51%), Postives = 116/309 (37.54%), Query Frame = 1
Query:  169 DAGWLYSRCMQFHAQQGSRGLPPVDLASSVLEVLSRSTDPGELQGSLFDLLGEAGLELMMELIDKAPAL---------------GRIDARDLFAIADAHGGXXXXXXXXXXSAGIGGFDXXXXXXGMAEMGLGGDAATGRSGPTISRQIKIWSTAEKEAEKLRRKDLKKAAKRGGGVAGGQGQQXXXXXXXXXXXGLDWLQSVGFEEEYLKQERLLGLQAGGTGGGESEEAMMLAGLAPEGTREWHDRRSGMPAGATKTVVAGQYEQVHIPPPKLNRNKDGEGLVPITDLEPWAQMAFKGTKRLNPMQS 1050
            DA WL  +C +  A     G    +LA +V EVL+++ D   LQ  LF+LLG  GL+L+ ELI     L                R+DA D    ADA              AG+ G        G     +   AA                 AE  A  L             G +GG                   + S  +  E ++  R   L A       S     L G AP           GMP+ AT+     +Y +VH+P  + +    GE L+PI++ EPWA++AFKG K LN +QS
Sbjct:  338 DAAWLREQCARV-AAANDVGTSGDELAMAVHEVLAKNNDATALQSHLFELLGMNGLDLIPELIGSRDELVANWLSMEESDAALAARLDAMDAAVAADA---------AVFDLAGLTGGSNNPHGAGFT---ITSAAAKAXXXXXXXXXXXXTRQAESNANSL-------------GGSGG-------------------VSSKAYTAEAIEARRQAKLAAARARPAISGSGS-LVGAAPV--------NRGMPSNATEEKTK-EYRRVHVPAARASPPGAGERLIPISEFEPWARLAFKGYKSLNRIQS 591          
BLAST of mRNA_Ecto-sp13_S_contig13346.2675.1 vs. uniprot
Match: A0A1Y1IBL7_KLENI (DEAD/DEAH box helicase domain containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IBL7_KLENI)

HSP 1 Score: 68.9 bits (167), Expect = 5.820e-9
Identity = 72/292 (24.66%), Postives = 113/292 (38.70%), Query Frame = 1
Query:  178 WLYSRCMQFHAQQGSRGLPPVDLASSVLEVLSRSTDPGELQGSLFDLLGEAGLELMMELIDKAPALGRIDARDLFAIADAHGGXXXXXXXXXXSAGIGGFDXXXXXXGMAEMGLGGDAATGRSGPTISRQIKIWSTAEKEAEKLRRKDLKKAAKRGGGVAGGQGQQXXXXXXXXXXXGLDWLQSVGFEEEYLKQERLLGLQAGGTGGGESEEAMMLAGLAPEGTREWHDRRSGMPAGATKTVVAGQYEQVHIPPPKLNRNKDGEGLVPITDLEPWAQMAFKGTKRLNPMQSK 1053
            WL  +C    A  G+      +LA +VL +L       E+ G L DLLG  G+E++ EL+ +  A+     + L A+                       D          M            P+   Q+ + + +++  +KLRRK+ K+ A+   G A G+G+              DWL   G     L     +GL A G           L G   +G          +P G  +    G YE+VH+P          E LV I +++ +AQ+AF+G   LN +QS+
Sbjct:  276 WLQQQCQAASALGGAGAFRGDELALNVLRLLDSEGSGDEVAGDLLDLLGNGGVEIIEELLQRRKAITDAAKKALSALKSV--------------------DDEGKAQQQPRM------------PSYGTQVSVHTDSDRVLDKLRRKEEKRQAR--AGHASGKGESDW-----------DWLAGAGGFVALLD----VGLGARGV-------IDSLVGRGEDGFGSLGVNARALPKGTMRKTFKG-YEEVHVPATPTAEMLPQERLVKIEEMDEFAQLAFEGYTTLNRIQSR 510          
BLAST of mRNA_Ecto-sp13_S_contig13346.2675.1 vs. uniprot
Match: A0A177V2J1_9BASI (Uncharacterized protein n=4 Tax=Tilletia TaxID=13289 RepID=A0A177V2J1_9BASI)

HSP 1 Score: 60.8 bits (146), Expect = 2.330e-6
Identity = 33/59 (55.93%), Postives = 39/59 (66.10%), Query Frame = 1
Query:  877 MPAGATKTVVAGQYEQVHIPPPKLNRNKDGEGLVPITDLEPWAQMAFKGTKRLNPMQSK 1053
            +P G+ K    G YE++HIP P   +    E LVPITDL PWAQ AF GT RLNP+QSK
Sbjct:  464 LPEGSFKRTKKG-YEEIHIPAPVKAQIPQSE-LVPITDLPPWAQPAFGGTARLNPIQSK 520          
BLAST of mRNA_Ecto-sp13_S_contig13346.2675.1 vs. uniprot
Match: UPI001EE5E0DB (LOW QUALITY PROTEIN: activating signal cointegrator 1 complex subunit 3-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE5E0DB)

HSP 1 Score: 58.5 bits (140), Expect = 1.230e-5
Identity = 73/313 (23.32%), Postives = 117/313 (37.38%), Query Frame = 1
Query:  169 DAGWLYSRCMQFHAQQGSR--GLPPVDLASSVLEVLSRSTDPGELQGSLFDLLGEAGLELMMELIDKAPALGRIDARDLFAIADAHGGXXXXXXXXXXSAGIGGFDXXXXXXGMAEMGLGGDAATGRSGPTISRQIKIWSTAEKEAEKLRRKDLKKAAKRGGGVAGGQGQQXXXXXXXXXXXGLDWLQSVGFEEEYLKQERLLGLQAGGTGGGESEEAMMLAGLAPEGTREWHD---------RRSGMPAGATKTVVAG--------QYEQVHIPPPKLNRNKDGEGLVPITDLEPWAQMAFKGTKRLNPMQS 1050
            D+ WL     ++ +  G    GL   DL++++ EVL  +    ELQ  LF+LLG    E++  L+     L +    D    A                              +A++         R  PT   Q+ I S  EK+  KL R++ KK +KR G     +G++                    F    ++ +R   LQ        +    +  G +    RE +          R+S    G  K V+           YE+V +PP +      G+ LVP+ +L+   Q+AF+G K LN +QS
Sbjct:  225 DSSWLLEEVRKYFSSSGETDIGLSLEDLSTTIFEVLCSTKTDEELQNELFELLGFDRFEMIQSLLSNRSRLMKTLVADTNRAA------------------------------IAQVQAQRKKEVER--PTYGCQVTIQSEEEKQLMKLIRREEKKLSKRDGKKVEEEGKKA-------------------FNPMEMRAQREAALQV-------ASNRPLFTGSSKSYQRERYPFVFDSNEEARQSSAYVGGNKMVLPQGFNRNDNKDYEEVSVPPNESAPIDVGQRLVPVNELDEIGQLAFRGMKNLNRIQS 479          
BLAST of mRNA_Ecto-sp13_S_contig13346.2675.1 vs. uniprot
Match: K3WN69_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WN69_GLOUD)

HSP 1 Score: 58.2 bits (139), Expect = 1.700e-5
Identity = 79/323 (24.46%), Postives = 122/323 (37.77%), Query Frame = 1
Query:  109 GTASSGKXXXXXXXXXAETFDAGWLYSRCMQFHAQQGSRGLPPVDLASSVLE-VLSRSTDPGELQGSLFDLLGEAGLELMMELIDKAPALGRIDARDLFAIADAHGGXXXXXXXXXXSAGIGGFDXXXXXXGMAEMGLGGDAATGRSG-PTISRQIKIWSTAEKEAEKLRRKDLKKAAKRGGGVAGGQGQQXXXXXXXXXXXGLDWLQSVGFEEEYLKQERLLG---LQAGGTGGGESEEAMMLAGLAPEGTREWHDRRSGM---PAGATKTVVAGQYEQVHIPPPKLNRNKDGEGLVPITDLEPWAQMAFKGTKRLNPMQSK 1053
            G ++SGK         AE      L   C +  +         ++LA  +L+ V    +DP  +Q  LF L+G  G++L+   I     L +   R      +                               E+     AA G S  P ++    I + +E+   K +RK  +KA  +GGG       +             +WL++ G++ E L+ +R      ++   T   + E   +  G    G        +GM   PA   +T   G YE V IP          E LVPI+DLE +AQ AF+G   LN +QSK
Sbjct:  124 GASASGKSKANITMETAEK-----LLQECAKHTSSSAGGFFTTMELAEMILQTVQDNPSDPDMVQTQLFGLVGVEGMDLIAFAIQNQVELAKNVKRQTLQDVEK----------------------------QQELAEKFAAAGGTSTRPAVASSFSIQTASEQLFLKQQRKANRKARAQGGGARDDSDDEQ------------NWLEAAGYDPEVLRLQREFAQEEMRNQSTSLLQREFGQLQGGYDTSGAAG-QLTSAGMLTLPASTKRTYFKG-YEHVFIPAHAKKSLDQNEKLVPISDLEDFAQTAFRGMTHLNRLQSK 399          
BLAST of mRNA_Ecto-sp13_S_contig13346.2675.1 vs. uniprot
Match: A0A7S4JN37_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JN37_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.230e-5
Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 1
Query:  808 EEAMMLAGLAPEGTREWHDRRSGMPAGATKTVVAGQYEQVHIPPPKLNRNKDGEGLVPITDLEPWAQMAFKGTKRLNPMQS 1050
            E   M+AGLAP GT+E+H++R G+P G  +    G YE V IP   L+ ++    +     + P A+ AF+GT  LNPMQS
Sbjct:  130 EMQQMMAGLAPSGTKEYHEKR-GLPPGTEREYGDG-YEMVTIPAKVLDESQLPSRIKLKDAMGPSARKAFRGTDSLNPMQS 208          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13346.2675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FN81_ECTSI4.830e-16391.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3M5Q6_9STRA2.560e-1432.33Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
A0A7R9U1M1_9STRA4.900e-1429.37Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A2R6WZK4_MARPO2.420e-925.68Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A0A0L0DG16_THETB2.460e-927.51Activating signal cointegrator 1 complex subunit 3... [more]
A0A1Y1IBL7_KLENI5.820e-924.66DEAD/DEAH box helicase domain containing protein n... [more]
A0A177V2J1_9BASI2.330e-655.93Uncharacterized protein n=4 Tax=Tilletia TaxID=132... [more]
UPI001EE5E0DB1.230e-523.32LOW QUALITY PROTEIN: activating signal cointegrato... [more]
K3WN69_GLOUD1.700e-524.46Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S4JN37_9STRA2.230e-541.98Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13346contigEcto-sp13_S_contig13346:3..3298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score514.2
Seed ortholog evalue4.7e-143
Seed eggNOG ortholog2880.D7FN81
Model size1057
KEGG koko:K12854,ko:K18663
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.response to ionizing radiation
EggNOG OGsCOG1204@1,KOG0952@2759
EC3.6.4.12,3.6.4.13
Cds size1056
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13346.2675.1prot_Ecto-sp13_S_contig13346.2675.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13346 3..3297 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462713.0446007-CDS-Ecto-sp13_S_contig13346:2..1931681462713.0446007-CDS-Ecto-sp13_S_contig13346:2..193Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13346 3..193 +
1681462713.0551054-CDS-Ecto-sp13_S_contig13346:587..6961681462713.0551054-CDS-Ecto-sp13_S_contig13346:587..696Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13346 588..696 +
1681462713.0637736-CDS-Ecto-sp13_S_contig13346:1231..14731681462713.0637736-CDS-Ecto-sp13_S_contig13346:1231..1473Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13346 1232..1473 +
1681462713.0721085-CDS-Ecto-sp13_S_contig13346:1774..19911681462713.0721085-CDS-Ecto-sp13_S_contig13346:1774..1991Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13346 1775..1991 +
1681462713.0803366-CDS-Ecto-sp13_S_contig13346:2319..24841681462713.0803366-CDS-Ecto-sp13_S_contig13346:2319..2484Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13346 2320..2484 +
1681462713.088483-CDS-Ecto-sp13_S_contig13346:3165..32971681462713.088483-CDS-Ecto-sp13_S_contig13346:3165..3297Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13346 3166..3297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13346.2675.1

>prot_Ecto-sp13_S_contig13346.2675.1 ID=prot_Ecto-sp13_S_contig13346.2675.1|Name=mRNA_Ecto-sp13_S_contig13346.2675.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=352bp
RASSSSLGGEEESKHPARDVGGAAAGGGAVHAPLASGTASSGKSGAAGAA
AAAETFDAGWLYSRCMQFHAQQGSRGLPPVDLASSVLEVLSRSTDPGELQ
GSLFDLLGEAGLELMMELIDKAPALGRIDARDLFAIADAHGGGGGGGGGG
GGSAGIGGFDGGGLAAGMAEMGLGGDAATGRSGPTISRQIKIWSTAEKEA
EKLRRKDLKKAAKRGGGVAGGQGQQDGGAGGRDGGGGLDWLQSVGFEEEY
LKQERLLGLQAGGTGGGESEEAMMLAGLAPEGTREWHDRRSGMPAGATKT
VVAGQYEQVHIPPPKLNRNKDGEGLVPITDLEPWAQMAFKGTKRLNPMQS
KA
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mRNA from alignment at Ecto-sp13_S_contig13346:3..3298+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13346.2675.1 ID=mRNA_Ecto-sp13_S_contig13346.2675.1|Name=mRNA_Ecto-sp13_S_contig13346.2675.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3296bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13346:3..3298+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGCATCTTCATCCTCGCTGGGCGGCGAGGAGGAATCGAAGCACCCTGC ACGGGACGTTGGTGGCGCTGCCGCTGGGGGAGGCGCTGTCCACGCACCTC TTGCTTCGGGTACCGCCTCCTCGGGAAAATCGGGCGCGGCGGGAGCGGCT GCGGCCGCAGAAACGTTTGACGCCGGGTGGCTCTATTCCAGGTGCAGTTT TCGCGCGTGTATTCGCCCCCACTTCTGATGAGATGCCTTGAATGCCCCCC ACCCCCCACCCCCCACCCCATTTTTCGAGAAACAAGTTAAACGGTTGCGA GGGTGGCAAAGACGACAAAACTAGCTCCCAGGAACAGAATGGTCTAACAG ATATCAACTGGCAGTGTTCTCCGAGGCTTCACACCGCCCCGCGAGTTGTC CACCTCCCTCGCCAAGAACGGGCGGCGGCTGGGGAGGCACGACGGGAACT CGCGCCGTCCTCCCTCCTCCTCAGGCTTCAAGGTGGTTACGTGTTTGGCT AGAAATGCAGCAACGTCCATTTCATTGCACATTTCCCCACCAACACTATG GGCCTGAGAACGCCTTCTCCCCTCCGTCCCTCCAGGTGCATGCAGTTTCA CGCCCAGCAAGGGAGTCGGGGGCTACCTCCCGTGGATCTAGCTTCTTCCG TCTTGGAAGTCCTCTCCCGAAGCACCGACCCCGGGGAGTTGCAGGTGAAA ATATGCAAAATGAACCTTTGAGGGAGCCCGGGGGATAGGTAGGTCGAGCA GCCCGGGAGCTGCGCTAGCTCGATAGTCAAGCGGCCGTTGCGTTTGGGCA GGCGACAGCTTGTAGAACAAGAGTATGTGTGAGCGACGCTTGTTTCTGCT AGGTCTCTTTGGTGCCTGGCGGGTCCACTCTCCACGAAGGTGTTCAAGGG GCCAAGGAGGGGGTGACGGCATTTCCGTGGGAGGGATGACAGCGTTTCGT ACTCACGAAGAGCTACCCAGACAGAGAGCTACTGTCGGCTAGGTTTTGTA GAGAGCAGGAAGTCGACGGCGCAGGCGGAAAGACGCCGAATGAGCCTTGC TTAAGAAGCAACGATACCCCCAAAGTATTGGGTTGTTTTTCTCCACCCGT GGTCCGAAATAGCAGCAGAACCCAAAGGTGTCGTCGCCAGAGTAGCAGCA GCCCCGCCCTGAAAGGGACACCAAGGGTCAGAACAAGCACTCAACAAGTC GGCACCCGTTGCGTCGTTTGGCTCCGCAGGGATCCCTGTTCGACCTATTG GGGGAGGCGGGCCTGGAGCTGATGATGGAACTCATCGACAAGGCGCCTGC GCTAGGTCGGATCGACGCCAGAGACTTGTTCGCGATCGCCGATGCCCACG GTGGTGGCGGCGGCGGGGGCGGCGGGGGCGGGGGCTCCGCAGGTATCGGC GGCTTTGACGGGGGAGGGCTGGCCGCGGGGATGGCGGAGATGGGTCTGGG CGGGGACGCCGCAACCGGCAGGTAGAAAACTCGTTTTGTGTTGAGGTACA ATCGTCGTGTTTGTCTTGGCGAGGTAGTGGTTTCTTGGACAGCAATGGAG GCGTCTGCTTTTTCAGGCTTGGCATTGCACGTTTTCAGCGCTTTCTTTCT CGCCTCTCGGTTGATCACAAGATAGACTAGGGAGCCGTCTTGTGCAATAG TTTTCCCCTTCGGTTTTCTTTCTGTTTTCTTCGTGTTGTCCACGATGTTG TCGACAGTAGACTAGAAGCCGATTCGTACTTCTTGTTGCATTTTCTTGCC GTCCACGATAAATTGTGGACAGGTCTGGGCCGACCATCTCCCGGCAGATC AAGATCTGGTCGACCGCAGAGAAGGAGGCGGAGAAGCTCCGTCGAAAGGA TCTCAAGAAGGCCGCCAAGCGCGGGGGTGGGGTCGCCGGCGGTCAGGGCC AGCAAGACGGCGGAGCAGGCGGGAGGGACGGTGGCGGCGGGTTGGACTGG CTGCAGTCTGTTGGGTTCGAGGAGGAGTACCTGAAGCAGGTCTGTCTTTG GATATGTAGCCCTGAGGAATGCATTCAGAGAGGAAGCGGGGCGGTTAAGT CGCGTTTCTTGTGTGCTCTAGCGTGGGTGATTCACGGTCCGTTGCACGTG CACGTGATTTCCTTACTTGCGCGAGAACGGTCAACACGAACAGCGTTGCT TTTGGAATGGGATGTAAAGAACCAATTACAATGGACCAACCTGACTGTTG CAGTTAGTGAAAAAATTATTTACGAAGTATTATTCATTGGTTTCCGAAAA AATGTGTGCTTTTTGTTTACCTTGTGTTTTCCTCGGTGGTTTTCCTCGGT TCTATTCTTTTCTATAGGAGCGTCTTCTCGGGCTGCAGGCAGGCGGTACC GGCGGCGGCGAGAGCGAAGAGGCGATGATGCTCGCGGGGTTGGCGCCCGA GGGGACAAGGGAGTGGCACGATCGCCGGTCCGGCATGCCAGCGGGGGCCA CGAAAACGGTAGTGGCCGGCCAGTACGAGCAGGTACAAGATGGCTGACCC CGGAAATTCGGTTTCTCACGCTTCGGGCGGTTCGTTTGCTGCAGGAGCAT CGAGCAATTGTCAAAGCAGGAATGATGGAGGGAAGTGAGAAGTGACTCGC GAGGGGACGCTTTTTTGGGGGGGGGGGTTCCTGCTACCTATGGTTGGTTT GTTCGTAAGTTCGCGCGGAGGGTCTGGGCGGAGGTCAAAGCGCCCTTCAG GGCGGGGATGGCGAAGGCATCGAAGATGGGTCTATTGGAATAGGCGTCAA ACGTGTAGCTTGCGGTGCAACGTTGCTGGTGGTGATGTTCGTGTTTCTGT TTCGTCCGGTGGCGTTGGCGTTGTTGCTGTTTCCGGTGCCGTTGCGGTTG CTGCCGCTACCGCTACCCACTGCTGCTGTCGCCCACTCTCTCAGCCAAGT GCCAAATTTTAGAGCATTTGGTTGTTACCTGCGACGCAAATAGCTCTCTC TCTTGGTCCAGATGTGCGATTCATTTGTAACAGCAAAAGTGTCGAGAAGT ACAACGGAAATAGCAACAACAACAACAACAGCAACAACAACGGACGGGGC GGCTAGTATAGTTTGGACTATTTCGATTGTTCCAGGTGAGCGTGCGTCCT GTTCTCTCTCATGCTTTGGGCCCGTTCATCCGATCGAAATGTTGTGGAAT GACGTCACCGCAGGTTCATATCCCGCCCCCGAAGCTAAACCGCAACAAGG ATGGGGAAGGTCTGGTGCCGATCACGGACCTCGAGCCGTGGGCCCAGATG GCTTTCAAGGGGACCAAGCGGCTCAACCCCATGCAGAGCAAGGCAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13346:3..3298+

>mRNA_Ecto-sp13_S_contig13346.2675.1 ID=mRNA_Ecto-sp13_S_contig13346.2675.1|Name=mRNA_Ecto-sp13_S_contig13346.2675.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1056bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13346:3..3298+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGCATCTTCATCCTCGCTGGGCGGCGAGGAGGAATCGAAGCACCCTGC
ACGGGACGTTGGTGGCGCTGCCGCTGGGGGAGGCGCTGTCCACGCACCTC
TTGCTTCGGGTACCGCCTCCTCGGGAAAATCGGGCGCGGCGGGAGCGGCT
GCGGCCGCAGAAACGTTTGACGCCGGGTGGCTCTATTCCAGGTGCATGCA
GTTTCACGCCCAGCAAGGGAGTCGGGGGCTACCTCCCGTGGATCTAGCTT
CTTCCGTCTTGGAAGTCCTCTCCCGAAGCACCGACCCCGGGGAGTTGCAG
GGATCCCTGTTCGACCTATTGGGGGAGGCGGGCCTGGAGCTGATGATGGA
ACTCATCGACAAGGCGCCTGCGCTAGGTCGGATCGACGCCAGAGACTTGT
TCGCGATCGCCGATGCCCACGGTGGTGGCGGCGGCGGGGGCGGCGGGGGC
GGGGGCTCCGCAGGTATCGGCGGCTTTGACGGGGGAGGGCTGGCCGCGGG
GATGGCGGAGATGGGTCTGGGCGGGGACGCCGCAACCGGCAGGTCTGGGC
CGACCATCTCCCGGCAGATCAAGATCTGGTCGACCGCAGAGAAGGAGGCG
GAGAAGCTCCGTCGAAAGGATCTCAAGAAGGCCGCCAAGCGCGGGGGTGG
GGTCGCCGGCGGTCAGGGCCAGCAAGACGGCGGAGCAGGCGGGAGGGACG
GTGGCGGCGGGTTGGACTGGCTGCAGTCTGTTGGGTTCGAGGAGGAGTAC
CTGAAGCAGGAGCGTCTTCTCGGGCTGCAGGCAGGCGGTACCGGCGGCGG
CGAGAGCGAAGAGGCGATGATGCTCGCGGGGTTGGCGCCCGAGGGGACAA
GGGAGTGGCACGATCGCCGGTCCGGCATGCCAGCGGGGGCCACGAAAACG
GTAGTGGCCGGCCAGTACGAGCAGGTTCATATCCCGCCCCCGAAGCTAAA
CCGCAACAAGGATGGGGAAGGTCTGGTGCCGATCACGGACCTCGAGCCGT
GGGCCCAGATGGCTTTCAAGGGGACCAAGCGGCTCAACCCCATGCAGAGC
AAGGCA
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