prot_Ecto-sp13_S_contig1331.2652.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1331.2652.1
Unique Nameprot_Ecto-sp13_S_contig1331.2652.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length303
Homology
BLAST of mRNA_Ecto-sp13_S_contig1331.2652.1 vs. uniprot
Match: D8LHU4_ECTSI (Rap2 interacting protein x isoform 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU4_ECTSI)

HSP 1 Score: 439 bits (1128), Expect = 5.540e-138
Identity = 231/246 (93.90%), Postives = 234/246 (95.12%), Query Frame = 0
Query:   39 MSWLSSIISGPQDSRESGKQVEARQRAATRARLVKNLRNAAQALAALQAKQQQEGVVPPQQAGGAMGMASETSGIPPRQHPPLIRGDTAEAVALCVAIEQCLFHRIRVKDFGVIPFWAFLERVERLPLTTGGGGAGRPGPHERRLASVRNTVGAVASLSNVSTPLGRARAWIRQCLVCKCLEPCVAALLEEDRLVKVFYEPTALARCREGSIILLRLCAALEAFDVVIDTDQSDLDTPPRWPILEE 284
            MSWLSSIISGPQDSR+SGKQVEARQRAATRARLVKNLRNAAQALAALQAKQQQEGV PPQQAGGAMGM SET GIP RQ PPLI GDTAEAVALCVAIEQCLFHRIRVKDFGVIPFWAFLERVERLPLT GGGGAGR GP ERRLASVRNTVGAVASLS+VSTPLGRARAWIRQCLVCKCLE CVAALLEEDRLVKVFYEPTALARCREGSIILLRLCAALEAFDV IDTDQS L+TPPRWPILEE
Sbjct:    1 MSWLSSIISGPQDSRDSGKQVEARQRAATRARLVKNLRNAAQALAALQAKQQQEGVAPPQQAGGAMGMVSETGGIPRRQQPPLIGGDTAEAVALCVAIEQCLFHRIRVKDFGVIPFWAFLERVERLPLTIGGGGAGRQGPRERRLASVRNTVGAVASLSHVSTPLGRARAWIRQCLVCKCLESCVAALLEEDRLVKVFYEPTALARCREGSIILLRLCAALEAFDVAIDTDQSALNTPPRWPILEE 246          
BLAST of mRNA_Ecto-sp13_S_contig1331.2652.1 vs. uniprot
Match: A0A6H5KE74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE74_9PHAE)

HSP 1 Score: 416 bits (1068), Expect = 1.140e-129
Identity = 217/230 (94.35%), Postives = 218/230 (94.78%), Query Frame = 0
Query:   63 QRAATRARLVKNLRNAAQALAALQAKQQQEGVVPPQQAGGAMGMASETSGIPPRQHPPLIRGDTAEAVALCVAIEQCLFHRIRVKDFGVIPFWAFLERVERLPLTTGGGGAGRPGPHERRLASVRNTVGAVASLSNVSTPLGRARAWIRQCLVCKCLEPCVAALLEEDRLVKVFYEPTALARCREGSIILLRLCAALEAFDVVIDTDQSDLDTPPRWPILEEEEEWDRRA 292
            QRAATRA+LVKNLRNAAQALAALQAKQQQEGV PPQQAGGAMGM SET GIPPRQ PPLI GDTAEAVALCVAIEQCLFHRIRVKDFGVIPFWAFLERVERLPLT G GGAGRPGP ERRLASVRNTVGAVASLSNVSTPLGRARAWIRQCLVCKCLE CVAALLEEDRLVKVFYEPTALARCREGSIILLRLCAALEAFDV IDTDQS LDTPPRWPILEEEEEWDR A
Sbjct:   53 QRAATRAKLVKNLRNAAQALAALQAKQQQEGVAPPQQAGGAMGMVSETGGIPPRQQPPLIGGDTAEAVALCVAIEQCLFHRIRVKDFGVIPFWAFLERVERLPLTMGEGGAGRPGPRERRLASVRNTVGAVASLSNVSTPLGRARAWIRQCLVCKCLESCVAALLEEDRLVKVFYEPTALARCREGSIILLRLCAALEAFDVAIDTDQSALDTPPRWPILEEEEEWDRLA 282          
BLAST of mRNA_Ecto-sp13_S_contig1331.2652.1 vs. uniprot
Match: A0A7S4M8N6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4M8N6_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 1.650e-7
Identity = 39/162 (24.07%), Postives = 70/162 (43.21%), Query Frame = 0
Query:  121 LIRGDTAEAVALCVAIEQCLFHRIRVKDFGVIPFWAFLERVERLPLTTGGGGAGRPGPHERRLASVRNTVGAVASLSNVSTPLGRARAWIRQCLVCKCLEPCVAALLEEDRLVKVFYEPTALARCREGSIILLRLCAALEAFDVVIDTDQSDLDTPPRWPIL 282
            ++  D      LC AIE  L H ++   FG   +W +LE + +                   +   ++ +  +     +S+ LGR RAW+R  L  + L P + +LL E+ L   +Y P AL R  +   ++L L  +L      +  +   L++P  + +L
Sbjct:   35 VLYADNTHVTDLCYAIESLLKHGLQQGFFGTTTYWNYLENIAKC------------------MPDGQSVLQRIRQTPEISSDLGRGRAWVRVALNDQSLGPYLKSLLWEEELTNKYYHPKALMREEDDIALVLMLLESLSHLKFSLTLNDERLNSPDCFELL 178          
BLAST of mRNA_Ecto-sp13_S_contig1331.2652.1 vs. uniprot
Match: A0A0L0DDL3_THETB (TBC1D2 protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DDL3_THETB)

HSP 1 Score: 57.4 bits (137), Expect = 1.720e-5
Identity = 43/148 (29.05%), Postives = 66/148 (44.59%), Query Frame = 0
Query:  133 CVAIEQCLFHRIRVKDFGVIP-----FWAFLERVERLPLTTGGGGAGRPGPHERRLASVRNTVGAVASLSNVSTPLGRARAWIRQCLVCKCLEPCVAALLEEDRLVKVFYEPTALARCREGSIILLRLCAALEAFDVVIDTDQSDLDT 275
            C A E  + H  + +  G+       FW ++E+V +              PH         T+ ++A++S + +PLGRARAWIR  LV   LE  + ALL    L K +Y   A+ R     + LL   A L + +  +     DLD+
Sbjct:  480 CQAFEAVMRHGFKDRSGGLFSRTPREFWEYVEKVRKYH------------PH------AAPTIKSIAAMSELRSPLGRARAWIRAALVEARLEEYLVALLNHTNLTKEWYADHAVLRSHVDVLALLAQLARLSSINFALCARDVDLDS 609          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1331.2652.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LHU4_ECTSI5.540e-13893.90Rap2 interacting protein x isoform 3 n=1 Tax=Ectoc... [more]
A0A6H5KE74_9PHAE1.140e-12994.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4M8N6_9EUKA1.650e-724.07Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A0L0DDL3_THETB1.720e-529.05TBC1D2 protein n=1 Tax=Thecamonas trahens ATCC 500... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 68..92
NoneNo IPR availableGENE3D1.20.58.900coord: 58..275
e-value: 3.7E-30
score: 106.9
NoneNo IPR availablePANTHERPTHR45956FAMILY NOT NAMEDcoord: 131..275
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..30
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 31..303
NoneNo IPR availableTMHMMTMhelixcoord: 12..31
IPR004012RUN domainSMARTSM00593893paper3coord: 206..269
e-value: 6.1E-6
score: 35.7
IPR004012RUN domainPFAMPF02759RUNcoord: 132..266
e-value: 1.1E-13
score: 51.3
IPR004012RUN domainPROSITEPS50826RUNcoord: 123..271
score: 23.651
IPR037213RUN domain superfamilySUPERFAMILY140741RUN domain-likecoord: 120..275

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1331contigEcto-sp13_S_contig1331:12603..15642 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1331.2652.1mRNA_Ecto-sp13_S_contig1331.2652.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1331 12603..15642 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1331.2652.1 ID=prot_Ecto-sp13_S_contig1331.2652.1|Name=mRNA_Ecto-sp13_S_contig1331.2652.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=303bp
ACTTRQLVRCPLHSVLCTLYPVFCTLWLVVVEPPAVQTMSWLSSIISGPQ
DSRESGKQVEARQRAATRARLVKNLRNAAQALAALQAKQQQEGVVPPQQA
GGAMGMASETSGIPPRQHPPLIRGDTAEAVALCVAIEQCLFHRIRVKDFG
VIPFWAFLERVERLPLTTGGGGAGRPGPHERRLASVRNTVGAVASLSNVS
TPLGRARAWIRQCLVCKCLEPCVAALLEEDRLVKVFYEPTALARCREGSI
ILLRLCAALEAFDVVIDTDQSDLDTPPRWPILEEEEEWDRRAEATYSAAA
AAD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004012Run_dom
IPR037213Run_dom_sf