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Homology
BLAST of mRNA_Ecto-sp13_S_contig1331.2652.1 vs. uniprot
Match: D8LHU4_ECTSI (Rap2 interacting protein x isoform 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU4_ECTSI) HSP 1 Score: 439 bits (1128), Expect = 5.540e-138 Identity = 231/246 (93.90%), Postives = 234/246 (95.12%), Query Frame = 1
Query: 115 MSWLSSIISGPQDSRESGKQVEARQRAATRARLVKNLRNAAQALAALQAKQQQEGVVPPQQAGGAMGMASETSGIPPRQHPPLIRGDTAEAVALCVAIEQCLFHRIRVKDFGVIPFWAFLERVERLPLTTGGGGAGRPGPHERRLASVRNTVGAVASLSNVSTPLGRARAWIRQCLVCKCLEPCVAALLEEDRLVKVFYEPTALARCREGSIILLRLCAALEAFDVVIDTDQSDLDTPPRWPILEE 852
MSWLSSIISGPQDSR+SGKQVEARQRAATRARLVKNLRNAAQALAALQAKQQQEGV PPQQAGGAMGM SET GIP RQ PPLI GDTAEAVALCVAIEQCLFHRIRVKDFGVIPFWAFLERVERLPLT GGGGAGR GP ERRLASVRNTVGAVASLS+VSTPLGRARAWIRQCLVCKCLE CVAALLEEDRLVKVFYEPTALARCREGSIILLRLCAALEAFDV IDTDQS L+TPPRWPILEE
Sbjct: 1 MSWLSSIISGPQDSRDSGKQVEARQRAATRARLVKNLRNAAQALAALQAKQQQEGVAPPQQAGGAMGMVSETGGIPRRQQPPLIGGDTAEAVALCVAIEQCLFHRIRVKDFGVIPFWAFLERVERLPLTIGGGGAGRQGPRERRLASVRNTVGAVASLSHVSTPLGRARAWIRQCLVCKCLESCVAALLEEDRLVKVFYEPTALARCREGSIILLRLCAALEAFDVAIDTDQSALNTPPRWPILEE 246
BLAST of mRNA_Ecto-sp13_S_contig1331.2652.1 vs. uniprot
Match: A0A6H5KE74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE74_9PHAE) HSP 1 Score: 416 bits (1068), Expect = 1.140e-129 Identity = 217/230 (94.35%), Postives = 218/230 (94.78%), Query Frame = 1
Query: 187 QRAATRARLVKNLRNAAQALAALQAKQQQEGVVPPQQAGGAMGMASETSGIPPRQHPPLIRGDTAEAVALCVAIEQCLFHRIRVKDFGVIPFWAFLERVERLPLTTGGGGAGRPGPHERRLASVRNTVGAVASLSNVSTPLGRARAWIRQCLVCKCLEPCVAALLEEDRLVKVFYEPTALARCREGSIILLRLCAALEAFDVVIDTDQSDLDTPPRWPILEEEEEWDRRA 876
QRAATRA+LVKNLRNAAQALAALQAKQQQEGV PPQQAGGAMGM SET GIPPRQ PPLI GDTAEAVALCVAIEQCLFHRIRVKDFGVIPFWAFLERVERLPLT G GGAGRPGP ERRLASVRNTVGAVASLSNVSTPLGRARAWIRQCLVCKCLE CVAALLEEDRLVKVFYEPTALARCREGSIILLRLCAALEAFDV IDTDQS LDTPPRWPILEEEEEWDR A
Sbjct: 53 QRAATRAKLVKNLRNAAQALAALQAKQQQEGVAPPQQAGGAMGMVSETGGIPPRQQPPLIGGDTAEAVALCVAIEQCLFHRIRVKDFGVIPFWAFLERVERLPLTMGEGGAGRPGPRERRLASVRNTVGAVASLSNVSTPLGRARAWIRQCLVCKCLESCVAALLEEDRLVKVFYEPTALARCREGSIILLRLCAALEAFDVAIDTDQSALDTPPRWPILEEEEEWDRLA 282
BLAST of mRNA_Ecto-sp13_S_contig1331.2652.1 vs. uniprot
Match: A0A7S4M8N6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4M8N6_9EUKA) HSP 1 Score: 60.8 bits (146), Expect = 1.650e-7 Identity = 39/162 (24.07%), Postives = 70/162 (43.21%), Query Frame = 1
Query: 361 LIRGDTAEAVALCVAIEQCLFHRIRVKDFGVIPFWAFLERVERLPLTTGGGGAGRPGPHERRLASVRNTVGAVASLSNVSTPLGRARAWIRQCLVCKCLEPCVAALLEEDRLVKVFYEPTALARCREGSIILLRLCAALEAFDVVIDTDQSDLDTPPRWPIL 846
++ D LC AIE L H ++ FG +W +LE + + + ++ + + +S+ LGR RAW+R L + L P + +LL E+ L +Y P AL R + ++L L +L + + L++P + +L
Sbjct: 35 VLYADNTHVTDLCYAIESLLKHGLQQGFFGTTTYWNYLENIAKC------------------MPDGQSVLQRIRQTPEISSDLGRGRAWVRVALNDQSLGPYLKSLLWEEELTNKYYHPKALMREEDDIALVLMLLESLSHLKFSLTLNDERLNSPDCFELL 178
BLAST of mRNA_Ecto-sp13_S_contig1331.2652.1 vs. uniprot
Match: A0A0L0DDL3_THETB (TBC1D2 protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DDL3_THETB) HSP 1 Score: 57.4 bits (137), Expect = 1.720e-5 Identity = 43/148 (29.05%), Postives = 66/148 (44.59%), Query Frame = 1
Query: 397 CVAIEQCLFHRIRVKDFGVIP-----FWAFLERVERLPLTTGGGGAGRPGPHERRLASVRNTVGAVASLSNVSTPLGRARAWIRQCLVCKCLEPCVAALLEEDRLVKVFYEPTALARCREGSIILLRLCAALEAFDVVIDTDQSDLDT 825
C A E + H + + G+ FW ++E+V + PH T+ ++A++S + +PLGRARAWIR LV LE + ALL L K +Y A+ R + LL A L + + + DLD+
Sbjct: 480 CQAFEAVMRHGFKDRSGGLFSRTPREFWEYVEKVRKYH------------PH------AAPTIKSIAAMSELRSPLGRARAWIRAALVEARLEEYLVALLNHTNLTKEWYADHAVLRSHVDVLALLAQLARLSSINFALCARDVDLDS 609
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Mammalia |
| Stop | 0 |
| Start | 0 |
| Seed ortholog score | 62.0 |
| Seed ortholog evalue | 5.5e-07 |
| Seed eggNOG ortholog | 10160.XP_004646598.1 |
| Preferred name | RUFY3 |
| Model size | 910 |
| Hectar predicted targeting category | signal anchor |
| GOs | GO:0001558,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006996,GO:0007010,GO:0007015,GO:0007275,GO:0007399,GO:0008150,GO:0008361,GO:0009987,GO:0010720,GO:0010721,GO:0010769,GO:0010770,GO:0010771,GO:0010975,GO:0010976,GO:0010977,GO:0016043,GO:0022008,GO:0022603,GO:0022604,GO:0030027,GO:0030029,GO:0030036,GO:0030154,GO:0030175,GO:0030307,GO:0030334,GO:0030335,GO:0030424,GO:0030425,GO:0030426,GO:0030427,GO:0030516,GO:0031252,GO:0031344,GO:0031345,GO:0031346,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032535,GO:0032878,GO:0032879,GO:0032880,GO:0033157,GO:0033267,GO:0036477,GO:0040008,GO:0040012,GO:0040017,GO:0042995,GO:0043005,GO:0043025,GO:0043204,GO:0044297,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045665,GO:0045666,GO:0045773,GO:0045927,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048638,GO:0048639,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050769,GO:0050770,GO:0050771,GO:0050772,GO:0050789,GO:0050793,GO:0050794,GO:0051049,GO:0051050,GO:0051093,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051222,GO:0051223,GO:0051239,GO:0051240,GO:0051241,GO:0051270,GO:0051272,GO:0051960,GO:0051961,GO:0051962,GO:0060284,GO:0060341,GO:0061387,GO:0065007,GO:0065008,GO:0070201,GO:0071437,GO:0071840,GO:0090066,GO:0090087,GO:0090316,GO:0097435,GO:0097447,GO:0097458,GO:0098858,GO:0120025,GO:0120035,GO:0120038,GO:0150034,GO:1903827,GO:1903829,GO:1904951,GO:2000026,GO:2000114,GO:2000145,GO:2000147 |
| Exons | 4 |
| EggNOG free text desc. | RUN |
| EggNOG OGs | 35M3G@314146,38BTR@33154,3B966@33208,3CRQ7@33213,3J8UH@40674,4821C@7711,48Z0T@7742,4Q7XZ@9989,KOG4381@1,KOG4381@2759 |
| Cds size | 909 |
| COG Functional cat. | Z |
| Best tax level | Rodentia |
| Best eggNOG OG | NA|NA|NA |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462711.395724-CDS-Ecto-sp13_S_contig1331:12602..12791 | 1681462711.395724-CDS-Ecto-sp13_S_contig1331:12602..12791 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1331 12603..12791 + |
| 1681462711.4056191-CDS-Ecto-sp13_S_contig1331:13655..13914 | 1681462711.4056191-CDS-Ecto-sp13_S_contig1331:13655..13914 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1331 13656..13914 + |
| 1681462711.4157524-CDS-Ecto-sp13_S_contig1331:14660..14914 | 1681462711.4157524-CDS-Ecto-sp13_S_contig1331:14660..14914 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1331 14661..14914 + |
| 1681462711.4262369-CDS-Ecto-sp13_S_contig1331:15435..15642 | 1681462711.4262369-CDS-Ecto-sp13_S_contig1331:15435..15642 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1331 15436..15642 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1331.2652.1 >prot_Ecto-sp13_S_contig1331.2652.1 ID=prot_Ecto-sp13_S_contig1331.2652.1|Name=mRNA_Ecto-sp13_S_contig1331.2652.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=303bp
ACTTRQLVRCPLHSVLCTLYPVFCTLWLVVVEPPAVQTMSWLSSIISGPQ DSRESGKQVEARQRAATRARLVKNLRNAAQALAALQAKQQQEGVVPPQQA GGAMGMASETSGIPPRQHPPLIRGDTAEAVALCVAIEQCLFHRIRVKDFG VIPFWAFLERVERLPLTTGGGGAGRPGPHERRLASVRNTVGAVASLSNVS TPLGRARAWIRQCLVCKCLEPCVAALLEEDRLVKVFYEPTALARCREGSI ILLRLCAALEAFDVVIDTDQSDLDTPPRWPILEEEEEWDRRAEATYSAAA AAD back to topmRNA from alignment at Ecto-sp13_S_contig1331:12603..15642+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig1331.2652.1 ID=mRNA_Ecto-sp13_S_contig1331.2652.1|Name=mRNA_Ecto-sp13_S_contig1331.2652.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3040bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1331:12603..15642+ (Ectocarpus species13 EcNAP12_S_4_19m) GCTTGCACCACGAGACAGTTGGTCCGCTGCCCTCTGCACTCTGTGCTCTG
TACTCTGTACCCTGTATTCTGTACTCTGTGGCTGGTCGTGGTGGAGCCGC
CAGCGGTGCAAACGATGAGCTGGCTGTCTTCCATCATCTCTGGTCCTCAG
GACAGCCGCGAAAGCGGCAAGCAGGTGGAAGCTAGACAGGTAAGGACACG
ATTGCTGCTGTTGTTGTGCCTGGGCTCTCTTGCTTCGTCTCACGGCCTTC
TTTGACTACCGAGCCGCTGCGGTGCGCTGCGAAGTCTGCTGGCTTGCCGC
TTTTCACATCCGCACTGGCAACAATGGAAAGCGTTGGCACCAAGTTGTCT
CAGTTGGAGTACTTACGCATTTTCTGGCACGTTTCTTTCATGGACAATGA
TGCGATAGTCATTACTGTAAGGCCGGGACATCACCGCTGTAGTTAAAGAT
TTTAATATCTCCAACTGCCGTCTATCCTGTGCACTGTATTGTCGTATGCA
TACCAACCAACACGTCACGGGTTCTGCGATACCTAAGCCGACCACATGCA
GTCTCTCCGCCGGCTACTTGGGCAATACGCTTTCGCATGACAGAGTAAAC
CTTTTTGCTGAAAGGTACTACGCACATAAACCTACGACCTAAAGAGGCGC
CCTGACACAATCCCACCGCATTTGCACACTGCACCCACAACCCACAACAC
CTTCGAGACACTCTGCCCACAGCAGTCTGCATTTATGCACACCTGTACTT
GAATTGTTTCAAAACTCGCATCTTTGCAAATACTTTCGTCGGCACCAATG
GATTGTGTCGGTCGTAGCGTCTCTCGACGACTGTACATAGGTGCAAACAC
TCTATTGGACGGCATGCACAAATCAATGTCTTCCTTGTTCCTTGAATACT
GGAGAATGTAACCAACTTCAACCCCGCCGACACAACTCAACGCAAACTAT
ACCAACACGACACGCTCGACGCCCCGCTTCCCACCATACTCCCACCAAAC
TGAGTTTTCTAAAATATCGTCTCCCCCGGCACCACCGAACATTCCTTCTT
CAGCGAGCTGCCACTAGAGCGAGGCTTGTGAAGAACCTTAGAAATGCCGC
ACAAGCCTTGGCGGCGCTGCAAGCCAAGCAGCAGCAGGAAGGGGTTGTGC
CGCCGCAGCAGGCCGGCGGCGCCATGGGCATGGCCTCCGAAACGAGCGGG
ATTCCGCCGCGTCAACATCCGCCGTTGATTAGAGGAGACACTGCCGAGGC
TGTCGCGTTGTGCGTCGCCATCGAGCAGTGCCTGTTCCATCGCATCCGGG
TTAAGGACTTCGGTGAGAGAGGCACTACCACCACAGTAGAGGAAGAAGAG
GCCACCCCTAGTCTTTTGGTCGCGAGATGTTTGGCGTTACTGAAGTATGT
ACGAGAGTTTGGTTGGATCGATGGTTAATGTTGGTGTGCGGGTCTCGGTT
TTGTCGGGATCTCCCACACCTGCGACATGGAGACAAAGCCTCCGAGTGTA
GCCTTTGCACGTAAGCTACTACATTGACACTGCTTGTTTTTGTGCTAGGC
TGGCGGTCTTTTCGTGTTGATCTGTTTGTTGAATGGTATTCACTTCGTGG
CAAGGGAGATGGGGTGGGGGGAGTAGAGGATATCTCAGGGTGGTTGATCA
TCTGGCTCCCCGGAGTTGCCCCCTCGTGTCCTGCCGTTACAACACAGCGT
AGCCTATCAGGTATCTTGAAACCCCCCGCTTGTTTCACTTTCATGATTCG
ATGCCAGGTCGAGCTTCGGCGCGCCCCTCTCGTCTCTTACGTGATTTTTC
ACGTGCGTGGTGAATTTGCGTCCACCGGGTCTCACCGCGCTCGCTACATG
CTACCTCATCGCTTCCCGGGCATCGTGGGCATCGTCAACACGTTGAAAGA
GAGATACCCGTTGTAGCCTCTGCCAACGTGGCTCTCTTGCCGGCAATCCC
CCCACCCCCACGCACGAACCAATATCTAGATACCAGTGCCCCACCCACCC
CTGTACCTTGCCCCTTTTTCCAAACCGCCGTGCCCCCCACTACCTATTCC
GGTCCCAGGCGTGATACCCTTTTGGGCCTTCCTTGAGCGGGTGGAGCGGC
TCCCCCTTACGACGGGGGGGGGTGGGGCCGGCCGTCCGGGTCCGCACGAG
CGCCGTCTTGCGAGCGTCCGGAACACGGTCGGGGCCGTGGCCTCCCTGTC
GAACGTTTCGACGCCGCTGGGGAGGGCGAGGGCGTGGATCCGCCAGTGCC
TGGTGTGCAAGTGCCTGGAGCCTTGCGTGGCGGCGTTGCTGGAGGAAGAC
CGGCTCGTGAAGGTGTGTAGGTCGGTTGTCGTTGGGGAGCGTTTCTTTTT
CGGCTTGCCCTGCCCCGTAGAGCTACATTGCCTGCCCGATGCTTGGGGCT
GCGGTGTTTATGCCGGTTTGGGAAGCAGGCTTCATTGCCGACGACACAAA
GCATGCGCGTGATTGGGATCCGACTTGAACCTCTCGAAACTGCTTGCGTC
CTCCAAGAAATGCCGAACCCGGGGCAATCCCCAAGCGAATTGTTTTGCTG
GCACGCCTGCTGTGCGAGATAGACGGCTGTCCGTACGGTGTCCTCAACGC
CCCCTCCGTCCCCCCCTCTGCAGTAGCCTTCACAAGGATGATTATGTTGG
TTAAAGTAGGGGGTACGGGATTGGGTTAAGGCTGCGAACCCCCCTCTCTA
AATCATTGACTAAAAATATTACCGTTGCGAGGGCGGTCCCCCCCCCGGCT
AACCCCGGTCCAGCCGTGAGTTGTGAGTTTCTCTTCTCCCTGCACCCTCT
TCCGTCCGCGCACCCGTTCCCTGTCAAAATAAGGTGTTCTACGAGCCGAC
AGCCCTGGCACGATGCCGAGAAGGATCGATCATCCTCCTGCGCCTGTGCG
CGGCCCTCGAAGCATTCGACGTCGTAATCGACACCGACCAATCGGATCTC
GACACCCCGCCGCGCTGGCCAATCCTCGAAGAGGAAGAAGAGTGGGACCG
ACGCGCGGAAGCAACGTATTCAGCGGCAGCCGCCGCCGAC back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig1331:12603..15642+ >mRNA_Ecto-sp13_S_contig1331.2652.1 ID=mRNA_Ecto-sp13_S_contig1331.2652.1|Name=mRNA_Ecto-sp13_S_contig1331.2652.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=909bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1331:12603..15642+ (Ectocarpus species13 EcNAP12_S_4_19m) GCTTGCACCACGAGACAGTTGGTCCGCTGCCCTCTGCACTCTGTGCTCTG TACTCTGTACCCTGTATTCTGTACTCTGTGGCTGGTCGTGGTGGAGCCGC CAGCGGTGCAAACGATGAGCTGGCTGTCTTCCATCATCTCTGGTCCTCAG GACAGCCGCGAAAGCGGCAAGCAGGTGGAAGCTAGACAGCGAGCTGCCAC TAGAGCGAGGCTTGTGAAGAACCTTAGAAATGCCGCACAAGCCTTGGCGG CGCTGCAAGCCAAGCAGCAGCAGGAAGGGGTTGTGCCGCCGCAGCAGGCC GGCGGCGCCATGGGCATGGCCTCCGAAACGAGCGGGATTCCGCCGCGTCA ACATCCGCCGTTGATTAGAGGAGACACTGCCGAGGCTGTCGCGTTGTGCG TCGCCATCGAGCAGTGCCTGTTCCATCGCATCCGGGTTAAGGACTTCGGC GTGATACCCTTTTGGGCCTTCCTTGAGCGGGTGGAGCGGCTCCCCCTTAC GACGGGGGGGGGTGGGGCCGGCCGTCCGGGTCCGCACGAGCGCCGTCTTG CGAGCGTCCGGAACACGGTCGGGGCCGTGGCCTCCCTGTCGAACGTTTCG ACGCCGCTGGGGAGGGCGAGGGCGTGGATCCGCCAGTGCCTGGTGTGCAA GTGCCTGGAGCCTTGCGTGGCGGCGTTGCTGGAGGAAGACCGGCTCGTGA AGGTGTTCTACGAGCCGACAGCCCTGGCACGATGCCGAGAAGGATCGATC ATCCTCCTGCGCCTGTGCGCGGCCCTCGAAGCATTCGACGTCGTAATCGA CACCGACCAATCGGATCTCGACACCCCGCCGCGCTGGCCAATCCTCGAAG AGGAAGAAGAGTGGGACCGACGCGCGGAAGCAACGTATTCAGCGGCAGCC GCCGCCGAC back to top
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